Wall clock time and date at job start Tue Mar 31 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47370 * 283.14087 * 3 2 1 5 5 C 1.36933 * 120.00297 * 264.23314 * 4 3 2 6 6 H 1.08004 * 119.99979 * 196.86069 * 5 4 3 7 7 C 1.38810 * 120.00303 * 16.86520 * 5 4 3 8 8 N 1.31622 * 119.99926 * 22.15228 * 7 5 4 9 9 Si 1.86799 * 120.00124 * 202.15972 * 7 5 4 10 10 H 1.48497 * 109.47131 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46867 * 119.99565 * 9 7 5 12 12 H 1.48498 * 109.46996 * 239.99410 * 9 7 5 13 13 C 1.46506 * 119.99600 * 84.23045 * 4 3 2 14 14 C 1.52995 * 109.47111 * 270.00296 * 13 4 3 15 15 C 1.53004 * 109.47230 * 180.02562 * 14 13 4 16 16 S 1.81396 * 109.47425 * 179.97438 * 15 14 13 17 17 C 1.81398 * 103.00152 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47291 * 180.02562 * 17 16 15 19 19 C 1.38232 * 120.00635 * 89.99525 * 18 17 16 20 20 C 1.38232 * 120.00579 * 179.97438 * 19 18 17 21 21 C 1.38231 * 119.99720 * 359.97438 * 20 19 18 22 22 C 1.38236 * 120.00031 * 0.28290 * 21 20 19 23 23 C 1.38234 * 119.99957 * 359.50625 * 22 21 20 24 24 H 4.40639 * 5.51454 * 179.97438 * 4 1 2 25 25 H 1.09008 * 109.47317 * 163.14677 * 3 2 1 26 26 H 1.08996 * 109.47699 * 43.14943 * 3 2 1 27 27 H 0.96997 * 120.00243 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.46779 * 150.00085 * 13 4 3 29 29 H 1.08997 * 109.47025 * 30.00308 * 13 4 3 30 30 H 1.08997 * 109.47548 * 59.99943 * 14 13 4 31 31 H 1.08997 * 109.47186 * 299.99913 * 14 13 4 32 32 H 1.08997 * 109.47104 * 59.99423 * 15 14 13 33 33 H 1.08997 * 109.46763 * 299.99925 * 15 14 13 34 34 H 1.09002 * 109.47223 * 59.99709 * 17 16 15 35 35 H 1.09002 * 109.47092 * 299.99773 * 17 16 15 36 36 H 1.08003 * 119.99615 * 359.97438 * 19 18 17 37 37 H 1.07998 * 120.00234 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.00089 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.00104 * 179.71961 * 22 21 20 40 40 H 1.08007 * 119.99987 * 180.27453 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.3131 1.3450 5 6 3.4746 0.6982 2.2032 6 1 4.0795 0.4880 3.0729 7 6 3.0419 1.9937 1.9556 8 7 1.9882 2.2015 1.1947 9 14 3.9552 3.4422 2.7020 10 1 5.0959 2.9441 3.5117 11 1 4.4635 4.3193 1.6167 12 1 3.0317 4.2149 3.5712 13 6 3.2590 -1.7091 1.7719 14 6 1.9493 -2.1632 2.4193 15 6 2.0795 -3.6209 2.8657 16 16 0.5269 -4.1591 3.6340 17 6 0.8719 -5.8810 4.0883 18 6 -0.3432 -6.4793 4.7490 19 6 -1.3027 -7.1160 3.9844 20 6 -2.4171 -7.6653 4.5905 21 6 -2.5716 -7.5784 5.9614 22 6 -1.6147 -6.9371 6.7255 23 6 -0.4982 -6.3916 6.1198 24 1 -1.0500 0.0002 0.0002 25 1 3.0089 0.9844 -0.2980 26 1 3.0097 -0.7489 -0.7028 27 1 1.6860 3.1067 1.0213 28 1 4.0709 -1.7971 2.4939 29 1 3.4729 -2.3360 0.9063 30 1 1.1374 -2.0751 1.6974 31 1 1.7354 -1.5363 3.2849 32 1 2.8913 -3.7086 3.5877 33 1 2.2937 -4.2480 2.0003 34 1 1.7143 -5.9127 4.7793 35 1 1.1156 -6.4515 3.1920 36 1 -1.1818 -7.1843 2.9133 37 1 -3.1665 -8.1631 3.9931 38 1 -3.4420 -8.0079 6.4350 39 1 -1.7376 -6.8652 7.7961 40 1 0.2517 -5.8944 6.7174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281323524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:19 Heat of formation + Delta-G solvation = 94.033572 kcal Electronic energy + Delta-G solvation = -19171.711123 eV Core-core repulsion = 16272.697113 eV Total energy + Delta-G solvation = -2899.014009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.35189 -36.48547 -33.24047 -32.99628 -31.52034 -31.07165 -30.44948 -27.32740 -26.30319 -25.62505 -22.75499 -22.41500 -21.47090 -20.30397 -17.44830 -17.05978 -16.43874 -15.92705 -15.48382 -15.33503 -15.00358 -14.74290 -14.14062 -13.68493 -13.63348 -13.47417 -13.34790 -12.98802 -12.82118 -12.50859 -11.91495 -11.67863 -11.38297 -11.22876 -11.17185 -11.09742 -10.93275 -10.75584 -10.25231 -10.15623 -9.86734 -9.75494 -9.09618 -8.88205 -8.79544 -8.74980 -8.38423 -7.49211 -7.00067 -5.78340 -3.18369 0.92045 1.23446 2.02527 2.79463 3.37396 3.45857 3.47699 3.69439 4.20748 4.42753 4.49539 4.55589 4.59874 4.82129 4.94139 5.01563 5.27623 5.29457 5.30005 5.37179 5.38355 5.44655 5.72779 5.79489 5.86096 5.87245 5.99661 6.05263 6.26555 6.31364 6.32590 6.40551 6.42466 6.70699 6.80416 6.83505 7.09124 7.24714 7.46992 7.76340 8.29034 9.11349 9.23354 9.77902 10.23748 11.25294 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024553 B = 0.002893 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.103960 B = 9675.626233 C = 9985.829736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.095 4.095 3 C 0.266 3.734 4 N -0.585 5.585 5 C -0.264 4.264 6 H 0.076 0.924 7 C 0.003 3.997 8 N -0.887 5.887 9 Si 0.900 3.100 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.292 1.292 13 C 0.156 3.844 14 C -0.125 4.125 15 C -0.077 4.077 16 S -0.256 6.256 17 C -0.054 4.054 18 C -0.067 4.067 19 C -0.103 4.103 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.103 4.103 24 H 0.189 0.811 25 H 0.097 0.903 26 H 0.036 0.964 27 H 0.254 0.746 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.000 -19.205 5.320 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 C -0.098 4.098 3 C 0.141 3.859 4 N -0.304 5.304 5 C -0.393 4.393 6 H 0.094 0.906 7 C -0.197 4.197 8 N -0.530 5.530 9 Si 0.729 3.271 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.219 1.219 13 C 0.027 3.973 14 C -0.166 4.166 15 C -0.226 4.226 16 S -0.026 6.026 17 C -0.201 4.201 18 C -0.068 4.068 19 C -0.123 4.123 20 C -0.139 4.139 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.123 4.123 24 H 0.206 0.794 25 H 0.114 0.886 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.897 -18.423 5.413 19.816 hybrid contribution 0.923 0.284 0.395 1.043 sum -3.974 -18.139 5.808 19.457 Atomic orbital electron populations 1.24168 0.95336 1.07529 1.04936 1.24280 0.95279 0.94292 0.95981 1.17841 0.82891 0.99820 0.85340 1.44253 1.74393 1.00529 1.11200 1.19258 1.26193 0.86741 1.07108 0.90633 1.24920 0.96467 0.98226 1.00059 1.70148 1.21475 1.19979 1.41386 0.86269 0.79498 0.82945 0.78349 1.20316 1.21538 1.21909 1.20896 0.93908 0.85984 0.96500 1.22161 1.02215 0.90211 1.02046 1.23547 0.95523 1.01978 1.01593 1.87425 1.25287 1.11218 1.78643 1.22284 0.98414 0.96465 1.02981 1.19284 0.95603 0.98226 0.93698 1.21062 0.93775 0.97557 0.99878 1.21128 0.97725 1.00114 0.94938 1.21171 0.99085 0.99539 0.94148 1.21134 0.94360 0.98442 0.99960 1.21072 0.98190 0.98978 0.94024 0.79387 0.88558 0.94579 0.93581 0.93262 0.94131 0.91379 0.91167 0.90629 0.90761 0.89484 0.89515 0.85836 0.85967 0.86135 0.85960 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.02 19.25 29.55 0.57 -6.45 16 2 C -0.10 -2.34 10.54 -37.12 -0.39 -2.73 16 3 C 0.27 6.31 5.45 -6.83 -0.04 6.27 16 4 N -0.58 -14.11 2.50 -176.57 -0.44 -14.56 16 5 C -0.26 -7.02 9.66 -15.06 -0.15 -7.16 16 6 H 0.08 1.98 7.90 -52.48 -0.41 1.56 16 7 C 0.00 0.07 4.85 -17.43 -0.08 -0.02 16 8 N -0.89 -25.23 9.50 55.49 0.53 -24.70 16 9 Si 0.90 21.45 29.61 -169.99 -5.03 16.41 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 C 0.16 3.07 5.70 -4.04 -0.02 3.05 16 14 C -0.12 -2.39 5.40 -26.73 -0.14 -2.53 16 15 C -0.08 -1.16 5.94 37.16 0.22 -0.94 16 16 S -0.26 -3.89 21.72 -107.50 -2.33 -6.23 16 17 C -0.05 -0.61 6.07 36.00 0.22 -0.40 16 18 C -0.07 -0.76 5.14 -104.63 -0.54 -1.30 16 19 C -0.10 -1.09 9.70 -39.59 -0.38 -1.48 16 20 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 21 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.10 -1.10 9.70 -39.58 -0.38 -1.49 16 24 H 0.19 3.77 7.80 -54.09 -0.42 3.35 16 25 H 0.10 2.48 6.42 -51.92 -0.33 2.15 16 26 H 0.04 0.74 7.98 -51.93 -0.41 0.33 16 27 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.05 0.93 8.03 -51.93 -0.42 0.51 16 29 H 0.04 0.71 7.95 -51.93 -0.41 0.30 16 30 H 0.07 1.45 7.20 -51.93 -0.37 1.08 16 31 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 0.89 8.09 -51.92 -0.42 0.47 16 35 H 0.09 0.88 8.08 -51.92 -0.42 0.46 16 36 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 LS Contribution 354.66 15.07 5.34 5.34 Total: -1.00 -30.24 354.66 -10.40 -40.64 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.14 Total: 2.83 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -2.32 Total: -19.75 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.08 Total: -39.26 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.41 kcal Atomic # 16 Polarization: -3.89 SS G_CDS: -2.33 Total: -6.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.24 -10.40 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281323524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.675 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds