Wall clock time and date at job start Tue Mar 31 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47366 * 187.40181 * 3 2 1 5 5 C 1.37095 * 120.00134 * 82.11394 * 4 3 2 6 6 H 1.08000 * 120.00451 * 164.15973 * 5 4 3 7 7 C 1.38956 * 119.99669 * 344.15925 * 5 4 3 8 8 N 1.31405 * 120.00365 * 0.67083 * 7 5 4 9 9 Si 1.86803 * 119.99862 * 180.67315 * 7 5 4 10 10 H 1.48503 * 109.47337 * 89.99870 * 9 7 5 11 11 H 1.48501 * 109.47307 * 210.00348 * 9 7 5 12 12 H 1.48509 * 109.46918 * 329.99797 * 9 7 5 13 13 C 1.34773 * 120.00162 * 262.11442 * 4 3 2 14 14 O 1.21297 * 120.00071 * 183.68646 * 13 4 3 15 15 C 1.50704 * 119.99999 * 3.69059 * 13 4 3 16 16 C 1.53005 * 109.47158 * 175.32078 * 15 13 4 17 17 C 1.52996 * 109.47008 * 55.32147 * 15 13 4 18 18 C 1.50693 * 109.46976 * 295.32112 * 15 13 4 19 19 C 1.38274 * 119.99060 * 351.89698 * 18 15 13 20 20 C 1.38217 * 120.05708 * 179.97438 * 19 18 15 21 21 C 1.38224 * 120.02371 * 0.05013 * 20 19 18 22 22 C 1.38440 * 119.97398 * 359.97320 * 21 20 19 23 23 F 1.35100 * 120.02629 * 180.02562 * 22 21 20 24 24 C 1.38174 * 119.98960 * 171.94653 * 18 15 13 25 25 H 4.40638 * 5.51411 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.47248 * 67.39922 * 3 2 1 27 27 H 1.09008 * 109.47183 * 307.40203 * 3 2 1 28 28 H 0.97001 * 120.00316 * 180.02562 * 8 7 5 29 29 H 1.08990 * 109.46694 * 184.71929 * 16 15 13 30 30 H 1.09004 * 109.46986 * 304.71808 * 16 15 13 31 31 H 1.09002 * 109.46981 * 64.71774 * 16 15 13 32 32 H 1.09002 * 109.46888 * 278.53928 * 17 15 13 33 33 H 1.09000 * 109.47666 * 38.53415 * 17 15 13 34 34 H 1.08999 * 109.47383 * 158.54093 * 17 15 13 35 35 H 1.08000 * 119.97189 * 0.05035 * 19 18 15 36 36 H 1.07995 * 119.99314 * 180.02562 * 20 19 18 37 37 H 1.07999 * 120.01311 * 179.97438 * 21 20 19 38 38 H 1.07997 * 120.01272 * 0.24966 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3705 0.1779 5 6 3.2085 1.9138 1.4344 6 1 3.7940 2.8054 1.6033 7 6 2.5308 1.3171 2.4907 8 7 1.8291 0.2248 2.2879 9 14 2.6173 2.0680 4.1990 10 1 1.5115 3.0449 4.3669 11 1 2.4895 0.9956 5.2182 12 1 3.9199 2.7605 4.3699 13 6 3.5091 2.0967 -0.8936 14 8 3.9755 3.2060 -0.7412 15 6 3.3491 1.5306 -2.2811 16 6 3.7374 2.5917 -3.3127 17 6 1.8922 1.1172 -2.4983 18 6 4.2417 0.3267 -2.4383 19 6 5.1576 0.0117 -1.4515 20 6 5.9766 -1.0925 -1.5940 21 6 5.8817 -1.8827 -2.7242 22 6 4.9655 -1.5680 -3.7132 23 9 4.8715 -2.3399 -4.8180 24 6 4.1455 -0.4614 -3.5691 25 1 -1.0502 -0.0003 -0.0002 26 1 3.0096 -0.3941 -0.9488 27 1 3.0097 -0.6234 0.8164 28 1 1.3558 -0.1915 3.0252 29 1 3.5424 2.2118 -4.3155 30 1 3.1490 3.4939 -3.1451 31 1 4.7973 2.8253 -3.2123 32 1 1.7227 0.1364 -2.0538 33 1 1.2332 1.8475 -2.0287 34 1 1.6825 1.0729 -3.5670 35 1 5.2322 0.6283 -0.5679 36 1 6.6913 -1.3378 -0.8224 37 1 6.5220 -2.7452 -2.8356 38 1 3.4335 -0.2125 -4.3421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281534314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:41 Heat of formation + Delta-G solvation = 29.702415 kcal Electronic energy + Delta-G solvation = -23832.116362 eV Core-core repulsion = 20364.099568 eV Total energy + Delta-G solvation = -3468.016794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.75404 -40.44583 -37.98905 -35.44417 -34.63308 -31.81322 -31.38280 -30.32796 -29.62692 -26.94687 -26.20836 -25.15612 -23.42437 -22.31775 -21.14804 -18.70469 -17.89050 -17.39976 -16.59758 -16.00443 -15.94696 -15.60848 -15.43955 -14.71470 -14.38642 -14.28235 -13.65015 -13.58008 -13.34932 -13.08496 -12.73232 -12.39395 -12.02841 -11.89825 -11.74278 -11.66543 -11.46684 -11.27749 -11.13643 -11.10816 -10.61195 -10.46955 -10.34765 -10.33738 -9.51197 -9.12201 -8.78556 -8.69795 -8.45053 -8.29456 -7.91761 -6.26357 -3.92925 1.34244 1.38602 3.12181 3.22189 3.26152 3.64212 3.76633 3.89659 4.13412 4.27247 4.39907 4.72593 4.81640 5.03282 5.08578 5.21752 5.33668 5.46886 5.52603 5.54253 5.63858 5.78276 5.99355 6.02880 6.14979 6.15884 6.21808 6.28088 6.31035 6.45458 6.55239 6.62641 6.70551 6.77907 6.95969 7.07960 7.18096 7.50258 7.98195 8.38537 8.98901 9.07893 9.30820 9.83242 10.63871 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019121 B = 0.005964 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.031098 B = 4693.818446 C = 4804.248354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.076 4.076 3 C 0.225 3.775 4 N -0.438 5.438 5 C -0.308 4.308 6 H 0.105 0.895 7 C 0.030 3.970 8 N -0.872 5.872 9 Si 0.930 3.070 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.460 3.540 14 O -0.580 6.580 15 C -0.041 4.041 16 C -0.115 4.115 17 C -0.146 4.146 18 C -0.032 4.032 19 C -0.119 4.119 20 C -0.088 4.088 21 C -0.161 4.161 22 C 0.092 3.908 23 F -0.145 7.145 24 C -0.149 4.149 25 H 0.193 0.807 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.269 0.731 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 -5.233 -8.576 10.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.079 4.079 3 C 0.102 3.898 4 N -0.156 5.156 5 C -0.436 4.436 6 H 0.123 0.877 7 C -0.173 4.173 8 N -0.511 5.511 9 Si 0.757 3.243 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.248 3.752 14 O -0.464 6.464 15 C -0.044 4.044 16 C -0.173 4.173 17 C -0.203 4.203 18 C -0.033 4.033 19 C -0.137 4.137 20 C -0.106 4.106 21 C -0.180 4.180 22 C 0.073 3.927 23 F -0.124 7.124 24 C -0.167 4.167 25 H 0.211 0.789 26 H 0.085 0.915 27 H 0.130 0.870 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.374 -4.837 -8.355 10.227 hybrid contribution -0.534 0.007 0.859 1.012 sum 2.839 -4.831 -7.496 9.359 Atomic orbital electron populations 1.24100 0.95245 1.02164 1.09767 1.22792 0.94012 0.98248 0.92801 1.18873 0.84623 0.85591 1.00677 1.43717 1.55122 1.11050 1.05712 1.19754 1.29095 1.11714 0.83001 0.87749 1.25332 0.95298 0.96294 1.00342 1.69864 1.30812 1.18682 1.31741 0.85855 0.78874 0.78464 0.81083 1.20451 1.20923 1.19461 1.19686 0.84633 0.85978 0.84918 1.90531 1.49516 1.20572 1.85734 1.19796 0.95357 0.93179 0.96109 1.21588 1.02394 0.97625 0.95676 1.22271 0.93436 1.03284 1.01302 1.19586 0.95614 0.95015 0.93060 1.21605 0.94832 0.97663 0.99613 1.20994 0.98694 0.94201 0.96698 1.21077 1.00232 1.02107 0.94601 1.17610 0.98901 0.91687 0.84529 1.91467 1.95588 1.74101 1.51248 1.20887 1.01094 0.95192 0.99568 0.78938 0.91454 0.87021 0.91952 0.92843 0.91591 0.92122 0.90483 0.91630 0.92590 0.84061 0.84985 0.85159 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.16 19.13 29.55 0.57 -5.59 16 2 C -0.08 -1.69 7.73 -37.12 -0.29 -1.98 16 3 C 0.22 4.91 3.75 -6.83 -0.03 4.88 16 4 N -0.44 -10.51 1.91 -117.93 -0.23 -10.73 16 5 C -0.31 -8.13 9.43 -14.93 -0.14 -8.27 16 6 H 0.10 2.90 7.25 -52.49 -0.38 2.52 16 7 C 0.03 0.75 5.35 -17.47 -0.09 0.66 16 8 N -0.87 -21.97 7.85 55.50 0.44 -21.53 16 9 Si 0.93 20.34 29.55 -169.99 -5.02 15.31 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.46 10.60 4.78 -10.99 -0.05 10.54 16 14 O -0.58 -15.27 15.61 5.54 0.09 -15.19 16 15 C -0.04 -0.74 0.59 -156.81 -0.09 -0.83 16 16 C -0.12 -1.89 7.56 37.16 0.28 -1.61 16 17 C -0.15 -2.48 6.58 37.16 0.24 -2.24 16 18 C -0.03 -0.53 3.00 -104.64 -0.31 -0.84 16 19 C -0.12 -1.99 7.28 -39.58 -0.29 -2.28 16 20 C -0.09 -1.22 10.04 -39.59 -0.40 -1.61 16 21 C -0.16 -2.10 10.03 -39.51 -0.40 -2.49 16 22 C 0.09 1.29 7.30 -39.42 -0.29 1.00 16 23 F -0.15 -2.02 17.27 2.25 0.04 -1.99 16 24 C -0.15 -2.15 8.92 -39.51 -0.35 -2.51 16 25 H 0.19 3.39 7.80 -54.08 -0.42 2.97 16 26 H 0.07 1.31 3.10 -51.93 -0.16 1.15 16 27 H 0.11 2.62 6.58 -51.92 -0.34 2.28 16 28 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.05 0.71 7.93 -51.93 -0.41 0.30 16 30 H 0.07 1.13 8.03 -51.93 -0.42 0.71 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.36 4.25 -51.93 -0.22 1.14 16 33 H 0.06 1.24 7.84 -51.93 -0.41 0.83 16 34 H 0.06 0.78 7.62 -51.93 -0.40 0.38 16 35 H 0.14 2.74 5.96 -52.49 -0.31 2.42 16 36 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.13 1.71 7.63 -52.49 -0.40 1.31 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -28.75 311.57 -5.90 -34.65 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.27 Total: 7.96 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -1.64 Total: -13.18 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.21 Total: -32.27 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.09 Total: -15.19 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.75 -5.90 -34.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281534314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.355 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds