Wall clock time and date at job start Tue Mar 31 2020 05:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32474 * 125.18599 * 2 1 4 4 C 1.32936 * 109.67849 * 179.97438 * 3 2 1 5 5 C 1.40661 * 132.77825 * 179.97438 * 4 3 2 6 6 C 1.36105 * 119.37463 * 179.97438 * 5 4 3 7 7 C 1.40739 * 119.57913 * 0.02562 * 6 5 4 8 8 N 1.40270 * 119.96295 * 179.97438 * 7 6 5 9 9 C 1.34770 * 119.99805 * 326.97611 * 8 7 6 10 10 O 1.21596 * 120.00239 * 354.69064 * 9 8 7 11 11 N 1.34781 * 120.00064 * 174.69117 * 9 8 7 12 12 C 1.46499 * 120.00350 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.46949 * 34.99390 * 12 11 9 14 14 C 1.52995 * 109.46975 * 275.00339 * 12 11 9 15 15 C 1.50692 * 109.47413 * 154.99766 * 12 11 9 16 16 H 1.08006 * 119.99642 * 359.97438 * 15 12 11 17 17 C 1.37874 * 120.00310 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99755 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00337 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47349 * 269.99789 * 19 17 15 21 21 H 1.48510 * 109.47011 * 29.99911 * 19 17 15 22 22 H 1.48503 * 109.47435 * 149.99410 * 19 17 15 23 23 C 1.35754 * 120.07270 * 0.26360 * 7 6 5 24 24 N 1.36060 * 120.47981 * 359.45613 * 23 7 6 25 25 N 1.31297 * 125.19033 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47202 * 90.02913 * 1 2 3 27 27 H 1.09002 * 109.46970 * 210.02562 * 1 2 3 28 28 H 1.09001 * 109.47652 * 330.02157 * 1 2 3 29 29 H 1.08000 * 120.31597 * 359.97438 * 5 4 3 30 30 H 1.07998 * 120.21100 * 180.02562 * 6 5 4 31 31 H 0.96994 * 119.99756 * 146.97578 * 8 7 6 32 32 H 0.97001 * 119.99412 * 359.97438 * 11 9 8 33 33 H 1.08996 * 109.47660 * 59.99663 * 14 12 11 34 34 H 1.08999 * 109.47437 * 180.02562 * 14 12 11 35 35 H 1.09000 * 109.46870 * 299.99532 * 14 12 11 36 36 H 0.97003 * 119.99880 * 179.97438 * 18 17 15 37 37 H 1.07999 * 119.75929 * 179.72926 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2703 1.0827 0.0000 4 6 3.5513 0.7273 0.0006 5 6 4.7479 1.4667 0.0003 6 6 5.9393 0.8087 0.0016 7 6 5.9557 -0.5986 0.0026 8 7 7.1790 -1.2849 0.0034 9 6 8.2456 -0.7616 -0.6328 10 8 8.1241 0.2555 -1.2879 11 7 9.4471 -1.3657 -0.5430 12 6 10.6065 -0.7972 -1.2349 13 1 10.5386 0.2907 -1.2242 14 6 10.6297 -1.2923 -2.6824 15 6 11.8699 -1.2287 -0.5361 16 1 11.8148 -1.8626 0.3366 17 6 13.0962 -0.8133 -1.0101 18 7 13.1633 -0.0409 -2.0724 19 14 14.6624 -1.3475 -0.1434 20 1 15.0104 -0.3559 0.9059 21 1 14.4526 -2.6777 0.4827 22 1 15.7693 -1.4337 -1.1296 23 6 4.7889 -1.2925 -0.0032 24 7 3.5964 -0.6375 0.0012 25 7 2.2636 -1.0730 0.0005 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5135 29 1 4.7215 2.5464 -0.0008 30 1 6.8662 1.3630 0.0019 31 1 7.2572 -2.1361 0.4618 32 1 9.5441 -2.1770 -0.0201 33 1 9.7159 -0.9802 -3.1879 34 1 11.4925 -0.8697 -3.1972 35 1 10.6976 -2.3801 -2.6932 36 1 14.0260 0.2516 -2.4057 37 1 4.8074 -2.3723 -0.0068 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289594130.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:57 Heat of formation + Delta-G solvation = 92.842302 kcal Electronic energy + Delta-G solvation = -21858.733488 eV Core-core repulsion = 18445.667358 eV Total energy + Delta-G solvation = -3413.066130 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.71417 -40.18134 -37.93659 -35.22728 -34.39678 -33.62344 -32.56939 -31.41356 -29.82433 -29.06247 -27.56935 -25.34960 -24.02664 -23.26866 -21.70766 -20.87139 -20.11780 -18.72217 -18.07164 -17.24303 -16.72049 -16.34601 -15.94608 -15.31515 -14.96788 -14.64841 -14.36679 -13.86270 -13.66414 -13.48795 -13.32335 -13.12098 -12.52332 -12.51080 -12.21292 -11.78598 -11.48016 -11.24895 -11.17156 -11.07821 -10.87678 -10.42533 -10.32656 -10.23586 -10.14819 -9.72601 -9.16736 -8.95318 -8.66295 -8.22694 -7.89810 -6.21799 -4.31668 0.58256 0.88542 1.86839 2.53882 2.97720 3.18816 3.24766 3.26300 3.27563 3.66838 3.82386 4.01950 4.23228 4.45514 4.68356 4.72054 4.97628 5.10756 5.12341 5.30421 5.33445 5.53407 5.77148 5.81381 6.05672 6.22056 6.33815 6.45762 6.63911 6.74043 6.85393 6.91817 7.05812 7.27521 7.50995 7.67678 7.83696 7.91839 8.04187 8.54967 8.69046 8.99796 9.36198 10.84172 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.052008 B = 0.002804 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.247365 B = 9985.097169 C =10095.069201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.248 3.752 3 N -0.548 5.548 4 C 0.272 3.728 5 C -0.096 4.096 6 C -0.049 4.049 7 C 0.166 3.834 8 N -0.687 5.687 9 C 0.694 3.306 10 O -0.578 6.578 11 N -0.713 5.713 12 C 0.280 3.720 13 H 0.052 0.948 14 C -0.150 4.150 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.274 1.274 22 H -0.285 1.285 23 C 0.050 3.950 24 N -0.267 5.267 25 N -0.347 5.347 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.161 0.839 30 H 0.168 0.832 31 H 0.408 0.592 32 H 0.389 0.611 33 H 0.016 0.984 34 H 0.092 0.908 35 H 0.027 0.973 36 H 0.266 0.734 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.910 -2.556 5.649 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.032 4.032 3 N -0.280 5.280 4 C 0.018 3.982 5 C -0.117 4.117 6 C -0.076 4.076 7 C 0.065 3.935 8 N -0.336 5.336 9 C 0.395 3.605 10 O -0.455 6.455 11 N -0.364 5.364 12 C 0.179 3.821 13 H 0.069 0.931 14 C -0.208 4.208 15 C -0.575 4.575 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.199 1.199 22 H -0.210 1.210 23 C -0.082 4.082 24 N -0.040 5.040 25 N -0.180 5.180 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.179 0.821 30 H 0.185 0.815 31 H 0.244 0.756 32 H 0.221 0.779 33 H 0.035 0.965 34 H 0.110 0.890 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.272 -1.915 4.891 18.053 hybrid contribution 1.318 -1.231 0.822 1.982 sum -15.954 -3.146 5.713 17.235 Atomic orbital electron populations 1.20136 0.83498 1.04156 1.03944 1.24396 0.98370 0.85591 0.94846 1.70766 0.98174 1.29258 1.29756 1.21788 0.94485 0.82561 0.99326 1.20222 0.86820 1.01152 1.03553 1.21549 0.99741 0.92662 0.93604 1.16680 0.84478 0.91403 1.00958 1.42727 1.07692 1.25465 1.57739 1.16111 0.80495 0.83962 0.79968 1.90911 1.83821 1.25568 1.45239 1.45917 1.07477 1.29400 1.53559 1.18750 0.79692 0.95095 0.88599 0.93062 1.22119 1.00780 0.98897 0.99035 1.21172 0.90216 1.32830 1.13265 0.91998 1.24878 0.99169 0.94684 0.94918 1.69896 1.25558 1.33922 1.22511 0.86419 0.82296 0.78964 0.79237 1.20503 1.19857 1.21023 1.20664 0.80536 0.99085 1.07950 1.47170 1.05558 1.06940 1.44359 1.78476 0.83270 1.21147 1.35150 0.89576 0.89862 0.89321 0.82100 0.81469 0.75623 0.77902 0.96517 0.88967 0.95423 0.92431 0.81239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 36.00 0.38 -0.11 16 2 C 0.25 3.36 8.09 -157.03 -1.27 2.09 16 3 N -0.55 -8.28 11.25 -10.15 -0.11 -8.39 16 4 C 0.27 3.99 7.88 -156.32 -1.23 2.76 16 5 C -0.10 -1.22 10.10 -39.43 -0.40 -1.61 16 6 C -0.05 -0.65 8.65 -39.40 -0.34 -0.99 16 7 C 0.17 2.13 6.24 -83.94 -0.52 1.61 16 8 N -0.69 -8.64 5.35 -14.41 -0.08 -8.72 16 9 C 0.69 12.22 8.28 -86.92 -0.72 11.50 16 10 O -0.58 -12.33 13.68 5.28 0.07 -12.26 16 11 N -0.71 -13.18 5.07 -59.82 -0.30 -13.48 16 12 C 0.28 6.62 2.56 -69.09 -0.18 6.44 16 13 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 14 C -0.15 -3.52 9.26 37.15 0.34 -3.18 16 15 C -0.54 -13.34 8.73 -34.45 -0.30 -13.65 16 16 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 17 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.88 -23.81 11.32 55.43 0.63 -23.18 16 19 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.05 0.60 11.10 -16.57 -0.18 0.42 16 24 N -0.27 -3.84 3.90 -12.18 -0.05 -3.89 16 25 N -0.35 -5.09 12.78 32.38 0.41 -4.68 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.17 2.43 6.45 -52.49 -0.34 2.09 16 31 H 0.41 3.61 8.83 -40.82 -0.36 3.25 16 32 H 0.39 5.98 8.56 -40.82 -0.35 5.63 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -32.06 321.27 -8.38 -40.45 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.26 Total: 7.64 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -4.52 Total: 6.91 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 0.50 Total: -62.33 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.06 -8.38 -40.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289594130.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.288 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds