Wall clock time and date at job start Tue Mar 31 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32470 * 125.18753 * 2 1 4 4 C 1.32934 * 109.67985 * 179.97438 * 3 2 1 5 5 C 1.40660 * 132.78241 * 180.02562 * 4 3 2 6 6 C 1.36101 * 119.37912 * 179.97438 * 5 4 3 7 7 C 1.40747 * 119.57627 * 0.02562 * 6 5 4 8 8 N 1.40269 * 119.96347 * 180.02562 * 7 6 5 9 9 C 1.34775 * 119.99613 * 35.03126 * 8 7 6 10 10 O 1.21590 * 120.00423 * 355.38655 * 9 8 7 11 11 N 1.34785 * 119.99405 * 175.38830 * 9 8 7 12 12 C 1.46494 * 119.99942 * 0.02562 * 11 9 8 13 13 C 1.46498 * 119.99653 * 179.72396 * 11 9 8 14 14 C 1.50695 * 109.47421 * 270.27521 * 13 11 9 15 15 H 1.08010 * 119.99758 * 359.97438 * 14 13 11 16 16 C 1.37876 * 120.00447 * 180.02562 * 14 13 11 17 17 N 1.31507 * 120.00583 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99668 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47585 * 89.99983 * 18 16 14 20 20 H 1.48500 * 109.47087 * 209.99957 * 18 16 14 21 21 H 1.48501 * 109.47158 * 329.99713 * 18 16 14 22 22 C 1.35753 * 120.07224 * 0.26413 * 7 6 5 23 23 N 1.36060 * 120.48192 * 359.46247 * 22 7 6 24 24 N 1.31292 * 125.18490 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47058 * 90.01868 * 1 2 3 26 26 H 1.08997 * 109.47094 * 210.01895 * 1 2 3 27 27 H 1.08998 * 109.46915 * 330.01654 * 1 2 3 28 28 H 1.08005 * 120.31288 * 359.95786 * 5 4 3 29 29 H 1.07995 * 120.21349 * 180.02562 * 6 5 4 30 30 H 0.96999 * 119.99637 * 215.03784 * 8 7 6 31 31 H 1.09000 * 109.47080 * 269.72507 * 12 11 9 32 32 H 1.08995 * 109.47436 * 29.72439 * 12 11 9 33 33 H 1.09001 * 109.47338 * 149.72477 * 12 11 9 34 34 H 1.09002 * 109.47448 * 30.27650 * 13 11 9 35 35 H 1.09007 * 109.46794 * 150.27532 * 13 11 9 36 36 H 0.96993 * 120.00462 * 179.97438 * 17 16 14 37 37 H 1.08005 * 119.76058 * 179.70296 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2704 1.0826 0.0000 4 6 3.5514 0.7272 0.0006 5 6 4.7480 1.4666 0.0013 6 6 5.9394 0.8086 0.0023 7 6 5.9557 -0.5988 0.0020 8 7 7.1790 -1.2852 0.0036 9 6 8.2334 -0.7816 0.6752 10 8 8.1501 0.3075 1.2094 11 7 9.3802 -1.4852 0.7545 12 6 9.4807 -2.7971 0.1104 13 6 10.5284 -0.9351 1.4794 14 6 11.3785 -0.1260 0.5341 15 1 11.0924 -0.0313 -0.5031 16 6 12.5221 0.4926 0.9930 17 7 13.2642 1.1983 0.1680 18 14 13.0180 0.3271 2.7863 19 1 13.8934 -0.8612 2.9502 20 1 13.7528 1.5456 3.2112 21 1 11.8021 0.1653 3.6233 22 6 4.7889 -1.2926 -0.0046 23 7 3.5964 -0.6376 -0.0001 24 7 2.2636 -1.0730 0.0005 25 1 -0.3633 -0.0003 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3633 0.8901 0.5136 28 1 4.7217 2.5463 0.0008 29 1 6.8663 1.3628 0.0032 30 1 7.2660 -2.1223 -0.4788 31 1 9.1753 -3.5716 0.8139 32 1 8.8303 -2.8234 -0.7639 33 1 10.5113 -2.9724 -0.1982 34 1 10.1750 -0.2956 2.2882 35 1 11.1212 -1.7507 1.8936 36 1 14.0685 1.6338 0.4909 37 1 4.8074 -2.3725 -0.0096 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289664757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:53 Heat of formation + Delta-G solvation = 111.362606 kcal Electronic energy + Delta-G solvation = -22100.630885 eV Core-core repulsion = 18688.367855 eV Total energy + Delta-G solvation = -3412.263029 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.70851 -40.32413 -37.99334 -35.28443 -34.61932 -33.59065 -32.60883 -31.41868 -29.78119 -28.78644 -27.74629 -26.06317 -23.99406 -23.43091 -22.25271 -20.97027 -19.95721 -18.28962 -17.97458 -17.08167 -16.95066 -16.49557 -16.28691 -15.22885 -15.12022 -14.85840 -14.15888 -13.81017 -13.78401 -13.47747 -13.36656 -13.10999 -12.96066 -12.52793 -12.48822 -12.17355 -11.93598 -11.68786 -11.47835 -11.22258 -11.07487 -10.62505 -10.30773 -10.17385 -10.13917 -9.74994 -9.55237 -8.95338 -8.67436 -8.12623 -7.83210 -6.16750 -4.16761 0.59130 0.89546 1.86261 2.54292 2.90911 3.21603 3.25902 3.31550 3.33737 3.60873 3.83864 4.01940 4.10964 4.32431 4.52545 4.73445 4.93737 5.07822 5.16005 5.27933 5.30222 5.33854 5.53878 5.61737 5.80229 5.82988 5.95388 6.10341 6.23388 6.32133 6.35827 6.47223 6.72814 6.75644 7.03459 7.22800 7.50517 7.92548 8.17999 8.36815 8.82798 8.88331 9.42550 10.96402 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.035675 B = 0.003275 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.671512 B = 8548.491552 C = 8915.985081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.248 3.752 3 N -0.548 5.548 4 C 0.273 3.727 5 C -0.097 4.097 6 C -0.049 4.049 7 C 0.163 3.837 8 N -0.686 5.686 9 C 0.704 3.296 10 O -0.564 6.564 11 N -0.602 5.602 12 C 0.080 3.920 13 C 0.229 3.771 14 C -0.533 4.533 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.895 5.895 18 Si 0.874 3.126 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.263 1.263 22 C 0.052 3.948 23 N -0.268 5.268 24 N -0.347 5.347 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.162 0.838 29 H 0.174 0.826 30 H 0.408 0.592 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.965 -7.463 -1.406 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.032 4.032 3 N -0.280 5.280 4 C 0.020 3.980 5 C -0.119 4.119 6 C -0.075 4.075 7 C 0.062 3.938 8 N -0.337 5.337 9 C 0.405 3.595 10 O -0.440 6.440 11 N -0.337 5.337 12 C -0.064 4.064 13 C 0.109 3.891 14 C -0.572 4.572 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.701 3.299 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.188 1.188 22 C -0.080 4.080 23 N -0.042 5.042 24 N -0.181 5.181 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.179 0.821 29 H 0.191 0.809 30 H 0.246 0.754 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -18.276 -6.981 -0.968 19.587 hybrid contribution 0.875 -0.592 0.493 1.166 sum -17.400 -7.573 -0.475 18.983 Atomic orbital electron populations 1.20137 0.83506 1.04197 1.03893 1.24395 0.98363 0.85602 0.94800 1.70771 0.98178 1.29235 1.29774 1.21815 0.94496 0.82534 0.99142 1.20265 0.86795 1.01223 1.03610 1.21741 1.00013 0.92752 0.93040 1.16702 0.84373 0.91434 1.01329 1.42752 1.08448 1.27458 1.55061 1.15772 0.79895 0.84219 0.79571 1.90900 1.82100 1.19812 1.51208 1.47150 1.12149 1.18578 1.55799 1.21679 1.03886 0.84602 0.96190 1.19683 0.82204 0.94324 0.92891 1.21310 1.07190 1.31203 0.97497 0.90706 1.24840 0.96005 0.94494 0.97553 1.69881 1.15452 1.32823 1.35161 0.86876 0.79260 0.78080 0.85700 1.20080 1.20865 1.18755 1.20658 0.80564 0.98993 1.07782 1.47177 1.05539 1.06965 1.44471 1.78468 0.83250 1.21144 1.35259 0.89590 0.89862 0.89318 0.82058 0.80875 0.75435 0.93215 0.92740 0.89780 0.93738 0.95219 0.92439 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 36.01 0.38 -0.11 16 2 C 0.25 3.38 8.09 -157.04 -1.27 2.11 16 3 N -0.55 -8.38 11.25 -10.15 -0.11 -8.49 16 4 C 0.27 4.09 7.88 -156.31 -1.23 2.85 16 5 C -0.10 -1.29 10.10 -39.44 -0.40 -1.68 16 6 C -0.05 -0.69 8.69 -39.40 -0.34 -1.03 16 7 C 0.16 2.15 6.26 -83.94 -0.53 1.63 16 8 N -0.69 -9.08 5.22 -14.41 -0.08 -9.15 16 9 C 0.70 12.87 8.13 -86.91 -0.71 12.17 16 10 O -0.56 -12.46 13.36 5.29 0.07 -12.39 16 11 N -0.60 -11.10 2.86 -188.75 -0.54 -11.64 16 12 C 0.08 1.03 10.25 59.84 0.61 1.65 16 13 C 0.23 5.19 4.23 -5.20 -0.02 5.17 16 14 C -0.53 -14.43 9.94 -34.44 -0.34 -14.78 16 15 H 0.07 2.23 8.06 -52.48 -0.42 1.80 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 18 Si 0.87 20.57 27.47 -169.99 -4.67 15.90 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 22 C 0.05 0.64 11.10 -16.57 -0.18 0.45 16 23 N -0.27 -3.88 3.90 -12.17 -0.05 -3.93 16 24 N -0.35 -5.10 12.78 32.38 0.41 -4.69 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.17 2.75 6.27 -52.49 -0.33 2.42 16 30 H 0.41 3.94 6.51 -40.82 -0.27 3.68 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.53 6.29 -51.93 -0.33 0.21 16 33 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 34 H 0.04 1.09 6.49 -51.93 -0.34 0.76 16 35 H 0.03 0.63 7.50 -51.92 -0.39 0.24 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -35.09 318.36 -7.71 -42.80 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.19 Total: 2.26 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -4.13 Total: 10.39 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: 0.41 Total: -63.76 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.07 Total: -12.39 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.09 -7.71 -42.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289664757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.166 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds