Wall clock time and date at job start Tue Mar 31 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32470 * 125.18753 * 2 1 4 4 C 1.32934 * 109.67985 * 179.97438 * 3 2 1 5 5 C 1.40660 * 132.78241 * 180.02562 * 4 3 2 6 6 C 1.36101 * 119.37912 * 179.97438 * 5 4 3 7 7 C 1.40747 * 119.57627 * 0.02562 * 6 5 4 8 8 N 1.40269 * 119.96347 * 180.02562 * 7 6 5 9 9 C 1.34775 * 119.99613 * 35.03126 * 8 7 6 10 10 O 1.21590 * 120.00423 * 355.38655 * 9 8 7 11 11 N 1.34785 * 119.99405 * 175.38830 * 9 8 7 12 12 C 1.46494 * 119.99942 * 0.02562 * 11 9 8 13 13 C 1.46498 * 119.99653 * 179.72396 * 11 9 8 14 14 C 1.50695 * 109.47421 * 270.27521 * 13 11 9 15 15 H 1.08010 * 119.99758 * 359.97438 * 14 13 11 16 16 C 1.37876 * 120.00447 * 180.02562 * 14 13 11 17 17 N 1.31507 * 120.00583 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99668 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47585 * 89.99983 * 18 16 14 20 20 H 1.48500 * 109.47087 * 209.99957 * 18 16 14 21 21 H 1.48501 * 109.47158 * 329.99713 * 18 16 14 22 22 C 1.35753 * 120.07224 * 0.26413 * 7 6 5 23 23 N 1.36060 * 120.48192 * 359.46247 * 22 7 6 24 24 N 1.31292 * 125.18490 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47058 * 90.01868 * 1 2 3 26 26 H 1.08997 * 109.47094 * 210.01895 * 1 2 3 27 27 H 1.08998 * 109.46915 * 330.01654 * 1 2 3 28 28 H 1.08005 * 120.31288 * 359.95786 * 5 4 3 29 29 H 1.07995 * 120.21349 * 180.02562 * 6 5 4 30 30 H 0.96999 * 119.99637 * 215.03784 * 8 7 6 31 31 H 1.09000 * 109.47080 * 269.72507 * 12 11 9 32 32 H 1.08995 * 109.47436 * 29.72439 * 12 11 9 33 33 H 1.09001 * 109.47338 * 149.72477 * 12 11 9 34 34 H 1.09002 * 109.47448 * 30.27650 * 13 11 9 35 35 H 1.09007 * 109.46794 * 150.27532 * 13 11 9 36 36 H 0.96993 * 120.00462 * 179.97438 * 17 16 14 37 37 H 1.08005 * 119.76058 * 179.70296 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2704 1.0826 0.0000 4 6 3.5514 0.7272 0.0006 5 6 4.7480 1.4666 0.0013 6 6 5.9394 0.8086 0.0023 7 6 5.9557 -0.5988 0.0020 8 7 7.1790 -1.2852 0.0036 9 6 8.2334 -0.7816 0.6752 10 8 8.1501 0.3075 1.2094 11 7 9.3802 -1.4852 0.7545 12 6 9.4807 -2.7971 0.1104 13 6 10.5284 -0.9351 1.4794 14 6 11.3785 -0.1260 0.5341 15 1 11.0924 -0.0313 -0.5031 16 6 12.5221 0.4926 0.9930 17 7 13.2642 1.1983 0.1680 18 14 13.0180 0.3271 2.7863 19 1 13.8934 -0.8612 2.9502 20 1 13.7528 1.5456 3.2112 21 1 11.8021 0.1653 3.6233 22 6 4.7889 -1.2926 -0.0046 23 7 3.5964 -0.6376 -0.0001 24 7 2.2636 -1.0730 0.0005 25 1 -0.3633 -0.0003 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3633 0.8901 0.5136 28 1 4.7217 2.5463 0.0008 29 1 6.8663 1.3628 0.0032 30 1 7.2660 -2.1223 -0.4788 31 1 9.1753 -3.5716 0.8139 32 1 8.8303 -2.8234 -0.7639 33 1 10.5113 -2.9724 -0.1982 34 1 10.1750 -0.2956 2.2882 35 1 11.1212 -1.7507 1.8936 36 1 14.0685 1.6338 0.4909 37 1 4.8074 -2.3725 -0.0096 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289664757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:53 Heat of formation + Delta-G solvation = 87.548479 kcal Electronic energy + Delta-G solvation = -22101.663543 eV Core-core repulsion = 18688.367855 eV Total energy + Delta-G solvation = -3413.295687 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.77482 -41.62824 -39.16463 -36.75826 -35.88493 -34.71678 -34.54994 -32.42967 -30.93756 -30.29292 -28.82838 -27.36113 -25.13077 -24.83792 -23.67974 -22.02595 -21.27679 -19.51787 -19.19474 -19.08772 -18.08388 -17.66827 -17.37164 -16.77695 -16.55521 -15.97782 -15.74327 -15.14605 -14.80518 -14.60279 -14.37427 -14.34612 -14.12541 -14.00986 -13.64042 -13.30654 -13.21802 -12.97218 -12.83113 -12.51800 -12.38014 -12.31596 -12.00940 -11.72940 -11.41796 -11.23450 -11.12061 -10.78607 -10.09141 -9.49384 -9.02775 -8.30410 -6.35420 -0.43766 -0.22417 0.79570 1.36336 1.40783 1.48727 1.51099 1.71945 2.04238 2.34632 2.37363 2.84477 2.88363 3.04668 3.07425 3.53131 3.76834 3.88655 4.16804 4.30484 4.50299 4.62358 4.71727 4.74790 4.80120 4.83240 4.88946 4.94297 4.97561 5.04249 5.17827 5.34202 5.43732 5.47693 5.51830 5.68062 5.87092 6.27504 6.66736 6.86213 6.90091 7.25922 7.48809 8.86353 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.035675 B = 0.003275 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.671512 B = 8548.491552 C = 8915.985081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.243 3.757 3 N -0.571 5.571 4 C 0.258 3.742 5 C -0.094 4.094 6 C -0.057 4.057 7 C 0.149 3.851 8 N -0.662 5.662 9 C 0.699 3.301 10 O -0.611 6.611 11 N -0.612 5.612 12 C 0.072 3.928 13 C 0.238 3.762 14 C -0.534 4.534 15 H 0.031 0.969 16 C 0.012 3.988 17 N -0.946 5.946 18 Si 0.946 3.054 19 H -0.253 1.253 20 H -0.287 1.287 21 H -0.252 1.252 22 C 0.073 3.927 23 N -0.277 5.277 24 N -0.363 5.363 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.177 0.823 29 H 0.152 0.848 30 H 0.427 0.573 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.055 0.945 36 H 0.267 0.733 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.539 -9.778 -0.509 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.036 4.036 3 N -0.303 5.303 4 C 0.005 3.995 5 C -0.116 4.116 6 C -0.084 4.084 7 C 0.049 3.951 8 N -0.315 5.315 9 C 0.401 3.599 10 O -0.490 6.490 11 N -0.345 5.345 12 C -0.070 4.070 13 C 0.116 3.884 14 C -0.573 4.573 15 H 0.049 0.951 16 C -0.186 4.186 17 N -0.587 5.587 18 Si 0.769 3.231 19 H -0.177 1.177 20 H -0.213 1.213 21 H -0.176 1.176 22 C -0.059 4.059 23 N -0.050 5.050 24 N -0.197 5.197 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.194 0.806 29 H 0.170 0.830 30 H 0.269 0.731 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -19.900 -9.373 -0.114 21.997 hybrid contribution 1.252 0.133 0.099 1.263 sum -18.648 -9.240 -0.015 20.812 Atomic orbital electron populations 1.20380 0.80267 1.05507 1.05434 1.25329 1.00214 0.84797 0.93266 1.70789 0.98541 1.30251 1.30703 1.22044 0.94856 0.83131 0.99452 1.20360 0.86127 1.01971 1.03157 1.21592 0.99390 0.93553 0.93848 1.16663 0.84683 0.91068 1.02707 1.42284 1.07231 1.27850 1.54170 1.15942 0.80721 0.83677 0.79553 1.90873 1.83096 1.21887 1.53165 1.47094 1.11083 1.20344 1.56029 1.22014 1.04355 0.82556 0.98031 1.19329 0.83101 0.94351 0.91651 1.21571 1.07744 1.31579 0.96403 0.95072 1.25813 0.96097 0.94107 1.02629 1.70043 1.16354 1.34558 1.37696 0.85745 0.79355 0.78593 0.79457 1.17698 1.21260 1.17577 1.21031 0.79367 1.00376 1.05079 1.47377 1.06139 1.07007 1.44515 1.78434 0.83257 1.21810 1.36206 0.87780 0.88239 0.88280 0.80600 0.83048 0.73100 0.89753 0.89578 0.90789 0.95649 0.92665 0.92364 0.77740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.83 10.51 71.24 0.75 -0.08 16 2 C 0.24 6.24 8.09 138.70 1.12 7.36 16 3 N -0.57 -16.94 11.25 -186.02 -2.09 -19.04 16 4 C 0.26 7.54 7.88 134.09 1.06 8.59 16 5 C -0.09 -2.51 10.10 22.36 0.23 -2.29 16 6 C -0.06 -1.62 8.69 22.39 0.19 -1.43 16 7 C 0.15 3.77 6.26 37.83 0.24 4.01 16 8 N -0.66 -16.40 5.22 -317.75 -1.66 -18.06 16 9 C 0.70 25.25 8.13 179.05 1.46 26.71 16 10 O -0.61 -27.60 13.36 -4.00 -0.05 -27.65 16 11 N -0.61 -21.87 2.86 -869.32 -2.48 -24.35 16 12 C 0.07 1.66 10.25 127.77 1.31 2.97 16 13 C 0.24 10.65 4.23 85.63 0.36 11.01 16 14 C -0.53 -29.60 9.94 25.60 0.25 -29.35 16 15 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 16 C 0.01 0.65 5.47 84.66 0.46 1.12 16 17 N -0.95 -58.05 13.96 21.45 0.30 -57.75 16 18 Si 0.95 42.42 27.47 68.60 1.88 44.30 16 19 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 22 C 0.07 1.61 11.10 83.46 0.93 2.54 16 23 N -0.28 -7.59 3.90 -192.43 -0.75 -8.34 16 24 N -0.36 -10.01 12.78 -51.46 -0.66 -10.66 16 25 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.18 3.95 8.06 -2.91 -0.02 3.92 16 29 H 0.15 5.10 6.27 -2.91 -0.02 5.08 16 30 H 0.43 6.92 6.51 -92.71 -0.60 6.32 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.39 6.29 -2.39 -0.02 1.38 16 33 H 0.07 1.88 8.07 -2.39 -0.02 1.86 16 34 H 0.03 1.24 6.49 -2.39 -0.02 1.22 16 35 H 0.06 2.20 7.50 -2.38 -0.02 2.18 16 36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.21 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -79.57 318.36 3.30 -76.27 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.46 Total: 14.13 kcal Atomic # 6 Polarization: 22.80 SS G_CDS: 8.36 Total: 31.16 kcal Atomic # 7 Polarization: -130.86 SS G_CDS: -7.34 Total: -138.20 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.05 Total: -27.65 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.88 Total: 44.30 kcal Total: -79.57 3.30 -76.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289664757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.819 kcal (2) G-P(sol) polarization free energy of solvation -79.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds