Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17411 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46926 * 98.36211 * 3 2 1 5 5 C 1.37092 * 120.00483 * 270.56140 * 4 3 2 6 6 H 1.08001 * 119.99992 * 141.25688 * 5 4 3 7 7 C 1.38957 * 120.00017 * 321.26853 * 5 4 3 8 8 N 1.31404 * 119.99978 * 160.71015 * 7 5 4 9 9 Si 1.86798 * 119.99838 * 340.70848 * 7 5 4 10 10 H 1.48497 * 109.47103 * 95.46618 * 9 7 5 11 11 H 1.48500 * 109.47227 * 215.46880 * 9 7 5 12 12 H 1.48497 * 109.47093 * 335.46880 * 9 7 5 13 13 C 1.34778 * 119.99742 * 90.57181 * 4 3 2 14 14 O 1.21289 * 120.00124 * 183.62232 * 13 4 3 15 15 C 1.50702 * 120.00037 * 3.61695 * 13 4 3 16 16 H 1.08987 * 109.47159 * 26.74309 * 15 13 4 17 17 C 1.53006 * 109.46890 * 266.74241 * 15 13 4 18 18 C 1.53001 * 109.47033 * 146.74550 * 15 13 4 19 19 C 1.50701 * 109.46914 * 184.99794 * 18 15 13 20 20 C 1.38270 * 119.98744 * 90.00190 * 19 18 15 21 21 C 1.38220 * 120.05399 * 180.02562 * 20 19 18 22 22 C 1.38226 * 120.02366 * 0.02562 * 21 20 19 23 23 C 1.38436 * 119.97536 * 359.97318 * 22 21 20 24 24 F 1.35095 * 120.02739 * 179.72263 * 23 22 21 25 25 C 1.38179 * 119.98779 * 270.01740 * 19 18 15 26 26 H 4.40635 * 5.51377 * 180.02562 * 4 1 2 27 27 H 1.09004 * 109.47003 * 338.36082 * 3 2 1 28 28 H 1.09005 * 109.46683 * 218.36648 * 3 2 1 29 29 H 0.97002 * 120.00101 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47213 * 294.34980 * 17 15 13 31 31 H 1.08994 * 109.47063 * 54.35803 * 17 15 13 32 32 H 1.09005 * 109.46815 * 174.35340 * 17 15 13 33 33 H 1.09005 * 109.47048 * 64.99820 * 18 15 13 34 34 H 1.08997 * 109.47216 * 304.99939 * 18 15 13 35 35 H 1.08001 * 119.97265 * 0.04173 * 20 19 18 36 36 H 1.08001 * 119.98779 * 179.97438 * 21 20 19 37 37 H 1.07996 * 120.00988 * 180.02562 * 22 21 20 38 38 H 1.07996 * 120.01142 * 0.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1343 0.2017 -1.3665 5 6 3.3523 -0.8781 -2.1825 6 1 3.1000 -0.8222 -3.2311 7 6 3.8976 -2.0447 -1.6603 8 7 3.7639 -3.1799 -2.3084 9 14 4.8207 -1.9990 -0.0370 10 1 3.8989 -2.3680 1.0672 11 1 5.9497 -2.9626 -0.0823 12 1 5.3474 -0.6300 0.1946 13 6 3.3693 1.4484 -1.8215 14 8 3.7103 1.6196 -2.9728 15 6 3.2082 2.6298 -0.8997 16 1 3.3714 2.3121 0.1300 17 6 1.7943 3.1974 -1.0404 18 6 4.2295 3.7076 -1.2689 19 6 4.1517 4.8356 -0.2725 20 6 4.9371 4.8081 0.8652 21 6 4.8664 5.8416 1.7802 22 6 4.0100 6.9038 1.5591 23 6 3.2232 6.9325 0.4204 24 9 2.3817 7.9673 0.2059 25 6 3.2954 5.8967 -0.4960 26 1 -1.0500 0.0002 0.0001 27 1 3.0098 -0.9545 0.3790 28 1 3.0090 0.8066 0.6379 29 1 4.1443 -3.9943 -1.9437 30 1 1.6651 3.6064 -2.0425 31 1 1.0660 2.4035 -0.8753 32 1 1.6447 3.9867 -0.3037 33 1 4.0113 4.0884 -2.2666 34 1 5.2315 3.2788 -1.2548 35 1 5.6064 3.9785 1.0389 36 1 5.4800 5.8189 2.6687 37 1 3.9553 7.7114 2.2740 38 1 2.6816 5.9176 -1.3844 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281583801.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = -10.023962 kcal Electronic energy + Delta-G solvation = -22552.637935 eV Core-core repulsion = 19082.898476 eV Total energy + Delta-G solvation = -3469.739459 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.85897 -41.18739 -39.97172 -37.29869 -35.89024 -34.46335 -33.32817 -31.87820 -31.44284 -28.49406 -27.82092 -27.27805 -24.28778 -23.59120 -22.18586 -20.36580 -20.01325 -18.59348 -18.34305 -17.83521 -17.55352 -17.21777 -17.04860 -16.57381 -16.16767 -15.81819 -15.28876 -14.97062 -14.79216 -14.63718 -14.54347 -14.26356 -14.10980 -13.71927 -13.51944 -13.12734 -13.04424 -12.84132 -12.62626 -12.58221 -12.20349 -11.99364 -11.98080 -11.79635 -11.34811 -11.13661 -10.93763 -10.33837 -9.90025 -9.84808 -9.58208 -8.52010 -6.20430 0.22128 0.29262 1.17824 1.30056 1.42350 1.65968 1.91373 1.94041 2.16687 2.62140 2.83555 2.91752 3.29265 3.57122 3.63749 3.78091 3.93458 3.99707 4.07882 4.12339 4.23872 4.27503 4.33912 4.46182 4.61274 4.70128 4.80406 4.84781 4.97782 5.08990 5.14316 5.17834 5.21286 5.25026 5.42413 5.50337 5.63259 5.99311 6.01045 6.48713 6.72697 6.88650 7.22300 7.78535 8.65209 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021718 B = 0.004440 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.915729 B = 6304.306949 C = 6552.923804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.229 4.229 3 C 0.188 3.812 4 N -0.473 5.473 5 C -0.336 4.336 6 H 0.040 0.960 7 C 0.011 3.989 8 N -0.913 5.913 9 Si 0.941 3.059 10 H -0.242 1.242 11 H -0.284 1.284 12 H -0.239 1.239 13 C 0.473 3.527 14 O -0.606 6.606 15 C -0.093 4.093 16 H 0.108 0.892 17 C -0.135 4.135 18 C -0.059 4.059 19 C -0.050 4.050 20 C -0.129 4.129 21 C -0.081 4.081 22 C -0.158 4.158 23 C 0.080 3.920 24 F -0.151 7.151 25 C -0.156 4.156 26 H 0.253 0.747 27 H 0.081 0.919 28 H 0.130 0.870 29 H 0.280 0.720 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.144 0.856 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.293 17.138 15.375 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.230 4.230 3 C 0.067 3.933 4 N -0.194 5.194 5 C -0.464 4.464 6 H 0.058 0.942 7 C -0.191 4.191 8 N -0.550 5.550 9 Si 0.763 3.237 10 H -0.167 1.167 11 H -0.211 1.211 12 H -0.162 1.162 13 C 0.264 3.736 14 O -0.490 6.490 15 C -0.114 4.114 16 H 0.126 0.874 17 C -0.192 4.192 18 C -0.097 4.097 19 C -0.051 4.051 20 C -0.147 4.147 21 C -0.099 4.099 22 C -0.176 4.176 23 C 0.061 3.939 24 F -0.130 7.130 25 C -0.175 4.175 26 H 0.269 0.731 27 H 0.098 0.902 28 H 0.148 0.852 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.162 0.838 36 H 0.182 0.818 37 H 0.171 0.829 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.100 17.045 14.744 22.537 hybrid contribution -0.127 -0.626 -0.503 0.813 sum -0.227 16.419 14.241 21.735 Atomic orbital electron populations 1.25676 0.96548 0.99745 0.97898 1.23750 0.95320 1.01585 1.02377 1.19053 0.85310 1.03438 0.85519 1.43776 1.58044 1.05246 1.12381 1.18604 1.43173 0.91608 0.93018 0.94171 1.26209 0.96151 0.93665 1.03033 1.69855 1.42921 0.99467 1.42755 0.85935 0.78976 0.80217 0.78614 1.16731 1.21056 1.16222 1.21283 0.78628 0.84744 0.88946 1.90527 1.51445 1.85647 1.21345 1.21270 0.98385 0.92368 0.99390 0.87410 1.21760 0.93531 1.01386 1.02550 1.20361 0.99003 0.92534 0.97805 1.19588 0.95540 0.94184 0.95751 1.21443 0.99644 1.00147 0.93493 1.21334 0.97073 0.91813 0.99678 1.21427 0.97702 1.01595 0.96895 1.17897 0.92928 0.85980 0.97118 1.91468 1.69550 1.56854 1.95080 1.21115 1.01677 0.94126 1.00603 0.73116 0.90183 0.85222 0.90990 0.93077 0.92696 0.89378 0.91109 0.90592 0.83840 0.81836 0.82856 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.54 19.03 74.32 1.41 -4.13 16 2 C -0.23 -8.40 12.30 31.12 0.38 -8.01 16 3 C 0.19 7.25 4.56 84.57 0.39 7.64 16 4 N -0.47 -22.93 2.13 -645.42 -1.37 -24.30 16 5 C -0.34 -19.95 9.38 84.04 0.79 -19.16 16 6 H 0.04 2.82 7.90 -2.91 -0.02 2.80 16 7 C 0.01 0.64 5.35 84.93 0.45 1.10 16 8 N -0.91 -54.74 13.96 21.66 0.30 -54.44 16 9 Si 0.94 40.18 24.87 68.60 1.71 41.89 16 10 H -0.24 -9.15 6.72 99.48 0.67 -8.48 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 12 H -0.24 -9.32 7.11 99.48 0.71 -8.62 16 13 C 0.47 21.75 6.64 87.66 0.58 22.33 16 14 O -0.61 -33.54 16.21 -3.06 -0.05 -33.59 16 15 C -0.09 -2.97 2.16 -11.54 -0.02 -2.99 16 16 H 0.11 2.89 5.77 -2.39 -0.01 2.88 16 17 C -0.13 -3.88 8.56 71.98 0.62 -3.26 16 18 C -0.06 -1.69 4.39 29.85 0.13 -1.56 16 19 C -0.05 -1.13 4.72 -19.87 -0.09 -1.23 16 20 C -0.13 -2.32 9.70 22.27 0.22 -2.11 16 21 C -0.08 -1.15 10.04 22.26 0.22 -0.93 16 22 C -0.16 -2.54 10.03 22.31 0.22 -2.31 16 23 C 0.08 1.67 7.30 22.38 0.16 1.84 16 24 F -0.15 -3.44 17.27 44.97 0.78 -2.67 16 25 C -0.16 -3.50 8.09 22.31 0.18 -3.32 16 26 H 0.25 5.18 7.80 -4.42 -0.03 5.15 16 27 H 0.08 3.20 3.17 -2.38 -0.01 3.19 16 28 H 0.13 3.81 5.67 -2.38 -0.01 3.80 16 29 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.67 6.44 -2.39 -0.02 1.66 16 32 H 0.09 2.04 6.65 -2.38 -0.02 2.03 16 33 H 0.07 2.23 7.96 -2.38 -0.02 2.21 16 34 H 0.08 2.21 8.09 -2.39 -0.02 2.19 16 35 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 38 H 0.13 2.94 8.04 -2.91 -0.02 2.92 16 Total: -1.00 -75.68 325.72 8.04 -67.64 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 1.04 Total: 21.59 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 5.64 Total: -16.11 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -1.07 Total: -78.74 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.05 Total: -33.59 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.71 Total: 41.89 kcal Total: -75.68 8.04 -67.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281583801.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.616 kcal (2) G-P(sol) polarization free energy of solvation -75.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds