Wall clock time and date at job start Tue Mar 31 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32474 * 125.18599 * 2 1 4 4 C 1.32936 * 109.67849 * 179.97438 * 3 2 1 5 5 C 1.40661 * 132.77825 * 179.97438 * 4 3 2 6 6 C 1.36105 * 119.37463 * 179.97438 * 5 4 3 7 7 C 1.40739 * 119.57913 * 0.02562 * 6 5 4 8 8 N 1.40270 * 119.96295 * 179.97438 * 7 6 5 9 9 C 1.34770 * 119.99805 * 326.97611 * 8 7 6 10 10 O 1.21596 * 120.00239 * 354.69064 * 9 8 7 11 11 N 1.34781 * 120.00064 * 174.69117 * 9 8 7 12 12 C 1.46499 * 120.00350 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.46949 * 34.99390 * 12 11 9 14 14 C 1.52995 * 109.46975 * 275.00339 * 12 11 9 15 15 C 1.50692 * 109.47413 * 154.99766 * 12 11 9 16 16 H 1.08006 * 119.99642 * 359.97438 * 15 12 11 17 17 C 1.37874 * 120.00310 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99755 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00337 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47349 * 269.99789 * 19 17 15 21 21 H 1.48510 * 109.47011 * 29.99911 * 19 17 15 22 22 H 1.48503 * 109.47435 * 149.99410 * 19 17 15 23 23 C 1.35754 * 120.07270 * 0.26360 * 7 6 5 24 24 N 1.36060 * 120.47981 * 359.45613 * 23 7 6 25 25 N 1.31297 * 125.19033 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47202 * 90.02913 * 1 2 3 27 27 H 1.09002 * 109.46970 * 210.02562 * 1 2 3 28 28 H 1.09001 * 109.47652 * 330.02157 * 1 2 3 29 29 H 1.08000 * 120.31597 * 359.97438 * 5 4 3 30 30 H 1.07998 * 120.21100 * 180.02562 * 6 5 4 31 31 H 0.96994 * 119.99756 * 146.97578 * 8 7 6 32 32 H 0.97001 * 119.99412 * 359.97438 * 11 9 8 33 33 H 1.08996 * 109.47660 * 59.99663 * 14 12 11 34 34 H 1.08999 * 109.47437 * 180.02562 * 14 12 11 35 35 H 1.09000 * 109.46870 * 299.99532 * 14 12 11 36 36 H 0.97003 * 119.99880 * 179.97438 * 18 17 15 37 37 H 1.07999 * 119.75929 * 179.72926 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2703 1.0827 0.0000 4 6 3.5513 0.7273 0.0006 5 6 4.7479 1.4667 0.0003 6 6 5.9393 0.8087 0.0016 7 6 5.9557 -0.5986 0.0026 8 7 7.1790 -1.2849 0.0034 9 6 8.2456 -0.7616 -0.6328 10 8 8.1241 0.2555 -1.2879 11 7 9.4471 -1.3657 -0.5430 12 6 10.6065 -0.7972 -1.2349 13 1 10.5386 0.2907 -1.2242 14 6 10.6297 -1.2923 -2.6824 15 6 11.8699 -1.2287 -0.5361 16 1 11.8148 -1.8626 0.3366 17 6 13.0962 -0.8133 -1.0101 18 7 13.1633 -0.0409 -2.0724 19 14 14.6624 -1.3475 -0.1434 20 1 15.0104 -0.3559 0.9059 21 1 14.4526 -2.6777 0.4827 22 1 15.7693 -1.4337 -1.1296 23 6 4.7889 -1.2925 -0.0032 24 7 3.5964 -0.6375 0.0012 25 7 2.2636 -1.0730 0.0005 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5135 29 1 4.7215 2.5464 -0.0008 30 1 6.8662 1.3630 0.0019 31 1 7.2572 -2.1361 0.4618 32 1 9.5441 -2.1770 -0.0201 33 1 9.7159 -0.9802 -3.1879 34 1 11.4925 -0.8697 -3.1972 35 1 10.6976 -2.3801 -2.6932 36 1 14.0260 0.2516 -2.4057 37 1 4.8074 -2.3723 -0.0068 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289594130.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:56 Heat of formation + Delta-G solvation = 71.573566 kcal Electronic energy + Delta-G solvation = -21859.655770 eV Core-core repulsion = 18445.667358 eV Total energy + Delta-G solvation = -3413.988412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.76275 -41.50038 -39.13596 -36.84804 -35.71153 -34.70076 -34.30037 -32.44882 -31.06699 -30.44593 -28.66437 -27.30298 -25.09414 -24.43449 -23.14633 -21.98263 -21.64555 -20.13677 -19.19763 -18.55602 -17.88221 -17.60298 -17.34614 -16.95491 -16.30605 -15.87567 -15.79572 -15.08870 -14.84220 -14.55478 -14.40263 -14.29548 -14.07308 -13.76786 -13.25025 -13.12158 -12.95249 -12.83948 -12.70516 -12.49065 -12.30733 -12.23664 -12.11191 -11.42206 -11.26581 -11.18656 -11.07661 -10.58485 -10.08998 -9.78513 -9.02334 -8.15729 -6.32256 -0.42177 -0.20767 0.81545 1.47890 1.48060 1.50553 1.58455 1.78682 2.05914 2.40444 2.44414 2.85400 3.05112 3.15711 3.29425 3.59540 3.77653 3.92887 4.19293 4.52326 4.71544 4.76294 4.78270 4.83063 4.89974 4.96126 5.03199 5.12495 5.18623 5.34577 5.40905 5.44138 5.60622 5.64120 5.69462 5.84378 6.11379 6.17689 6.75517 6.87055 7.16871 7.35862 7.61232 8.90464 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.052008 B = 0.002804 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.247365 B = 9985.097169 C =10095.069201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.242 3.758 3 N -0.571 5.571 4 C 0.256 3.744 5 C -0.092 4.092 6 C -0.055 4.055 7 C 0.154 3.846 8 N -0.662 5.662 9 C 0.698 3.302 10 O -0.618 6.618 11 N -0.709 5.709 12 C 0.289 3.711 13 H 0.006 0.994 14 C -0.137 4.137 15 C -0.544 4.544 16 H 0.076 0.924 17 C 0.015 3.985 18 N -0.916 5.916 19 Si 0.970 3.030 20 H -0.279 1.279 21 H -0.260 1.260 22 H -0.287 1.287 23 C 0.066 3.934 24 N -0.277 5.277 25 N -0.366 5.366 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.179 0.821 30 H 0.154 0.846 31 H 0.429 0.571 32 H 0.407 0.593 33 H 0.013 0.987 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.265 0.735 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.850 -4.247 6.877 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.037 4.037 3 N -0.303 5.303 4 C 0.003 3.997 5 C -0.114 4.114 6 C -0.082 4.082 7 C 0.054 3.946 8 N -0.314 5.314 9 C 0.398 3.602 10 O -0.498 6.498 11 N -0.361 5.361 12 C 0.185 3.815 13 H 0.024 0.976 14 C -0.196 4.196 15 C -0.582 4.582 16 H 0.094 0.906 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.795 3.205 20 H -0.205 1.205 21 H -0.184 1.184 22 H -0.213 1.213 23 C -0.066 4.066 24 N -0.050 5.050 25 N -0.199 5.199 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.197 0.803 30 H 0.172 0.828 31 H 0.269 0.731 32 H 0.242 0.758 33 H 0.032 0.968 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -18.268 -3.664 6.170 19.627 hybrid contribution 1.487 -0.675 0.443 1.692 sum -16.781 -4.339 6.613 18.552 Atomic orbital electron populations 1.20374 0.80306 1.05575 1.05328 1.25321 1.00209 0.84822 0.93350 1.70784 0.98571 1.30203 1.30707 1.22086 0.94939 0.83097 0.99580 1.20371 0.86051 1.02021 1.02955 1.21481 0.99397 0.93226 0.94103 1.16657 0.84619 0.91213 1.02149 1.42213 1.06336 1.25958 1.56843 1.16107 0.81014 0.83318 0.79735 1.90896 1.84543 1.27374 1.46976 1.45436 1.06758 1.30097 1.53788 1.18279 0.81332 0.92707 0.89145 0.97612 1.21944 0.99408 0.99394 0.98835 1.21525 0.90627 1.32534 1.13524 0.90590 1.25746 1.02471 0.94740 0.95532 1.70046 1.26144 1.35223 1.24059 0.85376 0.78227 0.78995 0.77904 1.20488 1.18367 1.21306 1.21019 0.79527 1.00386 1.05657 1.47353 1.06088 1.07055 1.44476 1.78435 0.83379 1.21920 1.36212 0.88047 0.88209 0.88106 0.80347 0.82833 0.73087 0.75798 0.96796 0.91533 0.94071 0.92589 0.78105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.83 10.51 71.23 0.75 -0.08 16 2 C 0.24 6.22 8.09 138.69 1.12 7.34 16 3 N -0.57 -16.73 11.25 -186.03 -2.09 -18.82 16 4 C 0.26 7.32 7.88 134.10 1.06 8.37 16 5 C -0.09 -2.32 10.10 22.37 0.23 -2.09 16 6 C -0.05 -1.46 8.65 22.38 0.19 -1.27 16 7 C 0.15 3.75 6.24 37.83 0.24 3.98 16 8 N -0.66 -15.49 5.35 -317.76 -1.70 -17.19 16 9 C 0.70 24.15 8.28 179.05 1.48 25.63 16 10 O -0.62 -26.79 13.68 -4.02 -0.05 -26.84 16 11 N -0.71 -25.59 5.07 -461.41 -2.34 -27.93 16 12 C 0.29 13.78 2.56 44.24 0.11 13.90 16 13 H 0.01 0.34 7.58 -2.38 -0.02 0.32 16 14 C -0.14 -6.51 9.26 71.98 0.67 -5.85 16 15 C -0.54 -26.76 8.73 25.60 0.22 -26.54 16 16 H 0.08 3.44 7.74 -2.91 -0.02 3.42 16 17 C 0.02 0.79 5.30 84.65 0.45 1.23 16 18 N -0.92 -50.41 11.32 21.45 0.24 -50.17 16 19 Si 0.97 40.06 29.54 68.60 2.03 42.09 16 20 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 23 C 0.07 1.46 11.10 83.46 0.93 2.38 16 24 N -0.28 -7.56 3.90 -192.44 -0.75 -8.31 16 25 N -0.37 -10.18 12.78 -51.47 -0.66 -10.84 16 26 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.18 3.65 8.06 -2.91 -0.02 3.62 16 30 H 0.15 4.58 6.45 -2.91 -0.02 4.56 16 31 H 0.43 6.36 8.83 -92.71 -0.82 5.54 16 32 H 0.41 11.67 8.56 -92.71 -0.79 10.88 16 33 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 3.52 6.07 -2.39 -0.01 3.51 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 37 H 0.20 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -70.09 321.27 1.64 -68.46 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.48 Total: 22.54 kcal Atomic # 6 Polarization: 19.58 SS G_CDS: 7.44 Total: 27.02 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -7.30 Total: -133.27 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -70.09 1.64 -68.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289594130.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.031 kcal (2) G-P(sol) polarization free energy of solvation -70.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds