Wall clock time and date at job start Tue Mar 31 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47173 * 281.70745 * 3 2 1 5 5 C 1.37101 * 120.00143 * 263.81692 * 4 3 2 6 6 H 1.07994 * 120.00462 * 142.47580 * 5 4 3 7 7 C 1.38959 * 119.99561 * 322.48030 * 5 4 3 8 8 N 1.31410 * 119.99770 * 157.62590 * 7 5 4 9 9 Si 1.86794 * 120.00046 * 337.62606 * 7 5 4 10 10 H 1.48495 * 109.47569 * 95.70673 * 9 7 5 11 11 H 1.48504 * 109.47192 * 215.70764 * 9 7 5 12 12 H 1.48501 * 109.47267 * 335.70337 * 9 7 5 13 13 C 1.34772 * 120.00290 * 83.81498 * 4 3 2 14 14 O 1.21291 * 120.00461 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99711 * 0.27579 * 13 4 3 16 16 C 1.52999 * 109.46999 * 179.72456 * 15 13 4 17 17 H 1.08998 * 109.47365 * 304.99978 * 16 15 13 18 18 C 1.52996 * 109.47427 * 65.00118 * 16 15 13 19 19 C 1.50702 * 109.46978 * 185.00083 * 16 15 13 20 20 C 1.38224 * 120.01297 * 299.72355 * 19 16 15 21 21 C 1.38222 * 120.02449 * 179.72262 * 20 19 16 22 22 C 1.38265 * 120.04868 * 0.55582 * 21 20 19 23 23 C 1.38172 * 120.03043 * 359.71889 * 22 21 20 24 24 C 1.38443 * 120.01372 * 120.00224 * 19 16 15 25 25 F 1.35096 * 120.02223 * 0.02562 * 24 19 16 26 26 H 4.40645 * 5.51434 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46949 * 161.70716 * 3 2 1 28 28 H 1.08996 * 109.47099 * 41.70910 * 3 2 1 29 29 H 0.96998 * 120.00035 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47234 * 299.71853 * 15 13 4 31 31 H 1.08994 * 109.47426 * 59.72631 * 15 13 4 32 32 H 1.09007 * 109.47241 * 59.99683 * 18 16 15 33 33 H 1.08998 * 109.47672 * 180.02562 * 18 16 15 34 34 H 1.09000 * 109.47175 * 300.00139 * 18 16 15 35 35 H 1.08002 * 119.98337 * 359.97438 * 20 19 16 36 36 H 1.07994 * 119.97304 * 180.27529 * 21 20 19 37 37 H 1.08005 * 119.98217 * 179.74630 * 22 21 20 38 38 H 1.08000 * 120.01248 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2794 1.3525 5 6 3.4831 0.7541 2.1831 6 1 3.2631 0.6962 3.2388 7 6 4.1194 1.8762 1.6665 8 7 4.0661 3.0183 2.3144 9 14 5.0504 1.7613 0.0512 10 1 4.1706 2.2044 -1.0599 11 1 6.2516 2.6325 0.1091 12 1 5.4693 0.3554 -0.1797 13 6 3.2411 -1.5530 1.7802 14 8 3.6460 -1.7849 2.8998 15 6 2.8638 -2.6893 0.8650 16 6 3.0829 -4.0201 1.5873 17 1 4.1108 -4.0739 1.9460 18 6 2.1227 -4.1204 2.7742 19 6 2.8234 -5.1578 0.6337 20 6 1.5784 -5.3010 0.0506 21 6 1.3418 -6.3411 -0.8284 22 6 2.3466 -7.2460 -1.1167 23 6 3.5903 -7.1083 -0.5308 24 6 3.8302 -6.0634 0.3458 25 9 5.0457 -5.9280 0.9198 26 1 -1.0500 0.0002 0.0001 27 1 3.0088 0.9766 -0.3226 28 1 3.0096 -0.7663 -0.6837 29 1 4.5100 3.8017 1.9536 30 1 1.8146 -2.5967 0.5844 31 1 3.4838 -2.6556 -0.0307 32 1 1.0947 -4.0666 2.4156 33 1 2.2791 -5.0684 3.2891 34 1 2.3103 -3.2975 3.4639 35 1 0.7914 -4.5975 0.2790 36 1 0.3701 -6.4495 -1.2869 37 1 2.1594 -8.0607 -1.8007 38 1 4.3751 -7.8151 -0.7565 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281569111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:02 Heat of formation + Delta-G solvation = -11.513603 kcal Electronic energy + Delta-G solvation = -22687.532560 eV Core-core repulsion = 19217.728505 eV Total energy + Delta-G solvation = -3469.804054 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.88539 -41.06543 -39.94059 -37.41234 -35.96983 -34.53705 -33.30915 -31.43490 -30.85587 -29.28516 -28.34192 -26.50087 -24.71721 -23.45964 -21.69406 -20.34990 -20.12874 -18.76801 -18.43220 -17.85878 -17.56537 -17.26962 -16.60599 -16.45710 -16.34578 -15.59803 -15.14170 -15.06118 -14.91922 -14.65804 -14.48930 -14.31096 -14.03772 -13.93932 -13.60101 -13.13740 -12.95893 -12.78580 -12.66750 -12.50157 -12.18194 -12.05357 -11.80312 -11.64599 -11.36523 -11.15211 -10.99439 -10.37308 -9.87996 -9.84226 -9.56005 -8.54798 -6.18136 0.24475 0.31838 1.15030 1.28485 1.40722 1.68813 1.91159 1.94608 2.14617 2.68187 2.84634 2.90434 3.36641 3.58432 3.58908 3.71834 3.97738 4.05699 4.10638 4.21422 4.25199 4.35454 4.42385 4.46162 4.51535 4.63685 4.76525 4.93487 5.04565 5.10763 5.14024 5.17069 5.28625 5.41379 5.49001 5.52027 5.55357 6.00545 6.02228 6.48667 6.73577 6.89469 7.22763 7.80503 8.62611 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.004774 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.699510 B = 5863.097777 C = 6187.985322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.236 4.236 3 C 0.190 3.810 4 N -0.476 5.476 5 C -0.335 4.335 6 H 0.044 0.956 7 C 0.015 3.985 8 N -0.907 5.907 9 Si 0.935 3.065 10 H -0.237 1.237 11 H -0.283 1.283 12 H -0.252 1.252 13 C 0.466 3.534 14 O -0.598 6.598 15 C -0.114 4.114 16 C -0.032 4.032 17 H 0.057 0.943 18 C -0.138 4.138 19 C -0.117 4.117 20 C -0.091 4.091 21 C -0.120 4.120 22 C -0.091 4.091 23 C -0.155 4.155 24 C 0.067 3.933 25 F -0.157 7.157 26 H 0.257 0.743 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.281 0.719 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.143 0.857 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.940 -18.846 -14.251 24.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.237 4.237 3 C 0.069 3.931 4 N -0.198 5.198 5 C -0.463 4.463 6 H 0.062 0.938 7 C -0.188 4.188 8 N -0.545 5.545 9 Si 0.757 3.243 10 H -0.162 1.162 11 H -0.209 1.209 12 H -0.176 1.176 13 C 0.257 3.743 14 O -0.482 6.482 15 C -0.154 4.154 16 C -0.051 4.051 17 H 0.075 0.925 18 C -0.195 4.195 19 C -0.118 4.118 20 C -0.109 4.109 21 C -0.138 4.138 22 C -0.109 4.109 23 C -0.174 4.174 24 C 0.048 3.952 25 F -0.136 7.136 26 H 0.273 0.727 27 H 0.101 0.899 28 H 0.139 0.861 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.182 0.818 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.608 -18.737 -13.628 24.387 hybrid contribution 1.019 0.893 0.460 1.430 sum -6.589 -17.845 -13.168 23.136 Atomic orbital electron populations 1.25712 0.96451 0.99275 0.97575 1.23718 0.95186 1.02095 1.02729 1.18958 0.85568 1.03040 0.85582 1.43809 1.57742 1.04901 1.13306 1.18614 1.39622 0.96059 0.92025 0.93824 1.26128 0.96298 0.93687 1.02677 1.69872 1.41326 1.00416 1.42853 0.86022 0.79128 0.79825 0.79299 1.16219 1.20903 1.17582 1.21233 0.80059 0.84223 0.88834 1.90509 1.50144 1.84210 1.23318 1.21685 1.04348 0.91291 0.98080 1.19642 1.00566 0.90684 0.94251 0.92494 1.21830 0.98749 1.01648 0.97313 1.19912 0.94849 0.96668 1.00352 1.21156 0.94932 0.98913 0.95896 1.21593 1.00984 0.93846 0.97329 1.21418 0.91156 0.99674 0.98648 1.21397 1.00428 0.97683 0.97894 1.18028 0.80456 0.98638 0.98071 1.91443 1.42784 1.95769 1.83623 0.72713 0.89851 0.86150 0.90951 0.87276 0.88271 0.91037 0.92437 0.93417 0.83920 0.82152 0.81766 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.94 19.25 74.32 1.43 -3.51 16 2 C -0.24 -8.43 12.93 31.13 0.40 -8.03 16 3 C 0.19 7.51 4.27 84.57 0.36 7.87 16 4 N -0.48 -23.61 2.15 -645.42 -1.39 -25.00 16 5 C -0.34 -20.15 9.36 84.04 0.79 -19.36 16 6 H 0.04 3.07 7.91 -2.91 -0.02 3.05 16 7 C 0.01 0.83 5.26 84.93 0.45 1.28 16 8 N -0.91 -54.73 13.96 21.67 0.30 -54.43 16 9 Si 0.94 41.61 25.04 68.60 1.72 43.33 16 10 H -0.24 -9.19 6.69 99.48 0.67 -8.53 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.25 -10.81 7.11 99.48 0.71 -10.11 16 13 C 0.47 22.10 7.28 87.66 0.64 22.74 16 14 O -0.60 -33.58 13.84 -3.06 -0.04 -33.62 16 15 C -0.11 -3.88 3.53 29.85 0.11 -3.77 16 16 C -0.03 -1.06 2.19 -11.54 -0.03 -1.09 16 17 H 0.06 2.23 6.94 -2.39 -0.02 2.21 16 18 C -0.14 -4.48 8.74 71.98 0.63 -3.85 16 19 C -0.12 -3.03 4.79 -19.82 -0.09 -3.12 16 20 C -0.09 -1.75 8.76 22.26 0.20 -1.55 16 21 C -0.12 -1.64 10.04 22.27 0.22 -1.41 16 22 C -0.09 -1.21 10.04 22.26 0.22 -0.99 16 23 C -0.16 -2.89 10.03 22.31 0.22 -2.66 16 24 C 0.07 1.75 7.25 22.38 0.16 1.91 16 25 F -0.16 -4.93 16.19 44.97 0.73 -4.20 16 26 H 0.26 4.60 7.80 -4.42 -0.03 4.57 16 27 H 0.08 3.45 3.61 -2.39 -0.01 3.44 16 28 H 0.12 3.76 6.69 -2.39 -0.02 3.74 16 29 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.11 3.15 6.94 -2.39 -0.02 3.14 16 31 H 0.10 3.01 7.41 -2.39 -0.02 2.99 16 32 H 0.07 1.92 7.37 -2.38 -0.02 1.90 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 1.93 5.95 -2.39 -0.01 1.92 16 35 H 0.14 2.37 7.16 -2.91 -0.02 2.35 16 36 H 0.16 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -78.02 324.23 8.06 -69.96 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 1.03 Total: 19.53 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 5.71 Total: -15.56 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -1.09 Total: -79.43 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.04 Total: -33.62 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.73 Total: -4.20 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.72 Total: 43.33 kcal Total: -78.02 8.06 -69.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281569111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.448 kcal (2) G-P(sol) polarization free energy of solvation -78.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds