Wall clock time and date at job start Tue Mar 31 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47370 * 283.14087 * 3 2 1 5 5 C 1.36933 * 120.00297 * 264.23314 * 4 3 2 6 6 H 1.08004 * 119.99979 * 196.86069 * 5 4 3 7 7 C 1.38810 * 120.00303 * 16.86520 * 5 4 3 8 8 N 1.31622 * 119.99926 * 22.15228 * 7 5 4 9 9 Si 1.86799 * 120.00124 * 202.15972 * 7 5 4 10 10 H 1.48497 * 109.47131 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46867 * 119.99565 * 9 7 5 12 12 H 1.48498 * 109.46996 * 239.99410 * 9 7 5 13 13 C 1.46506 * 119.99600 * 84.23045 * 4 3 2 14 14 C 1.52995 * 109.47111 * 270.00296 * 13 4 3 15 15 C 1.53004 * 109.47230 * 180.02562 * 14 13 4 16 16 S 1.81396 * 109.47425 * 179.97438 * 15 14 13 17 17 C 1.81398 * 103.00152 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47291 * 180.02562 * 17 16 15 19 19 C 1.38232 * 120.00635 * 89.99525 * 18 17 16 20 20 C 1.38232 * 120.00579 * 179.97438 * 19 18 17 21 21 C 1.38231 * 119.99720 * 359.97438 * 20 19 18 22 22 C 1.38236 * 120.00031 * 0.28290 * 21 20 19 23 23 C 1.38234 * 119.99957 * 359.50625 * 22 21 20 24 24 H 4.40639 * 5.51454 * 179.97438 * 4 1 2 25 25 H 1.09008 * 109.47317 * 163.14677 * 3 2 1 26 26 H 1.08996 * 109.47699 * 43.14943 * 3 2 1 27 27 H 0.96997 * 120.00243 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.46779 * 150.00085 * 13 4 3 29 29 H 1.08997 * 109.47025 * 30.00308 * 13 4 3 30 30 H 1.08997 * 109.47548 * 59.99943 * 14 13 4 31 31 H 1.08997 * 109.47186 * 299.99913 * 14 13 4 32 32 H 1.08997 * 109.47104 * 59.99423 * 15 14 13 33 33 H 1.08997 * 109.46763 * 299.99925 * 15 14 13 34 34 H 1.09002 * 109.47223 * 59.99709 * 17 16 15 35 35 H 1.09002 * 109.47092 * 299.99773 * 17 16 15 36 36 H 1.08003 * 119.99615 * 359.97438 * 19 18 17 37 37 H 1.07998 * 120.00234 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.00089 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.00104 * 179.71961 * 22 21 20 40 40 H 1.08007 * 119.99987 * 180.27453 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.3131 1.3450 5 6 3.4746 0.6982 2.2032 6 1 4.0795 0.4880 3.0729 7 6 3.0419 1.9937 1.9556 8 7 1.9882 2.2015 1.1947 9 14 3.9552 3.4422 2.7020 10 1 5.0959 2.9441 3.5117 11 1 4.4635 4.3193 1.6167 12 1 3.0317 4.2149 3.5712 13 6 3.2590 -1.7091 1.7719 14 6 1.9493 -2.1632 2.4193 15 6 2.0795 -3.6209 2.8657 16 16 0.5269 -4.1591 3.6340 17 6 0.8719 -5.8810 4.0883 18 6 -0.3432 -6.4793 4.7490 19 6 -1.3027 -7.1160 3.9844 20 6 -2.4171 -7.6653 4.5905 21 6 -2.5716 -7.5784 5.9614 22 6 -1.6147 -6.9371 6.7255 23 6 -0.4982 -6.3916 6.1198 24 1 -1.0500 0.0002 0.0002 25 1 3.0089 0.9844 -0.2980 26 1 3.0097 -0.7489 -0.7028 27 1 1.6860 3.1067 1.0213 28 1 4.0709 -1.7971 2.4939 29 1 3.4729 -2.3360 0.9063 30 1 1.1374 -2.0751 1.6974 31 1 1.7354 -1.5363 3.2849 32 1 2.8913 -3.7086 3.5877 33 1 2.2937 -4.2480 2.0003 34 1 1.7143 -5.9127 4.7793 35 1 1.1156 -6.4515 3.1920 36 1 -1.1818 -7.1843 2.9133 37 1 -3.1665 -8.1631 3.9931 38 1 -3.4420 -8.0079 6.4350 39 1 -1.7376 -6.8652 7.7961 40 1 0.2517 -5.8944 6.7174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281323524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:19 Heat of formation + Delta-G solvation = 81.145547 kcal Electronic energy + Delta-G solvation = -19172.269989 eV Core-core repulsion = 16272.697113 eV Total energy + Delta-G solvation = -2899.572876 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.08460 -38.27104 -34.88161 -33.77719 -33.43915 -32.26431 -31.79690 -28.31109 -27.97523 -27.33601 -24.05781 -23.48747 -22.42997 -21.82758 -19.35385 -18.30068 -17.81758 -17.16024 -16.75486 -16.42215 -16.08813 -16.06847 -15.61951 -15.30450 -15.11730 -14.66889 -14.32936 -14.15962 -13.80879 -13.58577 -13.41159 -13.35034 -12.90176 -12.74385 -12.65648 -12.55629 -12.18346 -12.04932 -11.92092 -11.88310 -11.54468 -10.95963 -10.74585 -10.68267 -10.29173 -9.83762 -9.60943 -8.93622 -8.67488 -7.82771 -5.23436 0.05961 0.49396 1.03968 1.47090 1.50353 1.59536 1.72477 2.34277 2.53606 2.61430 2.94139 3.29544 3.67806 3.73676 3.84142 4.00802 4.09703 4.14633 4.25728 4.27256 4.28550 4.50982 4.56755 4.58078 4.63612 4.73163 4.77137 4.88058 4.95543 5.06840 5.14682 5.24824 5.32333 5.47262 5.54413 5.60717 5.63407 5.66658 5.69738 6.08960 6.30499 7.11237 7.36690 7.84632 8.26314 9.19116 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024553 B = 0.002893 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.103960 B = 9675.626233 C = 9985.829736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.123 4.123 3 C 0.267 3.733 4 N -0.600 5.600 5 C -0.267 4.267 6 H 0.076 0.924 7 C -0.049 4.049 8 N -0.914 5.914 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.290 1.290 12 H -0.302 1.302 13 C 0.153 3.847 14 C -0.107 4.107 15 C -0.061 4.061 16 S -0.314 6.314 17 C -0.033 4.033 18 C -0.088 4.088 19 C -0.116 4.116 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.117 4.117 24 H 0.215 0.785 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.245 0.755 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.129 0.871 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.844 -21.286 5.977 22.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 C -0.126 4.126 3 C 0.141 3.859 4 N -0.320 5.320 5 C -0.396 4.396 6 H 0.094 0.906 7 C -0.245 4.245 8 N -0.559 5.559 9 Si 0.789 3.211 10 H -0.191 1.191 11 H -0.217 1.217 12 H -0.229 1.229 13 C 0.025 3.975 14 C -0.149 4.149 15 C -0.210 4.210 16 S -0.084 6.084 17 C -0.180 4.180 18 C -0.089 4.089 19 C -0.136 4.136 20 C -0.146 4.146 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.137 4.137 24 H 0.232 0.768 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.147 0.853 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.715 -20.529 6.074 21.921 hybrid contribution 0.796 0.778 0.246 1.140 sum -3.919 -19.751 6.320 21.104 Atomic orbital electron populations 1.24902 0.96339 1.06713 1.04184 1.24690 0.96094 0.95067 0.96747 1.17820 0.82681 0.99430 0.85926 1.44434 1.74510 1.01837 1.11177 1.19529 1.25423 0.87669 1.07018 0.90607 1.25576 0.97289 1.00365 1.01238 1.70306 1.22863 1.19553 1.43218 0.85325 0.78387 0.80000 0.77378 1.19144 1.21699 1.22941 1.21072 0.94285 0.84187 0.97913 1.21806 1.00860 0.92542 0.99681 1.23319 0.95620 0.99268 1.02796 1.87616 1.26149 1.15524 1.79123 1.22269 0.98985 0.92875 1.03844 1.19397 0.96097 0.99229 0.94166 1.21276 0.94150 0.97801 1.00339 1.21454 0.97778 0.99836 0.95544 1.21542 0.99624 0.98783 0.94147 1.21452 0.94010 0.98037 1.01185 1.21277 0.98955 0.99380 0.94079 0.76830 0.91238 0.91413 0.94505 0.92219 0.91382 0.93905 0.94897 0.89011 0.88586 0.88261 0.88085 0.85270 0.83913 0.83683 0.84016 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -14.14 19.25 74.32 1.43 -12.71 16 2 C -0.12 -6.08 10.54 31.13 0.33 -5.75 16 3 C 0.27 12.66 5.45 84.57 0.46 13.12 16 4 N -0.60 -28.85 2.50 -712.54 -1.78 -30.64 16 5 C -0.27 -14.22 9.66 84.03 0.81 -13.41 16 6 H 0.08 3.95 7.90 -2.91 -0.02 3.93 16 7 C -0.05 -2.67 4.85 84.86 0.41 -2.26 16 8 N -0.91 -53.12 9.50 21.65 0.21 -52.91 16 9 Si 0.96 44.74 29.61 68.60 2.03 46.77 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 13 C 0.15 5.82 5.70 86.38 0.49 6.31 16 14 C -0.11 -4.08 5.40 30.59 0.17 -3.92 16 15 C -0.06 -1.74 5.94 71.98 0.43 -1.31 16 16 S -0.31 -9.35 21.72 -56.49 -1.23 -10.58 16 17 C -0.03 -0.69 6.07 71.23 0.43 -0.26 16 18 C -0.09 -1.88 5.14 -19.87 -0.10 -1.98 16 19 C -0.12 -2.30 9.70 22.27 0.22 -2.08 16 20 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 21 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 22 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 23 C -0.12 -2.36 9.70 22.27 0.22 -2.15 16 24 H 0.21 8.41 7.80 -4.42 -0.03 8.38 16 25 H 0.07 3.66 6.42 -2.38 -0.02 3.65 16 26 H 0.07 2.71 7.98 -2.39 -0.02 2.70 16 27 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.06 2.14 8.03 -2.38 -0.02 2.12 16 29 H 0.07 2.22 7.95 -2.39 -0.02 2.20 16 30 H 0.04 1.83 7.20 -2.39 -0.02 1.81 16 31 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.10 1.83 8.09 -2.39 -0.02 1.81 16 35 H 0.10 1.82 8.08 -2.39 -0.02 1.80 16 36 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -65.84 354.66 6.18 -59.67 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.99 Total: 19.71 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 5.96 Total: -32.02 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -1.58 Total: -83.55 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -9.35 SS G_CDS: -1.23 Total: -10.58 kcal Total: -65.84 6.18 -59.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281323524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.812 kcal (2) G-P(sol) polarization free energy of solvation -65.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds