Wall clock time and date at job start Tue Mar 31 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47180 * 19.92974 * 3 2 1 5 5 C 1.37095 * 119.99802 * 269.99607 * 4 3 2 6 6 H 1.08009 * 120.00062 * 201.80019 * 5 4 3 7 7 C 1.38946 * 120.00270 * 21.80029 * 5 4 3 8 8 N 1.31416 * 119.99728 * 352.27263 * 7 5 4 9 9 Si 1.86798 * 120.00352 * 172.27069 * 7 5 4 10 10 H 1.48498 * 109.47162 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47232 * 120.00113 * 9 7 5 12 12 H 1.48497 * 109.47343 * 239.99905 * 9 7 5 13 13 C 1.34777 * 120.00302 * 90.00173 * 4 3 2 14 14 O 1.21294 * 119.99867 * 5.02882 * 13 4 3 15 15 C 1.50698 * 120.00107 * 185.03254 * 13 4 3 16 16 C 1.53001 * 109.47015 * 180.71979 * 15 13 4 17 17 H 1.08999 * 109.47122 * 305.00097 * 16 15 13 18 18 C 1.52996 * 109.46950 * 65.00084 * 16 15 13 19 19 C 1.50701 * 109.46883 * 184.99870 * 16 15 13 20 20 C 1.38245 * 119.97173 * 120.00168 * 19 16 15 21 21 C 1.38200 * 120.02250 * 179.97438 * 20 19 16 22 22 C 1.38460 * 119.97792 * 0.02562 * 21 20 19 23 23 F 1.35095 * 120.02839 * 179.97438 * 22 21 20 24 24 C 1.38460 * 119.94533 * 0.25185 * 22 21 20 25 25 C 1.38200 * 119.97528 * 359.46722 * 24 22 21 26 26 H 4.40636 * 5.51427 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47349 * 259.92666 * 3 2 1 28 28 H 1.09002 * 109.46868 * 139.92567 * 3 2 1 29 29 H 0.97004 * 119.99685 * 185.01665 * 8 7 5 30 30 H 1.09000 * 109.47053 * 60.72240 * 15 13 4 31 31 H 1.08996 * 109.46747 * 300.72091 * 15 13 4 32 32 H 1.09006 * 109.47453 * 179.97438 * 18 16 15 33 33 H 1.09000 * 109.47142 * 299.99491 * 18 16 15 34 34 H 1.08997 * 109.47517 * 59.99627 * 18 16 15 35 35 H 1.08000 * 119.98670 * 0.02562 * 20 19 16 36 36 H 1.07998 * 120.01106 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.01447 * 179.74499 * 24 22 21 38 38 H 1.08000 * 119.99167 * 180.29860 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2976 -0.4708 5 6 3.3639 -2.3097 0.4251 6 1 4.0325 -3.1180 0.1676 7 6 2.7359 -2.2958 1.6645 8 7 2.0446 -1.2428 2.0390 9 14 2.8742 -3.7739 2.7983 10 1 3.7019 -4.8212 2.1477 11 1 3.5122 -3.3611 4.0741 12 1 1.5189 -4.3142 3.0748 13 6 3.3597 -1.4970 -1.7847 14 8 3.2451 -0.5764 -2.5661 15 6 3.7532 -2.8637 -2.2829 16 6 3.9642 -2.8132 -3.7974 17 1 3.0684 -2.4174 -4.2760 18 6 5.1553 -1.9075 -4.1165 19 6 4.2372 -4.2026 -4.3132 20 6 3.3951 -4.7686 -5.2522 21 6 3.6448 -6.0425 -5.7263 22 6 4.7385 -6.7522 -5.2601 23 9 4.9832 -7.9977 -5.7224 24 6 5.5778 -6.1865 -4.3153 25 6 5.3295 -4.9102 -3.8470 26 1 -1.0498 -0.0004 0.0000 27 1 3.0092 0.1806 1.0118 28 1 3.0089 0.7872 -0.6616 29 1 1.6673 -1.2028 2.9318 30 1 2.9626 -3.5770 -2.0498 31 1 4.6781 -3.1749 -1.7974 32 1 5.3060 -1.8718 -5.1955 33 1 4.9578 -0.9026 -3.7434 34 1 6.0511 -2.3032 -3.6378 35 1 2.5424 -4.2146 -5.6161 36 1 2.9871 -6.4843 -6.4602 37 1 6.4288 -6.7406 -3.9478 38 1 5.9868 -4.4668 -3.1136 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281018742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:49 Heat of formation + Delta-G solvation = -9.821446 kcal Electronic energy + Delta-G solvation = -22297.869968 eV Core-core repulsion = 18828.139291 eV Total energy + Delta-G solvation = -3469.730677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.85017 -40.92663 -39.94888 -37.22629 -35.59355 -33.66998 -33.26251 -32.05470 -30.43876 -29.18703 -27.75606 -26.17171 -24.41017 -23.79068 -21.56908 -20.77413 -19.38017 -18.67130 -18.33080 -18.00408 -17.25437 -16.54756 -16.45139 -16.20837 -16.09330 -15.85031 -15.21066 -14.95060 -14.48327 -14.38365 -14.25839 -14.17199 -13.81804 -13.73926 -13.19742 -12.97542 -12.92781 -12.80475 -12.54459 -12.10926 -12.05684 -11.94245 -11.88883 -11.49344 -11.36614 -11.08156 -10.48951 -10.19527 -10.00729 -9.79263 -9.46254 -8.17141 -5.92425 0.20021 0.33252 1.42458 1.49428 1.60296 1.93715 2.14402 2.35248 2.45073 2.65475 3.16536 3.21261 3.33922 3.77974 3.82958 3.97845 4.02877 4.11858 4.30437 4.39968 4.44102 4.51736 4.64169 4.84060 4.90586 4.95471 5.04990 5.08025 5.15676 5.19990 5.22915 5.28515 5.34878 5.45169 5.48640 5.55767 5.71832 5.87749 5.98478 6.45101 7.12974 7.16701 7.60461 8.00220 8.75966 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.004489 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.871825 B = 6235.305810 C = 7223.423391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.132 4.132 3 C 0.237 3.763 4 N -0.457 5.457 5 C -0.349 4.349 6 H 0.114 0.886 7 C -0.004 4.004 8 N -0.888 5.888 9 Si 0.987 3.013 10 H -0.254 1.254 11 H -0.280 1.280 12 H -0.289 1.289 13 C 0.454 3.546 14 O -0.624 6.624 15 C -0.100 4.100 16 C -0.027 4.027 17 H 0.069 0.931 18 C -0.139 4.139 19 C -0.084 4.084 20 C -0.094 4.094 21 C -0.151 4.151 22 C 0.072 3.928 23 F -0.149 7.149 24 C -0.151 4.151 25 C -0.088 4.088 26 H 0.232 0.768 27 H 0.111 0.889 28 H 0.056 0.944 29 H 0.267 0.733 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 -8.513 -8.908 13.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.133 4.133 3 C 0.114 3.886 4 N -0.175 5.175 5 C -0.476 4.476 6 H 0.132 0.868 7 C -0.206 4.206 8 N -0.526 5.526 9 Si 0.812 3.188 10 H -0.177 1.177 11 H -0.205 1.205 12 H -0.216 1.216 13 C 0.245 3.755 14 O -0.512 6.512 15 C -0.140 4.140 16 C -0.046 4.046 17 H 0.087 0.913 18 C -0.196 4.196 19 C -0.084 4.084 20 C -0.112 4.112 21 C -0.170 4.170 22 C 0.053 3.947 23 F -0.128 7.128 24 C -0.170 4.170 25 C -0.106 4.106 26 H 0.249 0.751 27 H 0.128 0.872 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.585 -8.081 -9.125 13.023 hybrid contribution -0.431 -0.567 0.923 1.166 sum 4.154 -8.648 -8.202 12.622 Atomic orbital electron populations 1.25085 0.96368 1.02158 1.05894 1.23649 0.95236 0.98487 0.95951 1.18181 0.84312 0.85744 1.00364 1.43936 1.56808 1.11286 1.05512 1.20051 1.26915 1.03585 0.97078 0.86834 1.26156 0.94446 1.00084 0.99949 1.70108 1.34272 1.28752 1.19493 0.84940 0.77640 0.78402 0.77856 1.17738 1.20531 1.21559 1.20957 0.81548 0.91464 0.81537 1.90482 1.59368 1.45811 1.55532 1.21412 1.03144 0.93830 0.95577 1.19770 0.99895 0.91442 0.93502 0.91279 1.21841 0.96559 0.99850 1.01378 1.20021 0.95597 0.95801 0.96977 1.21146 0.99411 0.94490 0.96128 1.21300 0.97636 0.95438 1.02611 1.17922 0.97805 0.80765 0.98242 1.91463 1.94245 1.39314 1.87787 1.21321 1.01027 0.96645 0.97957 1.21067 0.96996 0.93322 0.99227 0.75101 0.87172 0.92566 0.92242 0.90049 0.88735 0.92096 0.92776 0.92029 0.83954 0.83109 0.83103 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.38 19.25 74.32 1.43 -10.95 16 2 C -0.13 -6.56 11.44 31.12 0.36 -6.20 16 3 C 0.24 11.78 5.21 84.57 0.44 12.22 16 4 N -0.46 -22.42 2.58 -645.41 -1.67 -24.09 16 5 C -0.35 -16.69 9.11 84.04 0.77 -15.92 16 6 H 0.11 4.96 6.53 -2.91 -0.02 4.94 16 7 C 0.00 -0.21 5.40 84.92 0.46 0.25 16 8 N -0.89 -45.02 8.36 21.66 0.18 -44.83 16 9 Si 0.99 38.31 29.56 68.60 2.03 40.34 16 10 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 11 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 12 H -0.29 -11.58 7.11 99.48 0.71 -10.88 16 13 C 0.45 20.73 7.33 87.66 0.64 21.38 16 14 O -0.62 -30.96 13.55 -3.07 -0.04 -31.00 16 15 C -0.10 -3.57 3.55 29.85 0.11 -3.46 16 16 C -0.03 -0.83 2.21 -11.54 -0.03 -0.85 16 17 H 0.07 2.30 7.68 -2.39 -0.02 2.28 16 18 C -0.14 -4.12 8.75 71.98 0.63 -3.49 16 19 C -0.08 -2.13 4.78 -19.86 -0.09 -2.23 16 20 C -0.09 -2.16 9.67 22.26 0.22 -1.94 16 21 C -0.15 -3.23 10.03 22.31 0.22 -3.01 16 22 C 0.07 1.64 7.30 22.38 0.16 1.80 16 23 F -0.15 -3.54 17.27 44.97 0.78 -2.76 16 24 C -0.15 -3.24 10.03 22.31 0.22 -3.01 16 25 C -0.09 -2.02 8.76 22.26 0.19 -1.83 16 26 H 0.23 8.11 7.80 -4.43 -0.03 8.07 16 27 H 0.11 5.68 6.22 -2.39 -0.01 5.66 16 28 H 0.06 2.76 7.36 -2.39 -0.02 2.75 16 29 H 0.27 13.04 8.32 -92.71 -0.77 12.27 16 30 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.09 3.08 6.88 -2.39 -0.02 3.06 16 32 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.05 1.96 5.98 -2.39 -0.01 1.94 16 34 H 0.06 1.60 7.39 -2.39 -0.02 1.58 16 35 H 0.14 2.89 7.94 -2.91 -0.02 2.87 16 36 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 38 H 0.14 2.94 7.16 -2.91 -0.02 2.92 16 Total: -1.00 -59.07 327.09 8.07 -51.00 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 1.07 Total: 28.58 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 5.73 Total: -17.23 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.49 Total: -68.92 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.04 Total: -31.00 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -59.07 8.07 -51.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281018742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.178 kcal (2) G-P(sol) polarization free energy of solvation -59.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds