Wall clock time and date at job start Tue Mar 31 2020 05:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46977 * 254.91466 * 3 2 1 5 5 C 1.37098 * 120.00074 * 263.74306 * 4 3 2 6 6 H 1.07996 * 120.00178 * 188.79326 * 5 4 3 7 7 C 1.38950 * 119.99985 * 8.78250 * 5 4 3 8 8 N 1.31415 * 119.99516 * 28.45060 * 7 5 4 9 9 Si 1.86800 * 120.00398 * 208.44687 * 7 5 4 10 10 H 1.48496 * 109.46893 * 94.99752 * 9 7 5 11 11 H 1.48504 * 109.47007 * 214.99725 * 9 7 5 12 12 H 1.48501 * 109.47113 * 334.99579 * 9 7 5 13 13 C 1.34779 * 120.00472 * 83.74569 * 4 3 2 14 14 O 1.21291 * 120.00367 * 175.07510 * 13 4 3 15 15 C 1.50702 * 119.99356 * 355.07919 * 13 4 3 16 16 H 1.09000 * 109.47228 * 334.91980 * 15 13 4 17 17 C 1.53007 * 109.46864 * 214.92455 * 15 13 4 18 18 C 1.53006 * 109.46919 * 65.06033 * 17 15 13 19 19 C 1.50692 * 109.47313 * 94.92584 * 15 13 4 20 20 C 1.38249 * 119.97580 * 239.99598 * 19 15 13 21 21 C 1.38202 * 120.02609 * 180.02562 * 20 19 15 22 22 C 1.38453 * 119.97166 * 359.97438 * 21 20 19 23 23 F 1.35102 * 120.02455 * 180.02562 * 22 21 20 24 24 C 1.38459 * 119.95363 * 0.02562 * 22 21 20 25 25 C 1.38193 * 119.97261 * 0.02562 * 24 22 21 26 26 H 4.40631 * 5.51477 * 179.97438 * 4 1 2 27 27 H 1.08997 * 109.47153 * 134.91376 * 3 2 1 28 28 H 1.09006 * 109.47440 * 14.91411 * 3 2 1 29 29 H 0.97004 * 119.99935 * 180.02562 * 8 7 5 30 30 H 1.08988 * 109.47288 * 185.05779 * 17 15 13 31 31 H 1.09000 * 109.47078 * 305.06602 * 17 15 13 32 32 H 1.09001 * 109.46857 * 304.39506 * 18 17 15 33 33 H 1.08997 * 109.47020 * 64.39895 * 18 17 15 34 34 H 1.08999 * 109.46599 * 184.39910 * 18 17 15 35 35 H 1.07996 * 119.98630 * 0.27248 * 20 19 15 36 36 H 1.07996 * 120.00802 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.01312 * 179.97438 * 24 22 21 38 38 H 1.08007 * 119.98717 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3603 1.3336 5 6 3.4840 1.6570 1.6088 6 1 3.9752 1.8978 2.5400 7 6 3.2068 2.6615 0.6896 8 7 2.1830 2.5418 -0.1255 9 14 4.2893 4.1819 0.6126 10 1 5.3264 3.9986 -0.4343 11 1 3.4565 5.3663 0.2823 12 1 4.9455 4.3896 1.9285 13 6 3.2393 -0.5834 2.2900 14 8 3.7266 -0.3055 3.3654 15 6 2.7514 -1.9841 2.0232 16 1 1.9819 -1.9600 1.2516 17 6 2.1667 -2.5740 3.3082 18 6 0.9209 -1.7827 3.7118 19 6 3.9031 -2.8371 1.5576 20 6 3.8580 -3.4397 0.3142 21 6 4.9134 -4.2226 -0.1137 22 6 6.0166 -4.4029 0.7034 23 9 7.0492 -5.1676 0.2860 24 6 6.0607 -3.7989 1.9485 25 6 5.0037 -3.0173 2.3746 26 1 -1.0500 0.0002 -0.0001 27 1 3.0090 0.7264 -0.7277 28 1 3.0098 -0.9923 -0.2645 29 1 1.9896 3.2428 -0.7675 30 1 1.8963 -3.6162 3.1394 31 1 2.9082 -2.5154 4.1050 32 1 1.1754 -0.7269 3.8047 33 1 0.1503 -1.9052 2.9507 34 1 0.5496 -2.1524 4.6676 35 1 2.9993 -3.2953 -0.3247 36 1 4.8780 -4.6928 -1.0852 37 1 6.9206 -3.9392 2.5868 38 1 5.0377 -2.5464 3.3460 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281026853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:54 Heat of formation + Delta-G solvation = -10.265421 kcal Electronic energy + Delta-G solvation = -23125.783702 eV Core-core repulsion = 19656.033772 eV Total energy + Delta-G solvation = -3469.749929 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.87190 -41.30245 -39.53475 -37.21062 -35.55860 -33.97047 -33.01506 -32.09987 -31.69977 -28.54573 -27.79537 -26.25451 -24.14186 -23.19898 -22.84608 -20.16369 -19.68802 -18.65885 -18.52961 -18.07410 -17.18199 -16.87189 -16.57923 -16.42364 -15.98751 -15.69207 -15.21199 -14.92990 -14.58093 -14.48981 -14.31154 -14.01021 -13.81534 -13.67845 -13.53801 -13.25799 -13.06314 -12.81753 -12.44337 -12.24148 -12.13738 -11.98044 -11.89727 -11.68273 -11.13346 -11.06045 -10.65092 -10.35672 -10.04339 -9.83706 -9.46125 -8.38202 -5.83925 0.12662 0.29230 1.34072 1.42388 1.52773 1.91753 2.12287 2.32108 2.35098 2.59799 2.99858 3.21690 3.29044 3.71512 3.78629 3.85990 3.97506 4.03934 4.09884 4.29845 4.39342 4.41252 4.56287 4.64219 4.72374 4.90902 4.99315 5.00968 5.03028 5.08377 5.15572 5.25572 5.31256 5.39457 5.42081 5.50011 5.60775 5.92724 6.06366 6.46198 7.10713 7.17292 7.46713 8.04163 8.62678 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.005795 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.685496 B = 4830.401482 C = 5421.511918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.164 4.164 3 C 0.228 3.772 4 N -0.450 5.450 5 C -0.355 4.355 6 H 0.075 0.925 7 C 0.009 3.991 8 N -0.863 5.863 9 Si 0.971 3.029 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.457 3.543 14 O -0.621 6.621 15 C -0.055 4.055 16 H 0.098 0.902 17 C -0.095 4.095 18 C -0.145 4.145 19 C -0.087 4.087 20 C -0.086 4.086 21 C -0.144 4.144 22 C 0.081 3.919 23 F -0.145 7.145 24 C -0.154 4.154 25 C -0.087 4.087 26 H 0.236 0.764 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.273 0.727 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.147 0.853 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 -12.899 -3.112 13.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.166 4.166 3 C 0.105 3.895 4 N -0.168 5.168 5 C -0.482 4.482 6 H 0.093 0.907 7 C -0.195 4.195 8 N -0.500 5.500 9 Si 0.795 3.205 10 H -0.192 1.192 11 H -0.202 1.202 12 H -0.204 1.204 13 C 0.247 3.753 14 O -0.508 6.508 15 C -0.076 4.076 16 H 0.117 0.883 17 C -0.133 4.133 18 C -0.202 4.202 19 C -0.088 4.088 20 C -0.103 4.103 21 C -0.163 4.163 22 C 0.062 3.938 23 F -0.124 7.124 24 C -0.173 4.173 25 C -0.105 4.105 26 H 0.253 0.747 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.173 0.827 36 H 0.181 0.819 37 H 0.165 0.835 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.086 -12.647 -2.775 12.948 hybrid contribution 0.476 1.266 0.093 1.356 sum 0.391 -11.381 -2.682 11.699 Atomic orbital electron populations 1.25213 0.96317 1.03644 1.00020 1.23469 0.94916 0.97790 1.00393 1.18459 0.84773 1.00115 0.86121 1.43922 1.55664 1.07484 1.09690 1.19510 1.38760 0.83963 1.05980 0.90726 1.25774 0.96195 1.01148 0.96373 1.70255 1.22148 1.35618 1.21936 0.85271 0.78881 0.77783 0.78533 1.19224 1.20228 1.20399 1.20523 0.83486 0.87615 0.83649 1.90459 1.50825 1.83003 1.26519 1.20293 0.96121 0.90444 1.00771 0.88345 1.21371 0.97291 0.99779 0.94836 1.21704 0.97625 0.98849 1.02063 1.19735 0.95482 0.98095 0.95512 1.21180 0.99219 0.95379 0.94570 1.21341 0.92472 1.01182 1.01268 1.17848 0.86280 0.95028 0.94656 1.91472 1.57147 1.73408 1.90358 1.21240 1.00573 0.99459 0.95984 1.20983 0.92699 0.96603 1.00260 0.74705 0.88513 0.89227 0.91688 0.88712 0.92291 0.96240 0.91866 0.90847 0.82690 0.81942 0.83522 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.56 19.25 74.32 1.43 -7.13 16 2 C -0.16 -6.83 10.78 31.13 0.34 -6.49 16 3 C 0.23 9.83 4.79 84.58 0.40 10.24 16 4 N -0.45 -22.61 2.61 -645.42 -1.68 -24.29 16 5 C -0.36 -19.89 9.40 84.04 0.79 -19.10 16 6 H 0.07 4.57 7.33 -2.91 -0.02 4.55 16 7 C 0.01 0.48 4.79 84.93 0.41 0.89 16 8 N -0.86 -44.06 9.73 21.66 0.21 -43.85 16 9 Si 0.97 41.83 29.64 68.60 2.03 43.86 16 10 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 11 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 13 C 0.46 21.61 5.18 87.66 0.45 22.07 16 14 O -0.62 -33.86 15.08 -3.06 -0.05 -33.90 16 15 C -0.05 -1.94 1.57 -12.29 -0.02 -1.96 16 16 H 0.10 3.29 5.44 -2.39 -0.01 3.28 16 17 C -0.10 -3.01 4.90 30.60 0.15 -2.86 16 18 C -0.15 -4.70 9.80 71.98 0.71 -3.99 16 19 C -0.09 -2.72 4.56 -19.86 -0.09 -2.81 16 20 C -0.09 -2.14 8.80 22.26 0.20 -1.94 16 21 C -0.14 -3.30 10.03 22.31 0.22 -3.08 16 22 C 0.08 2.10 7.30 22.37 0.16 2.26 16 23 F -0.15 -3.73 17.27 44.97 0.78 -2.95 16 24 C -0.15 -4.22 10.03 22.31 0.22 -4.00 16 25 C -0.09 -2.77 8.85 22.26 0.20 -2.57 16 26 H 0.24 6.47 7.80 -4.42 -0.03 6.44 16 27 H 0.10 4.54 5.99 -2.39 -0.01 4.52 16 28 H 0.09 3.22 5.78 -2.38 -0.01 3.21 16 29 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.06 2.04 7.10 -2.39 -0.02 2.02 16 32 H 0.02 0.78 7.12 -2.39 -0.02 0.76 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.16 3.13 7.76 -2.91 -0.02 3.11 16 36 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.12 4.27 7.15 -2.91 -0.02 4.25 16 Total: -1.00 -65.57 325.99 7.94 -57.63 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 1.07 Total: 23.97 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 5.57 Total: -20.47 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -1.47 Total: -68.14 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.05 Total: -33.90 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.78 Total: -2.95 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -65.57 7.94 -57.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281026853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.366 kcal (2) G-P(sol) polarization free energy of solvation -65.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds