Wall clock time and date at job start Tue Mar 31 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47366 * 187.40181 * 3 2 1 5 5 C 1.37095 * 120.00134 * 82.11394 * 4 3 2 6 6 H 1.08000 * 120.00451 * 164.15973 * 5 4 3 7 7 C 1.38956 * 119.99669 * 344.15925 * 5 4 3 8 8 N 1.31405 * 120.00365 * 0.67083 * 7 5 4 9 9 Si 1.86803 * 119.99862 * 180.67315 * 7 5 4 10 10 H 1.48503 * 109.47337 * 89.99870 * 9 7 5 11 11 H 1.48501 * 109.47307 * 210.00348 * 9 7 5 12 12 H 1.48509 * 109.46918 * 329.99797 * 9 7 5 13 13 C 1.34773 * 120.00162 * 262.11442 * 4 3 2 14 14 O 1.21297 * 120.00071 * 183.68646 * 13 4 3 15 15 C 1.50704 * 119.99999 * 3.69059 * 13 4 3 16 16 C 1.53005 * 109.47158 * 175.32078 * 15 13 4 17 17 C 1.52996 * 109.47008 * 55.32147 * 15 13 4 18 18 C 1.50693 * 109.46976 * 295.32112 * 15 13 4 19 19 C 1.38274 * 119.99060 * 351.89698 * 18 15 13 20 20 C 1.38217 * 120.05708 * 179.97438 * 19 18 15 21 21 C 1.38224 * 120.02371 * 0.05013 * 20 19 18 22 22 C 1.38440 * 119.97398 * 359.97320 * 21 20 19 23 23 F 1.35100 * 120.02629 * 180.02562 * 22 21 20 24 24 C 1.38174 * 119.98960 * 171.94653 * 18 15 13 25 25 H 4.40638 * 5.51411 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.47248 * 67.39922 * 3 2 1 27 27 H 1.09008 * 109.47183 * 307.40203 * 3 2 1 28 28 H 0.97001 * 120.00316 * 180.02562 * 8 7 5 29 29 H 1.08990 * 109.46694 * 184.71929 * 16 15 13 30 30 H 1.09004 * 109.46986 * 304.71808 * 16 15 13 31 31 H 1.09002 * 109.46981 * 64.71774 * 16 15 13 32 32 H 1.09002 * 109.46888 * 278.53928 * 17 15 13 33 33 H 1.09000 * 109.47666 * 38.53415 * 17 15 13 34 34 H 1.08999 * 109.47383 * 158.54093 * 17 15 13 35 35 H 1.08000 * 119.97189 * 0.05035 * 19 18 15 36 36 H 1.07995 * 119.99314 * 180.02562 * 20 19 18 37 37 H 1.07999 * 120.01311 * 179.97438 * 21 20 19 38 38 H 1.07997 * 120.01272 * 0.24966 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3705 0.1779 5 6 3.2085 1.9138 1.4344 6 1 3.7940 2.8054 1.6033 7 6 2.5308 1.3171 2.4907 8 7 1.8291 0.2248 2.2879 9 14 2.6173 2.0680 4.1990 10 1 1.5115 3.0449 4.3669 11 1 2.4895 0.9956 5.2182 12 1 3.9199 2.7605 4.3699 13 6 3.5091 2.0967 -0.8936 14 8 3.9755 3.2060 -0.7412 15 6 3.3491 1.5306 -2.2811 16 6 3.7374 2.5917 -3.3127 17 6 1.8922 1.1172 -2.4983 18 6 4.2417 0.3267 -2.4383 19 6 5.1576 0.0117 -1.4515 20 6 5.9766 -1.0925 -1.5940 21 6 5.8817 -1.8827 -2.7242 22 6 4.9655 -1.5680 -3.7132 23 9 4.8715 -2.3399 -4.8180 24 6 4.1455 -0.4614 -3.5691 25 1 -1.0502 -0.0003 -0.0002 26 1 3.0096 -0.3941 -0.9488 27 1 3.0097 -0.6234 0.8164 28 1 1.3558 -0.1915 3.0252 29 1 3.5424 2.2118 -4.3155 30 1 3.1490 3.4939 -3.1451 31 1 4.7973 2.8253 -3.2123 32 1 1.7227 0.1364 -2.0538 33 1 1.2332 1.8475 -2.0287 34 1 1.6825 1.0729 -3.5670 35 1 5.2322 0.6283 -0.5679 36 1 6.6913 -1.3378 -0.8224 37 1 6.5220 -2.7452 -2.8356 38 1 3.4335 -0.2125 -4.3421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281534314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:40 Heat of formation + Delta-G solvation = 15.544080 kcal Electronic energy + Delta-G solvation = -23832.730313 eV Core-core repulsion = 20364.099568 eV Total energy + Delta-G solvation = -3468.630745 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.83702 -41.94845 -39.43513 -37.28448 -36.10818 -33.65516 -33.15004 -31.50929 -30.83876 -28.52840 -27.78622 -26.92887 -24.80178 -23.52036 -22.61322 -20.23911 -19.69951 -18.78359 -18.31978 -17.36663 -17.20845 -17.03866 -16.53889 -16.38044 -16.02919 -15.84015 -15.19950 -14.95279 -14.75450 -14.55520 -14.06520 -14.02028 -13.72462 -13.23844 -13.09134 -12.98866 -12.93745 -12.86006 -12.77188 -12.51861 -12.42837 -12.14350 -11.93925 -11.62594 -11.35055 -10.86226 -10.46739 -10.25199 -9.90493 -9.81369 -9.54263 -8.19239 -5.93720 0.17601 0.25834 1.34673 1.40053 1.50849 1.89336 2.14535 2.35468 2.54834 2.61768 3.06589 3.10913 3.27508 3.62042 3.73366 3.96690 4.07392 4.12806 4.14071 4.22355 4.27159 4.45542 4.64555 4.75344 4.81422 4.86925 4.88774 5.02910 5.08794 5.13843 5.15849 5.25337 5.35254 5.38594 5.45014 5.53561 5.57368 5.94102 6.05385 6.46333 7.14131 7.29080 7.43559 7.97070 8.66903 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019121 B = 0.005964 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.031098 B = 4693.818446 C = 4804.248354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.111 4.111 3 C 0.236 3.764 4 N -0.445 5.445 5 C -0.343 4.343 6 H 0.077 0.923 7 C 0.001 3.999 8 N -0.876 5.876 9 Si 0.986 3.014 10 H -0.281 1.281 11 H -0.270 1.270 12 H -0.273 1.273 13 C 0.453 3.547 14 O -0.626 6.626 15 C -0.034 4.034 16 C -0.112 4.112 17 C -0.139 4.139 18 C -0.045 4.045 19 C -0.142 4.142 20 C -0.084 4.084 21 C -0.149 4.149 22 C 0.092 3.908 23 F -0.141 7.141 24 C -0.142 4.142 25 H 0.224 0.776 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.270 0.730 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 -7.145 -10.032 12.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.113 4.113 3 C 0.114 3.886 4 N -0.162 5.162 5 C -0.470 4.470 6 H 0.094 0.906 7 C -0.200 4.200 8 N -0.514 5.514 9 Si 0.811 3.189 10 H -0.207 1.207 11 H -0.194 1.194 12 H -0.198 1.198 13 C 0.243 3.757 14 O -0.513 6.513 15 C -0.037 4.037 16 C -0.169 4.169 17 C -0.196 4.196 18 C -0.046 4.046 19 C -0.160 4.160 20 C -0.101 4.101 21 C -0.167 4.167 22 C 0.073 3.927 23 F -0.120 7.120 24 C -0.160 4.160 25 H 0.241 0.759 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.170 0.830 37 H 0.180 0.820 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.955 -6.786 -9.822 12.298 hybrid contribution -0.382 0.567 1.288 1.458 sum 2.573 -6.219 -8.534 10.868 Atomic orbital electron populations 1.24889 0.96158 1.00715 1.08317 1.23067 0.94601 0.99567 0.94067 1.18761 0.84786 0.84076 1.00989 1.43811 1.55194 1.11920 1.05303 1.19650 1.30489 1.11884 0.85023 0.90553 1.25944 0.94675 0.96563 1.02860 1.70011 1.30276 1.18663 1.32405 0.85028 0.78366 0.77904 0.77600 1.20731 1.19449 1.19756 1.20617 0.82929 0.85427 0.86752 1.90481 1.51267 1.22701 1.86855 1.19716 0.96777 0.94393 0.92861 1.21601 1.01331 0.96788 0.97211 1.22214 0.91870 1.01940 1.03577 1.19379 0.95937 0.95063 0.94223 1.21439 0.96754 0.98875 0.98971 1.21174 0.98219 0.93073 0.97676 1.21380 0.99715 1.02289 0.93346 1.17685 0.98811 0.91477 0.84746 1.91487 1.95545 1.73890 1.51042 1.20969 1.01371 0.94737 0.98967 0.75905 0.89059 0.89249 0.91852 0.88820 0.93016 0.93324 0.91029 0.94122 0.88627 0.87709 0.82968 0.82049 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -11.47 19.13 74.32 1.42 -10.04 16 2 C -0.11 -4.92 7.73 31.13 0.24 -4.68 16 3 C 0.24 10.51 3.75 84.58 0.32 10.83 16 4 N -0.45 -22.32 1.91 -645.41 -1.23 -23.56 16 5 C -0.34 -19.03 9.43 84.04 0.79 -18.24 16 6 H 0.08 4.56 7.25 -2.91 -0.02 4.54 16 7 C 0.00 0.07 5.35 84.93 0.45 0.53 16 8 N -0.88 -44.49 7.85 21.66 0.17 -44.32 16 9 Si 0.99 42.42 29.55 68.60 2.03 44.45 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 C 0.45 21.84 4.78 87.66 0.42 22.26 16 14 O -0.63 -35.07 15.61 -3.08 -0.05 -35.11 16 15 C -0.03 -1.23 0.59 -53.67 -0.03 -1.27 16 16 C -0.11 -3.59 7.56 71.98 0.54 -3.04 16 17 C -0.14 -4.55 6.58 71.98 0.47 -4.08 16 18 C -0.05 -1.45 3.00 -19.87 -0.06 -1.51 16 19 C -0.14 -4.78 7.28 22.27 0.16 -4.62 16 20 C -0.08 -2.18 10.04 22.26 0.22 -1.96 16 21 C -0.15 -3.37 10.03 22.31 0.22 -3.15 16 22 C 0.09 2.26 7.30 22.38 0.16 2.43 16 23 F -0.14 -3.38 17.27 44.97 0.78 -2.60 16 24 C -0.14 -3.69 8.92 22.31 0.20 -3.49 16 25 H 0.22 7.28 7.80 -4.41 -0.03 7.25 16 26 H 0.09 3.58 3.10 -2.39 -0.01 3.57 16 27 H 0.09 4.33 6.58 -2.38 -0.02 4.32 16 28 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 29 H 0.09 2.21 7.93 -2.39 -0.02 2.19 16 30 H 0.05 1.78 8.03 -2.38 -0.02 1.76 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 2.42 4.25 -2.39 -0.01 2.41 16 33 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16 34 H 0.10 2.34 7.62 -2.39 -0.02 2.32 16 35 H 0.10 4.33 5.96 -2.91 -0.02 4.31 16 36 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.16 3.31 7.63 -2.91 -0.02 3.29 16 Total: -1.00 -64.90 311.57 8.32 -56.58 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 1.08 Total: 24.60 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 5.54 Total: -20.04 kcal Atomic # 7 Polarization: -66.82 SS G_CDS: -1.06 Total: -67.88 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -0.05 Total: -35.11 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -64.90 8.32 -56.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281534314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.128 kcal (2) G-P(sol) polarization free energy of solvation -64.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds