Wall clock time and date at job start Tue Mar 31 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32466 * 125.18716 * 2 1 4 4 C 1.32935 * 109.67700 * 180.02562 * 3 2 1 5 5 C 1.40668 * 132.78493 * 180.02562 * 4 3 2 6 6 C 1.36097 * 119.37943 * 180.02562 * 5 4 3 7 7 C 1.40743 * 119.58076 * 359.97372 * 6 5 4 8 8 N 1.40261 * 119.96514 * 180.02562 * 7 6 5 9 9 C 1.34770 * 120.00139 * 33.06346 * 8 7 6 10 10 O 1.21598 * 119.99973 * 5.31914 * 9 8 7 11 11 N 1.34773 * 120.00090 * 185.31095 * 9 8 7 12 12 C 1.46507 * 119.99969 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.46942 * 325.00452 * 12 11 9 14 14 C 1.53003 * 109.46980 * 85.00231 * 12 11 9 15 15 C 1.50695 * 109.46954 * 204.99867 * 12 11 9 16 16 H 1.07996 * 120.00437 * 0.02562 * 15 12 11 17 17 C 1.37883 * 119.99786 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99814 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 119.99967 * 0.02562 * 17 15 12 20 20 H 1.48496 * 109.47146 * 90.00271 * 19 17 15 21 21 H 1.48499 * 109.47180 * 210.00038 * 19 17 15 22 22 H 1.48497 * 109.47004 * 330.00163 * 19 17 15 23 23 C 1.35757 * 120.06626 * 359.97438 * 7 6 5 24 24 N 1.36053 * 120.48546 * 0.04002 * 23 7 6 25 25 N 1.31289 * 125.18507 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47037 * 269.95854 * 1 2 3 27 27 H 1.09000 * 109.47470 * 29.95410 * 1 2 3 28 28 H 1.09001 * 109.47396 * 149.95332 * 1 2 3 29 29 H 1.08005 * 120.31139 * 0.03619 * 5 4 3 30 30 H 1.07996 * 120.21055 * 180.25436 * 6 5 4 31 31 H 0.97002 * 119.99979 * 213.06293 * 8 7 6 32 32 H 0.96994 * 120.00445 * 0.02562 * 11 9 8 33 33 H 1.09000 * 109.46915 * 179.97438 * 14 12 11 34 34 H 1.09001 * 109.46868 * 299.99676 * 14 12 11 35 35 H 1.08996 * 109.47346 * 59.99608 * 14 12 11 36 36 H 0.96998 * 119.99751 * 180.02562 * 18 17 15 37 37 H 1.08005 * 119.75663 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2704 1.0826 0.0000 4 6 3.5513 0.7271 -0.0006 5 6 4.7481 1.4664 -0.0003 6 6 5.9394 0.8083 -0.0016 7 6 5.9557 -0.5990 -0.0026 8 7 7.1789 -1.2854 -0.0033 9 6 8.2454 -0.7626 0.6335 10 8 8.1237 0.2541 1.2893 11 7 9.4468 -1.3668 0.5436 12 6 10.6060 -0.7987 1.2363 13 1 10.5382 0.2890 1.2262 14 6 10.6288 -1.2948 2.6835 15 6 11.8696 -1.2300 0.5376 16 1 11.8148 -1.8633 -0.3354 17 6 13.0959 -0.8158 1.0129 18 7 14.1987 -1.1917 0.4028 19 14 13.1908 0.2792 2.5233 20 1 13.2820 -0.5649 3.7417 21 1 14.3926 1.1467 2.4311 22 1 11.9734 1.1262 2.5979 23 6 4.7888 -1.2927 -0.0017 24 7 3.5963 -0.6376 -0.0007 25 7 2.2635 -1.0730 -0.0005 26 1 -0.3633 -0.0007 1.0277 27 1 -0.3634 0.8904 -0.5131 28 1 -0.3634 -0.8896 -0.5146 29 1 4.7218 2.5461 0.0010 30 1 6.8663 1.3625 0.0027 31 1 7.2572 -2.1364 -0.4622 32 1 9.5440 -2.1776 0.0203 33 1 11.4915 -0.8726 3.1988 34 1 9.7148 -0.9829 3.1889 35 1 10.6965 -2.3826 2.6937 36 1 15.0613 -0.9007 0.7374 37 1 4.8071 -2.3726 -0.0020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289594135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:00 Heat of formation + Delta-G solvation = 101.433836 kcal Electronic energy + Delta-G solvation = -21937.025647 eV Core-core repulsion = 18524.332074 eV Total energy + Delta-G solvation = -3412.693573 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.77525 -40.32632 -38.05942 -35.44192 -34.52734 -33.68439 -32.56874 -31.53711 -30.13578 -29.59684 -27.78659 -25.28700 -24.09864 -23.37272 -21.82379 -20.93141 -20.24427 -18.88803 -18.15138 -17.32090 -16.77752 -16.43600 -16.24566 -15.59111 -15.03472 -14.64872 -14.59736 -13.92981 -13.73622 -13.51035 -13.39737 -13.17825 -13.05898 -12.56315 -12.29631 -12.26594 -11.88111 -11.54101 -11.42184 -11.30438 -10.89512 -10.37382 -10.26552 -10.20452 -10.02132 -9.62208 -9.34639 -9.03520 -8.86862 -8.42621 -8.01548 -6.29731 -4.33500 0.51643 0.82031 1.79836 2.47921 2.85962 3.15844 3.17779 3.30280 3.33271 3.52496 3.76819 3.96119 4.23455 4.33361 4.54766 4.65892 4.89603 5.04325 5.05083 5.26710 5.28085 5.49627 5.70469 5.73844 5.98070 6.16103 6.18951 6.24869 6.28449 6.37642 6.44680 6.61780 6.68637 6.85002 7.11483 7.23867 7.38882 7.86363 8.11036 8.40437 8.66472 8.81144 9.29919 10.82190 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.047772 B = 0.002990 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.979743 B = 9361.009249 C = 9563.918954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.249 3.751 3 N -0.548 5.548 4 C 0.272 3.728 5 C -0.095 4.095 6 C -0.050 4.050 7 C 0.164 3.836 8 N -0.684 5.684 9 C 0.698 3.302 10 O -0.580 6.580 11 N -0.706 5.706 12 C 0.253 3.747 13 H 0.052 0.948 14 C -0.164 4.164 15 C -0.538 4.538 16 H 0.081 0.919 17 C 0.080 3.920 18 N -0.890 5.890 19 Si 0.885 3.115 20 H -0.276 1.276 21 H -0.293 1.293 22 H -0.261 1.261 23 C 0.053 3.947 24 N -0.268 5.268 25 N -0.346 5.346 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.410 0.590 32 H 0.395 0.605 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.053 0.947 36 H 0.269 0.731 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.108 -0.168 -2.018 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.031 4.031 3 N -0.279 5.279 4 C 0.019 3.981 5 C -0.117 4.117 6 C -0.077 4.077 7 C 0.063 3.937 8 N -0.334 5.334 9 C 0.398 3.602 10 O -0.458 6.458 11 N -0.357 5.357 12 C 0.150 3.850 13 H 0.069 0.931 14 C -0.222 4.222 15 C -0.576 4.576 16 H 0.099 0.901 17 C -0.125 4.125 18 N -0.526 5.526 19 Si 0.715 3.285 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.186 1.186 23 C -0.079 4.079 24 N -0.041 5.041 25 N -0.179 5.179 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.179 0.821 30 H 0.185 0.815 31 H 0.246 0.754 32 H 0.229 0.771 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -20.417 0.375 -1.407 20.469 hybrid contribution 0.696 -0.471 0.375 0.921 sum -19.721 -0.096 -1.032 19.748 Atomic orbital electron populations 1.20145 0.83453 1.04208 1.03969 1.24405 0.98392 0.85560 0.94748 1.70768 0.98162 1.29267 1.29688 1.21794 0.94500 0.82558 0.99289 1.20220 0.86814 1.01165 1.03469 1.21535 0.99750 0.92626 0.93749 1.16651 0.84393 0.91376 1.01303 1.42625 1.07628 1.25564 1.57575 1.16043 0.80483 0.83812 0.79893 1.90909 1.83934 1.25592 1.45356 1.45499 1.06918 1.29740 1.53494 1.19086 0.82401 0.95183 0.88321 0.93057 1.22494 0.99443 1.01352 0.98937 1.20989 0.88335 1.33779 1.14522 0.90117 1.24819 0.95324 0.95388 0.96933 1.69857 0.97903 1.44573 1.40306 0.86876 0.77741 0.80919 0.82968 1.20268 1.22076 1.18552 1.20662 0.80537 0.99112 1.07624 1.47179 1.05576 1.06943 1.44388 1.78486 0.83235 1.21132 1.35075 0.89555 0.89290 0.89818 0.82083 0.81488 0.75394 0.77123 0.93266 0.94417 0.92769 0.92147 0.81163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.01 0.38 -0.09 16 2 C 0.25 3.26 8.09 -157.04 -1.27 1.99 16 3 N -0.55 -8.00 11.25 -10.15 -0.11 -8.12 16 4 C 0.27 3.84 7.88 -156.32 -1.23 2.61 16 5 C -0.09 -1.14 10.10 -39.43 -0.40 -1.54 16 6 C -0.05 -0.63 8.66 -39.41 -0.34 -0.97 16 7 C 0.16 1.98 6.24 -83.94 -0.52 1.45 16 8 N -0.68 -8.02 5.35 -14.41 -0.08 -8.10 16 9 C 0.70 11.45 8.28 -86.93 -0.72 10.73 16 10 O -0.58 -11.49 13.67 5.28 0.07 -11.42 16 11 N -0.71 -12.28 5.07 -59.81 -0.30 -12.59 16 12 C 0.25 5.57 2.15 -69.08 -0.15 5.42 16 13 H 0.05 1.24 6.64 -51.93 -0.34 0.90 16 14 C -0.16 -3.43 8.96 37.16 0.33 -3.10 16 15 C -0.54 -13.66 9.31 -34.44 -0.32 -13.98 16 16 H 0.08 2.15 7.98 -52.49 -0.42 1.73 16 17 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 18 N -0.89 -25.37 13.96 55.43 0.77 -24.60 16 19 Si 0.89 20.80 24.37 -169.99 -4.14 16.65 16 20 H -0.28 -6.30 6.87 56.52 0.39 -5.91 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.26 -6.04 6.53 56.52 0.37 -5.67 16 23 C 0.05 0.61 11.10 -16.57 -0.18 0.42 16 24 N -0.27 -3.70 3.90 -12.17 -0.05 -3.74 16 25 N -0.35 -4.91 12.78 32.38 0.41 -4.50 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.16 1.57 8.06 -52.48 -0.42 1.15 16 30 H 0.17 2.27 6.44 -52.49 -0.34 1.93 16 31 H 0.41 3.33 8.83 -40.82 -0.36 2.97 16 32 H 0.40 5.82 8.56 -40.82 -0.35 5.47 16 33 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 314.44 15.07 4.74 4.74 Total: -1.00 -33.07 314.44 -7.33 -40.40 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.12 Total: 6.30 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -4.52 Total: 4.97 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.65 Total: -61.65 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.07 Total: -11.42 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.14 Total: 16.65 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.07 -7.33 -40.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289594135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.834 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds