Wall clock time and date at job start Tue Mar 31 2020 05:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32466 * 125.18716 * 2 1 4 4 C 1.32935 * 109.67700 * 180.02562 * 3 2 1 5 5 C 1.40668 * 132.78493 * 180.02562 * 4 3 2 6 6 C 1.36097 * 119.37943 * 180.02562 * 5 4 3 7 7 C 1.40743 * 119.58076 * 359.97372 * 6 5 4 8 8 N 1.40261 * 119.96514 * 180.02562 * 7 6 5 9 9 C 1.34770 * 120.00139 * 33.06346 * 8 7 6 10 10 O 1.21598 * 119.99973 * 5.31914 * 9 8 7 11 11 N 1.34773 * 120.00090 * 185.31095 * 9 8 7 12 12 C 1.46507 * 119.99969 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.46942 * 325.00452 * 12 11 9 14 14 C 1.53003 * 109.46980 * 85.00231 * 12 11 9 15 15 C 1.50695 * 109.46954 * 204.99867 * 12 11 9 16 16 H 1.07996 * 120.00437 * 0.02562 * 15 12 11 17 17 C 1.37883 * 119.99786 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99814 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 119.99967 * 0.02562 * 17 15 12 20 20 H 1.48496 * 109.47146 * 90.00271 * 19 17 15 21 21 H 1.48499 * 109.47180 * 210.00038 * 19 17 15 22 22 H 1.48497 * 109.47004 * 330.00163 * 19 17 15 23 23 C 1.35757 * 120.06626 * 359.97438 * 7 6 5 24 24 N 1.36053 * 120.48546 * 0.04002 * 23 7 6 25 25 N 1.31289 * 125.18507 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47037 * 269.95854 * 1 2 3 27 27 H 1.09000 * 109.47470 * 29.95410 * 1 2 3 28 28 H 1.09001 * 109.47396 * 149.95332 * 1 2 3 29 29 H 1.08005 * 120.31139 * 0.03619 * 5 4 3 30 30 H 1.07996 * 120.21055 * 180.25436 * 6 5 4 31 31 H 0.97002 * 119.99979 * 213.06293 * 8 7 6 32 32 H 0.96994 * 120.00445 * 0.02562 * 11 9 8 33 33 H 1.09000 * 109.46915 * 179.97438 * 14 12 11 34 34 H 1.09001 * 109.46868 * 299.99676 * 14 12 11 35 35 H 1.08996 * 109.47346 * 59.99608 * 14 12 11 36 36 H 0.96998 * 119.99751 * 180.02562 * 18 17 15 37 37 H 1.08005 * 119.75663 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2704 1.0826 0.0000 4 6 3.5513 0.7271 -0.0006 5 6 4.7481 1.4664 -0.0003 6 6 5.9394 0.8083 -0.0016 7 6 5.9557 -0.5990 -0.0026 8 7 7.1789 -1.2854 -0.0033 9 6 8.2454 -0.7626 0.6335 10 8 8.1237 0.2541 1.2893 11 7 9.4468 -1.3668 0.5436 12 6 10.6060 -0.7987 1.2363 13 1 10.5382 0.2890 1.2262 14 6 10.6288 -1.2948 2.6835 15 6 11.8696 -1.2300 0.5376 16 1 11.8148 -1.8633 -0.3354 17 6 13.0959 -0.8158 1.0129 18 7 14.1987 -1.1917 0.4028 19 14 13.1908 0.2792 2.5233 20 1 13.2820 -0.5649 3.7417 21 1 14.3926 1.1467 2.4311 22 1 11.9734 1.1262 2.5979 23 6 4.7888 -1.2927 -0.0017 24 7 3.5963 -0.6376 -0.0007 25 7 2.2635 -1.0730 -0.0005 26 1 -0.3633 -0.0007 1.0277 27 1 -0.3634 0.8904 -0.5131 28 1 -0.3634 -0.8896 -0.5146 29 1 4.7218 2.5461 0.0010 30 1 6.8663 1.3625 0.0027 31 1 7.2572 -2.1364 -0.4622 32 1 9.5440 -2.1776 0.0203 33 1 11.4915 -0.8726 3.1988 34 1 9.7148 -0.9829 3.1889 35 1 10.6965 -2.3826 2.6937 36 1 15.0613 -0.9007 0.7374 37 1 4.8071 -2.3726 -0.0020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289594135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:59 Heat of formation + Delta-G solvation = 77.975088 kcal Electronic energy + Delta-G solvation = -21938.042895 eV Core-core repulsion = 18524.332074 eV Total energy + Delta-G solvation = -3413.710821 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.76772 -41.56072 -39.18529 -36.97788 -35.73874 -34.70251 -34.37510 -32.60041 -31.53694 -30.63697 -28.74946 -27.18879 -25.10427 -24.48357 -23.17590 -21.98533 -21.67722 -20.23867 -19.20517 -18.67585 -17.98547 -17.76313 -17.39480 -17.13686 -16.27277 -16.01821 -15.79230 -15.11757 -14.96767 -14.78626 -14.52510 -14.34228 -14.08835 -14.07016 -13.74704 -13.26399 -13.24564 -12.98287 -12.74041 -12.48843 -12.31163 -12.11842 -11.63786 -11.42726 -11.26609 -11.24077 -11.18742 -10.85204 -10.12743 -9.88410 -9.03806 -8.35555 -6.41489 -0.42308 -0.21028 0.80366 1.31502 1.40130 1.48286 1.49121 1.73353 2.02060 2.28830 2.39069 2.85336 3.01285 3.04037 3.20779 3.57391 3.77348 3.91177 4.19040 4.47186 4.53147 4.58085 4.71037 4.73317 4.76811 4.82724 4.89410 5.00053 5.04075 5.18237 5.30845 5.34597 5.43324 5.45348 5.61137 5.68444 5.87843 6.24983 6.61781 6.86821 7.06163 7.23482 7.51175 8.79410 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.047772 B = 0.002990 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.979743 B = 9361.009249 C = 9563.918954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.243 3.757 3 N -0.571 5.571 4 C 0.255 3.745 5 C -0.092 4.092 6 C -0.054 4.054 7 C 0.154 3.846 8 N -0.662 5.662 9 C 0.702 3.298 10 O -0.614 6.614 11 N -0.704 5.704 12 C 0.261 3.739 13 H 0.030 0.970 14 C -0.158 4.158 15 C -0.531 4.531 16 H 0.060 0.940 17 C 0.029 3.971 18 N -0.934 5.934 19 Si 0.937 3.063 20 H -0.263 1.263 21 H -0.296 1.296 22 H -0.257 1.257 23 C 0.067 3.933 24 N -0.277 5.277 25 N -0.366 5.366 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.180 0.820 30 H 0.157 0.843 31 H 0.430 0.570 32 H 0.409 0.591 33 H 0.040 0.960 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.270 0.730 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.966 -0.633 -1.481 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.037 4.037 3 N -0.303 5.303 4 C 0.003 3.997 5 C -0.114 4.114 6 C -0.082 4.082 7 C 0.053 3.947 8 N -0.313 5.313 9 C 0.403 3.597 10 O -0.493 6.493 11 N -0.357 5.357 12 C 0.156 3.844 13 H 0.048 0.952 14 C -0.217 4.217 15 C -0.569 4.569 16 H 0.078 0.922 17 C -0.171 4.171 18 N -0.573 5.573 19 Si 0.764 3.236 20 H -0.189 1.189 21 H -0.224 1.224 22 H -0.181 1.181 23 C -0.065 4.065 24 N -0.050 5.050 25 N -0.200 5.200 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.197 0.803 30 H 0.175 0.825 31 H 0.270 0.730 32 H 0.245 0.755 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -22.333 -0.136 -0.901 22.351 hybrid contribution 1.163 -0.350 0.122 1.221 sum -21.169 -0.486 -0.779 21.189 Atomic orbital electron populations 1.20375 0.80373 1.05553 1.05324 1.25303 1.00186 0.84836 0.93341 1.70781 0.98618 1.30196 1.30687 1.22115 0.94969 0.83085 0.99544 1.20383 0.86030 1.02038 1.02906 1.21496 0.99471 0.93112 0.94076 1.16630 0.84498 0.91222 1.02301 1.42176 1.06365 1.26038 1.56710 1.15992 0.80826 0.83201 0.79712 1.90896 1.84537 1.27063 1.46846 1.45118 1.06406 1.30331 1.53817 1.18685 0.82480 0.94096 0.89178 0.95185 1.22392 0.99509 1.02000 0.97758 1.21234 0.89745 1.32285 1.13654 0.92213 1.25531 0.95221 0.96783 0.99537 1.69970 0.98527 1.46577 1.42212 0.86037 0.77518 0.79527 0.80469 1.18854 1.22404 1.18123 1.21020 0.79572 1.00394 1.05545 1.47355 1.06080 1.07081 1.44510 1.78440 0.83426 1.21927 1.36187 0.88037 0.88128 0.88256 0.80301 0.82509 0.73040 0.75531 0.94163 0.93404 0.91622 0.92114 0.78170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.80 10.51 71.24 0.75 -0.05 16 2 C 0.24 6.01 8.09 138.70 1.12 7.14 16 3 N -0.57 -16.10 11.25 -186.03 -2.09 -18.20 16 4 C 0.26 6.95 7.88 134.10 1.06 8.01 16 5 C -0.09 -2.13 10.10 22.37 0.23 -1.91 16 6 C -0.05 -1.32 8.66 22.38 0.19 -1.13 16 7 C 0.15 3.43 6.24 37.83 0.24 3.66 16 8 N -0.66 -14.04 5.35 -317.76 -1.70 -15.74 16 9 C 0.70 21.92 8.28 179.06 1.48 23.41 16 10 O -0.61 -23.65 13.67 -4.02 -0.06 -23.71 16 11 N -0.70 -23.51 5.07 -461.41 -2.34 -25.85 16 12 C 0.26 11.20 2.15 44.24 0.10 11.29 16 13 H 0.03 1.44 6.64 -2.39 -0.02 1.43 16 14 C -0.16 -6.32 8.96 71.98 0.65 -5.68 16 15 C -0.53 -26.90 9.31 25.60 0.24 -26.66 16 16 H 0.06 3.21 7.98 -2.91 -0.02 3.19 16 17 C 0.03 1.56 5.45 84.66 0.46 2.03 16 18 N -0.93 -53.93 13.96 21.45 0.30 -53.63 16 19 Si 0.94 42.56 24.37 68.60 1.67 44.23 16 20 H -0.26 -11.29 6.87 99.48 0.68 -10.61 16 21 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.26 -11.40 6.53 99.48 0.65 -10.76 16 23 C 0.07 1.37 11.10 83.46 0.93 2.29 16 24 N -0.28 -7.22 3.90 -192.43 -0.75 -7.97 16 25 N -0.37 -9.84 12.78 -51.47 -0.66 -10.50 16 26 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.16 4.20 6.44 -2.91 -0.02 4.18 16 31 H 0.43 5.73 8.83 -92.71 -0.82 4.91 16 32 H 0.41 11.36 8.56 -92.71 -0.79 10.56 16 33 H 0.04 1.67 3.27 -2.39 -0.01 1.66 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.20 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -70.99 314.44 1.25 -69.74 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -0.55 Total: 19.23 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 7.43 Total: 22.40 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -7.24 Total: -131.89 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.06 Total: -23.71 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.67 Total: 44.23 kcal Total: -70.99 1.25 -69.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289594135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.715 kcal (2) G-P(sol) polarization free energy of solvation -70.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds