Wall clock time and date at job start Tue Mar 31 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47173 * 281.70745 * 3 2 1 5 5 C 1.37101 * 120.00143 * 263.81692 * 4 3 2 6 6 H 1.07994 * 120.00462 * 142.47580 * 5 4 3 7 7 C 1.38959 * 119.99561 * 322.48030 * 5 4 3 8 8 N 1.31410 * 119.99770 * 157.62590 * 7 5 4 9 9 Si 1.86794 * 120.00046 * 337.62606 * 7 5 4 10 10 H 1.48495 * 109.47569 * 95.70673 * 9 7 5 11 11 H 1.48504 * 109.47192 * 215.70764 * 9 7 5 12 12 H 1.48501 * 109.47267 * 335.70337 * 9 7 5 13 13 C 1.34772 * 120.00290 * 83.81498 * 4 3 2 14 14 O 1.21291 * 120.00461 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99711 * 0.27579 * 13 4 3 16 16 C 1.52999 * 109.46999 * 179.72456 * 15 13 4 17 17 H 1.08998 * 109.47365 * 304.99978 * 16 15 13 18 18 C 1.52996 * 109.47427 * 65.00118 * 16 15 13 19 19 C 1.50702 * 109.46978 * 185.00083 * 16 15 13 20 20 C 1.38224 * 120.01297 * 299.72355 * 19 16 15 21 21 C 1.38222 * 120.02449 * 179.72262 * 20 19 16 22 22 C 1.38265 * 120.04868 * 0.55582 * 21 20 19 23 23 C 1.38172 * 120.03043 * 359.71889 * 22 21 20 24 24 C 1.38443 * 120.01372 * 120.00224 * 19 16 15 25 25 F 1.35096 * 120.02223 * 0.02562 * 24 19 16 26 26 H 4.40645 * 5.51434 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46949 * 161.70716 * 3 2 1 28 28 H 1.08996 * 109.47099 * 41.70910 * 3 2 1 29 29 H 0.96998 * 120.00035 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47234 * 299.71853 * 15 13 4 31 31 H 1.08994 * 109.47426 * 59.72631 * 15 13 4 32 32 H 1.09007 * 109.47241 * 59.99683 * 18 16 15 33 33 H 1.08998 * 109.47672 * 180.02562 * 18 16 15 34 34 H 1.09000 * 109.47175 * 300.00139 * 18 16 15 35 35 H 1.08002 * 119.98337 * 359.97438 * 20 19 16 36 36 H 1.07994 * 119.97304 * 180.27529 * 21 20 19 37 37 H 1.08005 * 119.98217 * 179.74630 * 22 21 20 38 38 H 1.08000 * 120.01248 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2794 1.3525 5 6 3.4831 0.7541 2.1831 6 1 3.2631 0.6962 3.2388 7 6 4.1194 1.8762 1.6665 8 7 4.0661 3.0183 2.3144 9 14 5.0504 1.7613 0.0512 10 1 4.1706 2.2044 -1.0599 11 1 6.2516 2.6325 0.1091 12 1 5.4693 0.3554 -0.1797 13 6 3.2411 -1.5530 1.7802 14 8 3.6460 -1.7849 2.8998 15 6 2.8638 -2.6893 0.8650 16 6 3.0829 -4.0201 1.5873 17 1 4.1108 -4.0739 1.9460 18 6 2.1227 -4.1204 2.7742 19 6 2.8234 -5.1578 0.6337 20 6 1.5784 -5.3010 0.0506 21 6 1.3418 -6.3411 -0.8284 22 6 2.3466 -7.2460 -1.1167 23 6 3.5903 -7.1083 -0.5308 24 6 3.8302 -6.0634 0.3458 25 9 5.0457 -5.9280 0.9198 26 1 -1.0500 0.0002 0.0001 27 1 3.0088 0.9766 -0.3226 28 1 3.0096 -0.7663 -0.6837 29 1 4.5100 3.8017 1.9536 30 1 1.8146 -2.5967 0.5844 31 1 3.4838 -2.6556 -0.0307 32 1 1.0947 -4.0666 2.4156 33 1 2.2791 -5.0684 3.2891 34 1 2.3103 -3.2975 3.4639 35 1 0.7914 -4.5975 0.2790 36 1 0.3701 -6.4495 -1.2869 37 1 2.1594 -8.0607 -1.8007 38 1 4.3751 -7.8151 -0.7565 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281569111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:03 Heat of formation + Delta-G solvation = 7.414477 kcal Electronic energy + Delta-G solvation = -22686.711776 eV Core-core repulsion = 19217.728505 eV Total energy + Delta-G solvation = -3468.983271 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.85026 -39.62908 -38.72175 -35.76209 -34.60001 -32.67978 -31.61817 -30.62278 -29.79578 -27.79894 -26.74291 -24.71758 -23.61918 -22.56148 -20.41429 -18.79878 -18.42676 -17.71415 -16.78092 -16.53259 -16.22847 -15.65933 -15.55641 -15.40852 -14.84358 -14.21048 -13.91613 -13.72236 -13.47724 -13.15835 -13.05321 -12.85940 -12.68151 -12.50421 -12.20399 -12.01030 -11.82138 -11.42952 -11.01879 -10.87769 -10.82612 -10.64219 -10.46782 -10.25582 -9.79185 -9.58914 -9.13132 -9.03182 -8.70005 -8.49272 -7.88678 -6.42928 -4.00587 1.09162 1.12358 2.97290 3.13487 3.16147 3.21635 3.31834 3.50426 3.68796 4.10798 4.22511 4.40436 4.63804 4.71589 4.80607 4.88603 5.05053 5.12725 5.23466 5.29724 5.40655 5.51563 5.63827 5.80989 5.90475 5.92010 5.94613 5.99086 6.01455 6.13839 6.20136 6.28298 6.31686 6.36808 6.61888 6.74912 6.84919 7.49122 8.05456 8.24874 8.44652 8.91891 9.26218 9.70317 10.69196 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.004774 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.699510 B = 5863.097777 C = 6187.985322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.174 4.174 3 C 0.191 3.809 4 N -0.464 5.464 5 C -0.317 4.317 6 H 0.106 0.894 7 C 0.062 3.938 8 N -0.860 5.860 9 Si 0.864 3.136 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.260 1.260 13 C 0.474 3.526 14 O -0.552 6.552 15 C -0.131 4.131 16 C -0.037 4.037 17 H 0.091 0.909 18 C -0.144 4.144 19 C -0.101 4.101 20 C -0.087 4.087 21 C -0.130 4.130 22 C -0.102 4.102 23 C -0.155 4.155 24 C 0.099 3.901 25 F -0.136 7.136 26 H 0.213 0.787 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.274 0.726 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 -16.551 -9.972 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.175 4.175 3 C 0.068 3.932 4 N -0.186 5.186 5 C -0.444 4.444 6 H 0.124 0.876 7 C -0.144 4.144 8 N -0.495 5.495 9 Si 0.691 3.309 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.184 1.184 13 C 0.263 3.737 14 O -0.433 6.433 15 C -0.171 4.171 16 C -0.056 4.056 17 H 0.109 0.891 18 C -0.201 4.201 19 C -0.102 4.102 20 C -0.105 4.105 21 C -0.148 4.148 22 C -0.120 4.120 23 C -0.174 4.174 24 C 0.080 3.920 25 F -0.115 7.115 26 H 0.230 0.770 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.438 -16.438 -9.323 19.664 hybrid contribution 0.496 0.252 -0.950 1.101 sum -4.942 -16.186 -10.274 19.798 Atomic orbital electron populations 1.24718 0.95643 1.02418 1.00960 1.23780 0.94877 0.99154 0.99737 1.18923 0.84009 1.02553 0.87700 1.43701 1.57167 1.05520 1.12174 1.19031 1.37786 0.94020 0.93549 0.87599 1.25344 0.96245 0.94807 0.98037 1.69759 1.40195 0.99437 1.40150 0.87138 0.80709 0.79479 0.83590 1.20022 1.20858 1.18390 1.20182 0.81479 0.83272 0.88738 1.90531 1.48470 1.83354 1.20942 1.21737 1.02755 0.93522 0.99076 1.19832 1.02507 0.89783 0.93494 0.89076 1.21927 0.97401 1.02931 0.97865 1.20160 0.93353 0.97107 0.99551 1.20976 0.95948 0.97848 0.95699 1.21187 0.99537 0.95279 0.98805 1.20948 0.92364 0.99269 0.99417 1.21112 0.98950 0.98487 0.98846 1.17627 0.80979 0.96995 0.96422 1.91499 1.41501 1.95492 1.82977 0.76994 0.88570 0.89660 0.91517 0.89807 0.90098 0.93382 0.93326 0.89353 0.84995 0.85524 0.85371 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.55 19.25 29.55 0.57 -2.98 16 2 C -0.17 -3.30 12.93 -37.12 -0.48 -3.78 16 3 C 0.19 3.90 4.27 -6.83 -0.03 3.87 16 4 N -0.46 -11.21 2.15 -117.93 -0.25 -11.47 16 5 C -0.32 -8.96 9.36 -14.93 -0.14 -9.10 16 6 H 0.11 3.37 7.91 -52.49 -0.42 2.95 16 7 C 0.06 1.70 5.26 -17.46 -0.09 1.61 16 8 N -0.86 -24.80 13.96 55.50 0.77 -24.02 16 9 Si 0.86 20.02 25.04 -169.99 -4.26 15.77 16 10 H -0.27 -5.87 6.69 56.52 0.38 -5.49 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 13 C 0.47 10.85 7.28 -10.99 -0.08 10.77 16 14 O -0.55 -14.39 13.84 5.55 0.08 -14.31 16 15 C -0.13 -2.26 3.53 -27.88 -0.10 -2.36 16 16 C -0.04 -0.61 2.19 -91.77 -0.20 -0.81 16 17 H 0.09 1.67 6.94 -51.93 -0.36 1.31 16 18 C -0.14 -2.29 8.74 37.16 0.32 -1.96 16 19 C -0.10 -1.38 4.79 -104.55 -0.50 -1.88 16 20 C -0.09 -0.99 8.76 -39.59 -0.35 -1.33 16 21 C -0.13 -1.22 10.04 -39.58 -0.40 -1.62 16 22 C -0.10 -0.93 10.04 -39.60 -0.40 -1.32 16 23 C -0.16 -1.67 10.03 -39.52 -0.40 -2.06 16 24 C 0.10 1.34 7.25 -39.42 -0.29 1.05 16 25 F -0.14 -2.07 16.19 2.25 0.04 -2.03 16 26 H 0.21 2.50 7.80 -54.09 -0.42 2.08 16 27 H 0.10 2.07 3.61 -51.93 -0.19 1.88 16 28 H 0.09 1.45 6.69 -51.93 -0.35 1.10 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.08 1.31 6.94 -51.93 -0.36 0.95 16 31 H 0.08 1.30 7.41 -51.93 -0.38 0.91 16 32 H 0.05 0.67 7.37 -51.93 -0.38 0.28 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.68 5.95 -51.93 -0.31 1.37 16 35 H 0.13 1.37 7.16 -52.49 -0.38 1.00 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 324.23 15.07 4.89 4.89 Total: -1.00 -31.90 324.23 -5.68 -37.58 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.40 Total: 5.50 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -2.55 Total: -11.90 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.52 Total: -35.49 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.08 Total: -14.31 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.26 Total: 15.77 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.90 -5.68 -37.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281569111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.999 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds