Wall clock time and date at job start Tue Mar 31 2020 05:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46977 * 254.91466 * 3 2 1 5 5 C 1.37098 * 120.00074 * 263.74306 * 4 3 2 6 6 H 1.07996 * 120.00178 * 188.79326 * 5 4 3 7 7 C 1.38950 * 119.99985 * 8.78250 * 5 4 3 8 8 N 1.31415 * 119.99516 * 28.45060 * 7 5 4 9 9 Si 1.86800 * 120.00398 * 208.44687 * 7 5 4 10 10 H 1.48496 * 109.46893 * 94.99752 * 9 7 5 11 11 H 1.48504 * 109.47007 * 214.99725 * 9 7 5 12 12 H 1.48501 * 109.47113 * 334.99579 * 9 7 5 13 13 C 1.34779 * 120.00472 * 83.74569 * 4 3 2 14 14 O 1.21291 * 120.00367 * 175.07510 * 13 4 3 15 15 C 1.50702 * 119.99356 * 355.07919 * 13 4 3 16 16 H 1.09000 * 109.47228 * 334.91980 * 15 13 4 17 17 C 1.53007 * 109.46864 * 214.92455 * 15 13 4 18 18 C 1.53006 * 109.46919 * 65.06033 * 17 15 13 19 19 C 1.50692 * 109.47313 * 94.92584 * 15 13 4 20 20 C 1.38249 * 119.97580 * 239.99598 * 19 15 13 21 21 C 1.38202 * 120.02609 * 180.02562 * 20 19 15 22 22 C 1.38453 * 119.97166 * 359.97438 * 21 20 19 23 23 F 1.35102 * 120.02455 * 180.02562 * 22 21 20 24 24 C 1.38459 * 119.95363 * 0.02562 * 22 21 20 25 25 C 1.38193 * 119.97261 * 0.02562 * 24 22 21 26 26 H 4.40631 * 5.51477 * 179.97438 * 4 1 2 27 27 H 1.08997 * 109.47153 * 134.91376 * 3 2 1 28 28 H 1.09006 * 109.47440 * 14.91411 * 3 2 1 29 29 H 0.97004 * 119.99935 * 180.02562 * 8 7 5 30 30 H 1.08988 * 109.47288 * 185.05779 * 17 15 13 31 31 H 1.09000 * 109.47078 * 305.06602 * 17 15 13 32 32 H 1.09001 * 109.46857 * 304.39506 * 18 17 15 33 33 H 1.08997 * 109.47020 * 64.39895 * 18 17 15 34 34 H 1.08999 * 109.46599 * 184.39910 * 18 17 15 35 35 H 1.07996 * 119.98630 * 0.27248 * 20 19 15 36 36 H 1.07996 * 120.00802 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.01312 * 179.97438 * 24 22 21 38 38 H 1.08007 * 119.98717 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3603 1.3336 5 6 3.4840 1.6570 1.6088 6 1 3.9752 1.8978 2.5400 7 6 3.2068 2.6615 0.6896 8 7 2.1830 2.5418 -0.1255 9 14 4.2893 4.1819 0.6126 10 1 5.3264 3.9986 -0.4343 11 1 3.4565 5.3663 0.2823 12 1 4.9455 4.3896 1.9285 13 6 3.2393 -0.5834 2.2900 14 8 3.7266 -0.3055 3.3654 15 6 2.7514 -1.9841 2.0232 16 1 1.9819 -1.9600 1.2516 17 6 2.1667 -2.5740 3.3082 18 6 0.9209 -1.7827 3.7118 19 6 3.9031 -2.8371 1.5576 20 6 3.8580 -3.4397 0.3142 21 6 4.9134 -4.2226 -0.1137 22 6 6.0166 -4.4029 0.7034 23 9 7.0492 -5.1676 0.2860 24 6 6.0607 -3.7989 1.9485 25 6 5.0037 -3.0173 2.3746 26 1 -1.0500 0.0002 -0.0001 27 1 3.0090 0.7264 -0.7277 28 1 3.0098 -0.9923 -0.2645 29 1 1.9896 3.2428 -0.7675 30 1 1.8963 -3.6162 3.1394 31 1 2.9082 -2.5154 4.1050 32 1 1.1754 -0.7269 3.8047 33 1 0.1503 -1.9052 2.9507 34 1 0.5496 -2.1524 4.6676 35 1 2.9993 -3.2953 -0.3247 36 1 4.8780 -4.6928 -1.0852 37 1 6.9206 -3.9392 2.5868 38 1 5.0377 -2.5464 3.3460 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281026853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:55 Heat of formation + Delta-G solvation = 4.012737 kcal Electronic energy + Delta-G solvation = -23125.164554 eV Core-core repulsion = 19656.033772 eV Total energy + Delta-G solvation = -3469.130782 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.76992 -39.82207 -38.10576 -35.45044 -34.07593 -32.16853 -31.30123 -30.96824 -30.46144 -26.89886 -26.26563 -24.51760 -22.99724 -21.93129 -21.41730 -18.59298 -17.94349 -17.53061 -16.89034 -16.44403 -15.91826 -15.47453 -15.43519 -14.73927 -14.31493 -14.20685 -13.83104 -13.40103 -13.39323 -13.19197 -12.96318 -12.53641 -12.31223 -12.15533 -11.85911 -11.76251 -11.65263 -11.10891 -10.96803 -10.69712 -10.65138 -10.52627 -10.33657 -10.29406 -9.45632 -9.31126 -8.98041 -8.92095 -8.71648 -8.11709 -7.93910 -6.44547 -3.83109 1.28570 1.39854 3.11558 3.24576 3.29274 3.59564 3.69860 3.84248 3.94556 4.13819 4.39723 4.73308 4.91041 4.96450 5.00892 5.09404 5.33276 5.41582 5.47221 5.50250 5.59135 5.73663 5.90016 6.01334 6.11646 6.17923 6.20613 6.24631 6.27828 6.36657 6.44305 6.58077 6.73933 6.76770 6.81589 6.94179 7.05273 7.52313 7.98979 8.38063 8.67442 9.09261 9.32887 9.87623 10.58049 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.005795 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.685496 B = 4830.401482 C = 5421.511918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.121 4.121 3 C 0.223 3.777 4 N -0.435 5.435 5 C -0.318 4.318 6 H 0.108 0.892 7 C 0.034 3.966 8 N -0.854 5.854 9 Si 0.913 3.087 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.460 3.540 14 O -0.580 6.580 15 C -0.068 4.068 16 H 0.090 0.910 17 C -0.096 4.096 18 C -0.150 4.150 19 C -0.071 4.071 20 C -0.090 4.090 21 C -0.154 4.154 22 C 0.085 3.915 23 F -0.146 7.146 24 C -0.153 4.153 25 C -0.072 4.072 26 H 0.201 0.799 27 H 0.118 0.882 28 H 0.062 0.938 29 H 0.269 0.731 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 -11.387 -1.376 11.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.122 4.122 3 C 0.100 3.900 4 N -0.152 5.152 5 C -0.445 4.445 6 H 0.126 0.874 7 C -0.171 4.171 8 N -0.492 5.492 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.249 3.751 14 O -0.465 6.465 15 C -0.090 4.090 16 H 0.109 0.891 17 C -0.134 4.134 18 C -0.207 4.207 19 C -0.071 4.071 20 C -0.108 4.108 21 C -0.173 4.173 22 C 0.066 3.934 23 F -0.125 7.125 24 C -0.172 4.172 25 C -0.090 4.090 26 H 0.218 0.782 27 H 0.136 0.864 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.712 -11.122 -1.013 11.191 hybrid contribution 0.250 0.835 -0.467 0.989 sum 0.962 -10.287 -1.480 10.437 Atomic orbital electron populations 1.24345 0.95416 1.05612 1.02102 1.23324 0.94448 0.95948 0.98513 1.18520 0.84058 0.99391 0.88081 1.43759 1.55129 1.08055 1.08257 1.19703 1.36741 0.81934 1.06080 0.87384 1.25198 0.95679 0.99152 0.97056 1.70200 1.22056 1.34889 1.22043 0.86120 0.80293 0.80602 0.79046 1.20330 1.21140 1.19265 1.19629 0.85040 0.85893 0.84554 1.90499 1.49355 1.81803 1.24825 1.20410 0.95339 0.93533 0.99684 0.89150 1.21329 0.97974 0.98087 0.96041 1.21742 0.97062 1.01657 1.00244 1.19796 0.95977 0.97146 0.94228 1.20968 0.98223 0.96079 0.95539 1.21030 0.93612 1.02226 1.00403 1.17707 0.85895 0.95174 0.94641 1.91465 1.57118 1.73499 1.90439 1.21122 1.00625 1.00012 0.95395 1.21079 0.91705 0.95627 1.00629 0.78205 0.86418 0.92051 0.92088 0.92191 0.90800 0.91737 0.93158 0.93134 0.84995 0.84986 0.84998 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.98 19.25 29.55 0.57 -4.41 16 2 C -0.12 -2.57 10.78 -37.12 -0.40 -2.97 16 3 C 0.22 4.81 4.79 -6.83 -0.03 4.78 16 4 N -0.43 -10.60 2.61 -117.93 -0.31 -10.90 16 5 C -0.32 -8.52 9.40 -14.93 -0.14 -8.66 16 6 H 0.11 3.08 7.33 -52.49 -0.38 2.70 16 7 C 0.03 0.86 4.79 -17.47 -0.08 0.78 16 8 N -0.85 -21.78 9.73 55.50 0.54 -21.24 16 9 Si 0.91 20.09 29.64 -169.99 -5.04 15.05 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 13 C 0.46 10.52 5.18 -10.98 -0.06 10.46 16 14 O -0.58 -14.92 15.08 5.55 0.08 -14.84 16 15 C -0.07 -1.21 1.57 -92.92 -0.15 -1.36 16 16 H 0.09 1.58 5.44 -51.93 -0.28 1.30 16 17 C -0.10 -1.56 4.90 -26.72 -0.13 -1.69 16 18 C -0.15 -2.46 9.80 37.16 0.36 -2.10 16 19 C -0.07 -1.14 4.56 -104.62 -0.48 -1.61 16 20 C -0.09 -1.25 8.80 -39.59 -0.35 -1.60 16 21 C -0.15 -2.02 10.03 -39.52 -0.40 -2.41 16 22 C 0.08 1.20 7.30 -39.42 -0.29 0.91 16 23 F -0.15 -2.06 17.27 2.25 0.04 -2.02 16 24 C -0.15 -2.17 10.03 -39.52 -0.40 -2.57 16 25 C -0.07 -1.15 8.85 -39.59 -0.35 -1.50 16 26 H 0.20 3.12 7.80 -54.09 -0.42 2.70 16 27 H 0.12 2.73 5.99 -51.93 -0.31 2.42 16 28 H 0.06 1.13 5.78 -51.93 -0.30 0.83 16 29 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 30 H 0.06 0.82 8.14 -51.94 -0.42 0.40 16 31 H 0.07 1.25 7.10 -51.93 -0.37 0.88 16 32 H 0.06 1.29 7.12 -51.93 -0.37 0.92 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.13 1.59 7.76 -52.49 -0.41 1.18 16 36 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 38 H 0.14 2.34 7.15 -52.48 -0.38 1.97 16 LS Contribution 325.99 15.07 4.91 4.91 Total: -1.00 -29.19 325.99 -6.55 -35.74 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.47 Total: 7.26 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.31 Total: -13.96 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.23 Total: -32.14 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.08 Total: -14.84 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.04 Total: 15.05 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.19 -6.55 -35.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281026853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.753 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds