Wall clock time and date at job start Tue Mar 31 2020 06:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99793 * 2 1 4 4 H 1.48505 * 109.47086 * 239.99967 * 3 2 1 5 5 H 1.48503 * 109.47424 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47037 * 120.00228 * 3 2 1 7 7 C 1.37878 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00181 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99928 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47085 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47020 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00308 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99759 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99916 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47178 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47020 * 179.97438 * 15 14 13 17 17 C 1.38291 * 120.11946 * 90.00140 * 16 15 14 18 18 C 1.37929 * 120.35446 * 180.17130 * 17 16 15 19 19 C 1.39289 * 120.24278 * 0.06555 * 18 17 16 20 20 C 1.38981 * 118.85498 * 359.58943 * 19 18 17 21 21 C 1.37660 * 120.77699 * 0.54611 * 20 19 18 22 22 C 1.51649 * 106.97907 * 180.57567 * 20 19 18 23 23 C 1.54713 * 101.93881 * 15.71381 * 22 20 19 24 24 O 1.36126 * 129.87617 * 179.56466 * 19 18 17 25 25 H 0.96999 * 120.00362 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46927 * 60.00370 * 9 7 2 27 27 H 1.09002 * 109.47035 * 300.00333 * 9 7 2 28 28 H 1.09002 * 109.46814 * 59.99811 * 10 9 7 29 29 H 1.09006 * 109.46949 * 300.00339 * 10 9 7 30 30 H 0.96999 * 120.00177 * 359.97438 * 13 11 10 31 31 H 1.09001 * 109.47043 * 59.99881 * 14 13 11 32 32 H 1.09002 * 109.46825 * 299.99901 * 14 13 11 33 33 H 1.09002 * 109.46814 * 59.99612 * 15 14 13 34 34 H 1.09006 * 109.46949 * 300.00139 * 15 14 13 35 35 H 1.08007 * 119.81963 * 0.19443 * 17 16 15 36 36 H 1.07996 * 119.87833 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.98294 * 179.61345 * 21 20 19 38 38 H 1.09002 * 110.94508 * 257.54041 * 22 20 19 39 39 H 1.08997 * 110.93949 * 133.88365 * 22 20 19 40 40 H 1.09003 * 110.74698 * 92.94680 * 23 22 20 41 41 H 1.09001 * 110.74689 * 216.11069 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1343 -0.0008 14 6 1.4334 -7.4031 -0.0019 15 6 2.4277 -8.5660 -0.0018 16 6 1.6742 -9.8711 -0.0024 17 6 1.3277 -10.4718 -1.1989 18 6 0.6350 -11.6645 -1.2051 19 6 0.2770 -12.2741 -0.0049 20 6 0.6373 -11.6642 1.1908 21 6 1.3263 -10.4724 1.1940 22 6 0.1318 -12.5526 2.3110 23 6 -0.1632 -13.8744 1.5630 24 8 -0.4050 -13.4312 0.2169 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8895 29 1 2.8721 -3.6043 -0.8905 30 1 3.1359 -6.1343 -0.0004 31 1 0.8077 -7.4606 -0.8926 32 1 0.8058 -7.4611 0.8874 33 1 3.0537 -8.5086 0.8887 34 1 3.0550 -8.5078 -0.8914 35 1 1.6014 -10.0047 -2.1334 36 1 0.3687 -12.1271 -2.1439 37 1 1.5944 -10.0065 2.1308 38 1 -0.7770 -12.1437 2.7527 39 1 0.9004 -12.6977 3.0701 40 1 0.6989 -14.5404 1.6013 41 1 -1.0456 -14.3631 1.9760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291634709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:45 Heat of formation + Delta-G solvation = -64.436723 kcal Electronic energy + Delta-G solvation = -21244.127673 eV Core-core repulsion = 17895.489005 eV Total energy + Delta-G solvation = -3348.638668 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.38792 -39.18634 -38.16531 -35.06723 -33.41800 -33.03217 -32.19017 -30.88381 -29.59665 -28.25620 -25.70480 -23.99609 -23.30972 -22.22563 -21.41013 -21.03932 -19.52544 -17.70842 -17.07308 -16.84493 -16.47326 -15.90023 -15.62341 -15.37783 -14.94316 -14.42734 -14.39542 -14.11822 -13.57152 -13.50776 -13.39871 -13.15297 -12.87910 -12.27760 -12.19430 -12.14382 -12.09770 -11.82992 -11.42422 -11.13892 -11.04160 -10.95579 -10.88869 -10.60179 -9.92613 -9.63988 -9.18553 -9.16127 -8.99655 -8.74645 -8.31568 -8.29754 -5.93930 -3.98458 0.98234 1.06390 2.91981 3.30254 3.32587 3.35678 3.40223 3.41908 3.62769 4.03780 4.19886 4.48952 4.52612 4.59986 4.66627 4.80802 4.93205 4.97563 5.07159 5.10631 5.28028 5.33368 5.37103 5.40657 5.46130 5.61922 5.69515 5.86409 5.97137 6.04020 6.08893 6.25671 6.27154 6.29531 6.34579 6.75339 6.87673 6.92565 7.76292 7.89079 7.92655 8.09773 8.41007 8.82503 9.10223 9.64819 11.16973 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.045825 B = 0.002117 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.873069 B =13225.368320 C =13335.759263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.535 6.535 13 N -0.746 5.746 14 C 0.124 3.876 15 C -0.085 4.085 16 C -0.105 4.105 17 C -0.077 4.077 18 C -0.135 4.135 19 C 0.100 3.900 20 C -0.174 4.174 21 C -0.063 4.063 22 C -0.111 4.111 23 C 0.052 3.948 24 O -0.307 6.307 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.397 0.603 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.630 -28.903 2.384 29.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.410 6.410 13 N -0.401 5.401 14 C 0.000 4.000 15 C -0.123 4.123 16 C -0.106 4.106 17 C -0.095 4.095 18 C -0.154 4.154 19 C 0.055 3.945 20 C -0.175 4.175 21 C -0.081 4.081 22 C -0.148 4.148 23 C -0.023 4.023 24 O -0.221 6.221 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.230 0.770 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.409 -28.908 2.247 29.328 hybrid contribution 0.914 0.836 0.200 1.254 sum 5.322 -28.072 2.447 28.676 Atomic orbital electron populations 1.69990 1.06051 1.26681 1.50121 1.25035 0.94839 0.99234 0.95344 0.86644 0.79525 0.83169 0.78520 1.20256 1.21305 1.20270 1.21194 0.92890 0.91044 1.51462 0.92648 1.18897 0.93199 0.89385 0.98615 1.21863 1.00700 0.91984 1.02450 1.21562 0.88659 0.85664 0.74436 1.90672 1.14531 1.87660 1.48123 1.46221 1.10021 1.05634 1.78197 1.21222 0.94267 0.82044 1.02467 1.20711 0.97295 0.90631 1.03666 1.19559 1.01471 0.96807 0.92754 1.20820 0.96720 0.93873 0.98131 1.20246 1.02335 0.97203 0.95630 1.19610 0.93141 0.87149 0.94632 1.20733 1.04278 0.98010 0.94477 1.20188 0.96560 0.93165 0.98154 1.21802 1.02399 0.93497 0.97098 1.23823 1.02611 0.96328 0.79575 1.86818 1.65082 1.37645 1.32526 0.92901 0.95828 0.95856 0.90266 0.90257 0.76957 0.91715 0.91803 0.90301 0.90157 0.84880 0.85364 0.85613 0.89025 0.89030 0.90583 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.68 13.29 55.43 0.74 -26.95 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.65 5.64 -27.89 -0.16 -2.81 16 11 C 0.51 9.90 7.83 -10.99 -0.09 9.81 16 12 O -0.53 -12.94 15.98 5.56 0.09 -12.85 16 13 N -0.75 -10.31 5.56 -60.29 -0.33 -10.64 16 14 C 0.12 1.54 5.66 -4.04 -0.02 1.52 16 15 C -0.09 -0.73 5.47 -27.89 -0.15 -0.88 16 16 C -0.11 -0.99 5.14 -104.56 -0.54 -1.53 16 17 C -0.08 -0.71 9.68 -39.68 -0.38 -1.10 16 18 C -0.14 -1.32 10.06 -39.30 -0.40 -1.72 16 19 C 0.10 1.05 7.04 -38.92 -0.27 0.78 16 20 C -0.17 -1.67 6.27 -104.09 -0.65 -2.32 16 21 C -0.06 -0.59 9.69 -39.75 -0.39 -0.97 16 22 C -0.11 -0.74 7.11 -26.51 -0.19 -0.93 16 23 C 0.05 0.33 8.01 38.06 0.30 0.63 16 24 O -0.31 -3.14 11.10 -20.14 -0.22 -3.36 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.40 4.12 8.47 -40.82 -0.35 3.77 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -36.03 349.43 -9.17 -45.20 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.22 Total: -0.95 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -3.46 Total: -12.47 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.40 Total: -37.59 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.13 Total: -16.22 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.03 -9.17 -45.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291634709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.241 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds