Wall clock time and date at job start Tue Mar 31 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47180 * 19.92974 * 3 2 1 5 5 C 1.37095 * 119.99802 * 269.99607 * 4 3 2 6 6 H 1.08009 * 120.00062 * 201.80019 * 5 4 3 7 7 C 1.38946 * 120.00270 * 21.80029 * 5 4 3 8 8 N 1.31416 * 119.99728 * 352.27263 * 7 5 4 9 9 Si 1.86798 * 120.00352 * 172.27069 * 7 5 4 10 10 H 1.48498 * 109.47162 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47232 * 120.00113 * 9 7 5 12 12 H 1.48497 * 109.47343 * 239.99905 * 9 7 5 13 13 C 1.34777 * 120.00302 * 90.00173 * 4 3 2 14 14 O 1.21294 * 119.99867 * 5.02882 * 13 4 3 15 15 C 1.50698 * 120.00107 * 185.03254 * 13 4 3 16 16 C 1.53001 * 109.47015 * 180.71979 * 15 13 4 17 17 H 1.08999 * 109.47122 * 305.00097 * 16 15 13 18 18 C 1.52996 * 109.46950 * 65.00084 * 16 15 13 19 19 C 1.50701 * 109.46883 * 184.99870 * 16 15 13 20 20 C 1.38245 * 119.97173 * 120.00168 * 19 16 15 21 21 C 1.38200 * 120.02250 * 179.97438 * 20 19 16 22 22 C 1.38460 * 119.97792 * 0.02562 * 21 20 19 23 23 F 1.35095 * 120.02839 * 179.97438 * 22 21 20 24 24 C 1.38460 * 119.94533 * 0.25185 * 22 21 20 25 25 C 1.38200 * 119.97528 * 359.46722 * 24 22 21 26 26 H 4.40636 * 5.51427 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47349 * 259.92666 * 3 2 1 28 28 H 1.09002 * 109.46868 * 139.92567 * 3 2 1 29 29 H 0.97004 * 119.99685 * 185.01665 * 8 7 5 30 30 H 1.09000 * 109.47053 * 60.72240 * 15 13 4 31 31 H 1.08996 * 109.46747 * 300.72091 * 15 13 4 32 32 H 1.09006 * 109.47453 * 179.97438 * 18 16 15 33 33 H 1.09000 * 109.47142 * 299.99491 * 18 16 15 34 34 H 1.08997 * 109.47517 * 59.99627 * 18 16 15 35 35 H 1.08000 * 119.98670 * 0.02562 * 20 19 16 36 36 H 1.07998 * 120.01106 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.01447 * 179.74499 * 24 22 21 38 38 H 1.08000 * 119.99167 * 180.29860 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2976 -0.4708 5 6 3.3639 -2.3097 0.4251 6 1 4.0325 -3.1180 0.1676 7 6 2.7359 -2.2958 1.6645 8 7 2.0446 -1.2428 2.0390 9 14 2.8742 -3.7739 2.7983 10 1 3.7019 -4.8212 2.1477 11 1 3.5122 -3.3611 4.0741 12 1 1.5189 -4.3142 3.0748 13 6 3.3597 -1.4970 -1.7847 14 8 3.2451 -0.5764 -2.5661 15 6 3.7532 -2.8637 -2.2829 16 6 3.9642 -2.8132 -3.7974 17 1 3.0684 -2.4174 -4.2760 18 6 5.1553 -1.9075 -4.1165 19 6 4.2372 -4.2026 -4.3132 20 6 3.3951 -4.7686 -5.2522 21 6 3.6448 -6.0425 -5.7263 22 6 4.7385 -6.7522 -5.2601 23 9 4.9832 -7.9977 -5.7224 24 6 5.5778 -6.1865 -4.3153 25 6 5.3295 -4.9102 -3.8470 26 1 -1.0498 -0.0004 0.0000 27 1 3.0092 0.1806 1.0118 28 1 3.0089 0.7872 -0.6616 29 1 1.6673 -1.2028 2.9318 30 1 2.9626 -3.5770 -2.0498 31 1 4.6781 -3.1749 -1.7974 32 1 5.3060 -1.8718 -5.1955 33 1 4.9578 -0.9026 -3.7434 34 1 6.0511 -2.3032 -3.6378 35 1 2.5424 -4.2146 -5.6161 36 1 2.9871 -6.4843 -6.4602 37 1 6.4288 -6.7406 -3.9478 38 1 5.9868 -4.4668 -3.1136 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281018742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:50 Heat of formation + Delta-G solvation = 1.972462 kcal Electronic energy + Delta-G solvation = -22297.358545 eV Core-core repulsion = 18828.139291 eV Total energy + Delta-G solvation = -3469.219255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.87855 -39.57820 -38.52126 -35.53130 -34.19924 -31.84103 -31.42661 -31.12313 -29.24770 -27.71391 -26.03847 -24.42816 -23.32832 -22.76677 -20.26794 -19.10041 -17.68351 -17.65002 -16.72706 -16.30632 -16.09749 -15.57520 -15.19245 -14.64572 -14.42121 -14.28979 -13.96454 -13.62131 -13.43038 -13.02087 -12.98942 -12.81916 -12.38814 -11.99389 -11.86568 -11.58882 -11.24294 -11.22794 -11.10695 -10.80387 -10.67833 -10.54021 -10.45158 -10.21702 -9.54829 -9.23772 -9.08484 -8.64679 -8.50168 -8.33629 -7.92877 -6.35266 -4.04926 1.18904 1.25781 3.05419 3.16442 3.19013 3.61174 3.72850 3.91682 4.10826 4.27940 4.30760 4.69973 4.79094 4.88068 4.99236 5.14249 5.30701 5.33729 5.51400 5.62290 5.72682 5.78753 5.93100 6.11560 6.16085 6.18180 6.20034 6.21037 6.32602 6.49962 6.53079 6.74444 6.80392 6.86317 6.95523 7.10875 7.24396 7.32840 7.68588 8.30312 8.97171 9.00928 9.41267 9.81068 10.57923 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.004489 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.871825 B = 6235.305810 C = 7223.423391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.086 4.086 3 C 0.234 3.766 4 N -0.443 5.443 5 C -0.337 4.337 6 H 0.100 0.900 7 C 0.039 3.961 8 N -0.863 5.863 9 Si 0.923 3.077 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.463 3.537 14 O -0.602 6.602 15 C -0.110 4.110 16 C -0.037 4.037 17 H 0.084 0.916 18 C -0.144 4.144 19 C -0.073 4.073 20 C -0.090 4.090 21 C -0.153 4.153 22 C 0.082 3.918 23 F -0.146 7.146 24 C -0.152 4.152 25 C -0.085 4.085 26 H 0.196 0.804 27 H 0.123 0.877 28 H 0.062 0.938 29 H 0.269 0.731 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 -6.523 -8.498 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.088 4.088 3 C 0.112 3.888 4 N -0.161 5.161 5 C -0.464 4.464 6 H 0.118 0.882 7 C -0.166 4.166 8 N -0.501 5.501 9 Si 0.750 3.250 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.206 1.206 13 C 0.252 3.748 14 O -0.489 6.489 15 C -0.150 4.150 16 C -0.056 4.056 17 H 0.102 0.898 18 C -0.201 4.201 19 C -0.073 4.073 20 C -0.108 4.108 21 C -0.172 4.172 22 C 0.063 3.937 23 F -0.125 7.125 24 C -0.171 4.171 25 C -0.103 4.103 26 H 0.213 0.787 27 H 0.141 0.859 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.289 -6.088 -8.701 11.452 hybrid contribution -0.313 -1.230 0.846 1.525 sum 3.976 -7.317 -7.855 11.447 Atomic orbital electron populations 1.24181 0.95354 1.03872 1.07706 1.23279 0.94427 0.96803 0.94253 1.18341 0.83907 0.85345 1.01256 1.43692 1.56412 1.11259 1.04721 1.19682 1.26491 1.03376 0.96855 0.88224 1.25370 0.94700 0.97917 0.98638 1.69966 1.33494 1.27285 1.19387 0.85920 0.78189 0.81192 0.79723 1.19276 1.20651 1.20614 1.20174 0.82437 0.90001 0.82152 1.90501 1.58697 1.44560 1.55111 1.21444 1.02847 0.96960 0.93752 1.19938 1.00343 0.89819 0.95462 0.89761 1.21925 0.96119 1.01746 1.00346 1.20194 0.94436 0.96832 0.95860 1.20999 0.99262 0.94132 0.96386 1.21095 0.97635 0.95844 1.02594 1.17702 0.97351 0.80744 0.97926 1.91468 1.94199 1.39121 1.87725 1.21120 1.00633 0.96863 0.98437 1.20953 0.97199 0.93094 0.99047 0.78717 0.85935 0.92013 0.91928 0.89786 0.90159 0.93622 0.89624 0.93527 0.85012 0.85093 0.85024 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.64 19.25 29.55 0.57 -6.07 16 2 C -0.09 -2.11 11.44 -37.12 -0.42 -2.54 16 3 C 0.23 5.64 5.21 -6.83 -0.04 5.61 16 4 N -0.44 -10.72 2.58 -117.93 -0.30 -11.02 16 5 C -0.34 -8.09 9.11 -14.94 -0.14 -8.23 16 6 H 0.10 2.24 6.53 -52.48 -0.34 1.90 16 7 C 0.04 0.93 5.40 -17.47 -0.09 0.84 16 8 N -0.86 -21.72 8.36 55.50 0.46 -21.25 16 9 Si 0.92 19.01 29.56 -169.99 -5.03 13.98 16 10 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 13 C 0.46 10.47 7.33 -10.99 -0.08 10.39 16 14 O -0.60 -14.60 13.55 5.55 0.08 -14.53 16 15 C -0.11 -2.01 3.55 -27.88 -0.10 -2.11 16 16 C -0.04 -0.58 2.21 -91.77 -0.20 -0.78 16 17 H 0.08 1.41 7.68 -51.93 -0.40 1.01 16 18 C -0.14 -2.19 8.75 37.16 0.32 -1.87 16 19 C -0.07 -1.00 4.78 -104.62 -0.50 -1.50 16 20 C -0.09 -1.12 9.67 -39.59 -0.38 -1.50 16 21 C -0.15 -1.82 10.03 -39.51 -0.40 -2.21 16 22 C 0.08 1.04 7.30 -39.42 -0.29 0.75 16 23 F -0.15 -1.90 17.27 2.25 0.04 -1.86 16 24 C -0.15 -1.83 10.03 -39.51 -0.40 -2.23 16 25 C -0.08 -1.08 8.76 -39.59 -0.35 -1.42 16 26 H 0.20 3.64 7.80 -54.10 -0.42 3.22 16 27 H 0.12 3.03 6.22 -51.93 -0.32 2.71 16 28 H 0.06 1.45 7.36 -51.93 -0.38 1.06 16 29 H 0.27 6.53 8.32 -40.82 -0.34 6.19 16 30 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.08 1.37 6.88 -51.93 -0.36 1.01 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.54 5.98 -51.93 -0.31 1.23 16 34 H 0.05 0.64 7.39 -51.93 -0.38 0.26 16 35 H 0.13 1.45 7.94 -52.49 -0.42 1.03 16 36 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.13 1.55 7.16 -52.49 -0.38 1.17 16 LS Contribution 327.09 15.07 4.93 4.93 Total: -1.00 -27.74 327.09 -6.85 -34.59 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.54 Total: 8.04 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -2.49 Total: -12.88 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.16 Total: -32.27 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.08 Total: -14.53 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.74 -6.85 -34.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281018742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.564 kcal (2) G-P(sol) polarization free energy of solvation -27.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds