Wall clock time and date at job start Tue Mar 31 2020 06:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99793 * 2 1 4 4 H 1.48505 * 109.47086 * 239.99967 * 3 2 1 5 5 H 1.48503 * 109.47424 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47037 * 120.00228 * 3 2 1 7 7 C 1.37878 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00181 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99928 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47085 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47020 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00308 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99759 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99916 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47178 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47020 * 179.97438 * 15 14 13 17 17 C 1.38291 * 120.11946 * 90.00140 * 16 15 14 18 18 C 1.37929 * 120.35446 * 180.17130 * 17 16 15 19 19 C 1.39289 * 120.24278 * 0.06555 * 18 17 16 20 20 C 1.38981 * 118.85498 * 359.58943 * 19 18 17 21 21 C 1.37660 * 120.77699 * 0.54611 * 20 19 18 22 22 C 1.51649 * 106.97907 * 180.57567 * 20 19 18 23 23 C 1.54713 * 101.93881 * 15.71381 * 22 20 19 24 24 O 1.36126 * 129.87617 * 179.56466 * 19 18 17 25 25 H 0.96999 * 120.00362 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46927 * 60.00370 * 9 7 2 27 27 H 1.09002 * 109.47035 * 300.00333 * 9 7 2 28 28 H 1.09002 * 109.46814 * 59.99811 * 10 9 7 29 29 H 1.09006 * 109.46949 * 300.00339 * 10 9 7 30 30 H 0.96999 * 120.00177 * 359.97438 * 13 11 10 31 31 H 1.09001 * 109.47043 * 59.99881 * 14 13 11 32 32 H 1.09002 * 109.46825 * 299.99901 * 14 13 11 33 33 H 1.09002 * 109.46814 * 59.99612 * 15 14 13 34 34 H 1.09006 * 109.46949 * 300.00139 * 15 14 13 35 35 H 1.08007 * 119.81963 * 0.19443 * 17 16 15 36 36 H 1.07996 * 119.87833 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.98294 * 179.61345 * 21 20 19 38 38 H 1.09002 * 110.94508 * 257.54041 * 22 20 19 39 39 H 1.08997 * 110.93949 * 133.88365 * 22 20 19 40 40 H 1.09003 * 110.74698 * 92.94680 * 23 22 20 41 41 H 1.09001 * 110.74689 * 216.11069 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1343 -0.0008 14 6 1.4334 -7.4031 -0.0019 15 6 2.4277 -8.5660 -0.0018 16 6 1.6742 -9.8711 -0.0024 17 6 1.3277 -10.4718 -1.1989 18 6 0.6350 -11.6645 -1.2051 19 6 0.2770 -12.2741 -0.0049 20 6 0.6373 -11.6642 1.1908 21 6 1.3263 -10.4724 1.1940 22 6 0.1318 -12.5526 2.3110 23 6 -0.1632 -13.8744 1.5630 24 8 -0.4050 -13.4312 0.2169 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8895 29 1 2.8721 -3.6043 -0.8905 30 1 3.1359 -6.1343 -0.0004 31 1 0.8077 -7.4606 -0.8926 32 1 0.8058 -7.4611 0.8874 33 1 3.0537 -8.5086 0.8887 34 1 3.0550 -8.5078 -0.8914 35 1 1.6014 -10.0047 -2.1334 36 1 0.3687 -12.1271 -2.1439 37 1 1.5944 -10.0065 2.1308 38 1 -0.7770 -12.1437 2.7527 39 1 0.9004 -12.6977 3.0701 40 1 0.6989 -14.5404 1.6013 41 1 -1.0456 -14.3631 1.9760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291634709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:44 Heat of formation + Delta-G solvation = -88.537201 kcal Electronic energy + Delta-G solvation = -21245.172749 eV Core-core repulsion = 17895.489005 eV Total energy + Delta-G solvation = -3349.683743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.03399 -40.66131 -38.93983 -36.27590 -35.51940 -33.67364 -33.35692 -32.65204 -30.21133 -29.29907 -27.51087 -24.94849 -24.17393 -23.18918 -22.84852 -21.86059 -20.99956 -18.79231 -18.35179 -17.72960 -17.42739 -17.05260 -17.02199 -16.68732 -16.43122 -15.91031 -15.27151 -15.06335 -14.79307 -14.41957 -14.16454 -14.12836 -14.00260 -13.85686 -13.63832 -13.22531 -12.89616 -12.76747 -12.71029 -12.55805 -12.46385 -12.31034 -11.88477 -11.70447 -11.63084 -11.58198 -11.30860 -10.72307 -10.55024 -10.05265 -9.85776 -9.02516 -8.16538 -6.30863 0.27659 0.35306 1.43073 1.47858 1.55542 1.74764 2.26975 2.32464 2.46121 2.71077 3.16133 3.45983 3.65451 3.89372 3.96373 4.05103 4.13388 4.14546 4.20403 4.33823 4.42220 4.53214 4.54861 4.59610 4.63895 4.67370 4.84140 4.87142 4.90000 5.05112 5.15421 5.16336 5.27610 5.39593 5.48297 5.54787 5.61914 5.65121 5.66305 5.87149 6.18988 6.20673 6.66869 6.87930 7.38606 7.40558 8.95957 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.045825 B = 0.002117 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.873069 B =13225.368320 C =13335.759263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.010 4.010 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.040 3.960 10 C -0.119 4.119 11 C 0.509 3.491 12 O -0.594 6.594 13 N -0.717 5.717 14 C 0.125 3.875 15 C -0.070 4.070 16 C -0.114 4.114 17 C -0.083 4.083 18 C -0.151 4.151 19 C 0.078 3.922 20 C -0.187 4.187 21 C -0.072 4.072 22 C -0.109 4.109 23 C 0.046 3.954 24 O -0.329 6.329 25 H 0.262 0.738 26 H -0.019 1.019 27 H -0.020 1.020 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.419 0.581 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.149 0.851 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.604 -29.390 2.846 30.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.096 0.904 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.297 3.703 12 O -0.474 6.474 13 N -0.371 5.371 14 C 0.001 3.999 15 C -0.107 4.107 16 C -0.115 4.115 17 C -0.101 4.101 18 C -0.169 4.169 19 C 0.033 3.967 20 C -0.188 4.188 21 C -0.090 4.090 22 C -0.146 4.146 23 C -0.028 4.028 24 O -0.244 6.244 25 H 0.071 0.929 26 H -0.001 1.001 27 H -0.001 1.001 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.257 0.743 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.167 0.833 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.112 0.888 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.462 -29.450 2.714 30.502 hybrid contribution -0.053 0.880 0.063 0.884 sum 7.408 -28.570 2.776 29.645 Atomic orbital electron populations 1.70180 1.08363 1.27853 1.51485 1.26180 0.95749 1.04077 0.94690 0.85348 0.78003 0.77209 0.79510 1.18626 1.21470 1.18621 1.21707 0.94064 0.91573 1.50760 0.90413 1.18701 0.93794 0.92651 0.94585 1.21639 0.99247 0.89962 1.05020 1.21376 0.87781 0.86960 0.74178 1.90660 1.16973 1.88487 1.51252 1.45879 1.11116 1.04553 1.75532 1.21299 0.95106 0.82453 1.01066 1.20616 0.96292 0.88153 1.05665 1.19708 1.01783 0.97139 0.92896 1.21066 0.96381 0.93703 0.98925 1.20500 1.02686 0.97683 0.96043 1.19920 0.93676 0.87698 0.95375 1.21111 1.04034 0.98320 0.95292 1.20448 0.96476 0.93263 0.98826 1.21888 1.02979 0.92968 0.96778 1.24114 1.04279 0.96464 0.77965 1.86779 1.65358 1.37670 1.34581 0.92895 1.00095 1.00108 0.87547 0.87553 0.74318 0.93216 0.93353 0.88339 0.88122 0.83291 0.84606 0.84283 0.88796 0.87046 0.89243 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.18 13.29 21.45 0.28 -59.89 16 2 C -0.01 -0.57 5.46 84.65 0.46 -0.11 16 3 Si 0.98 44.39 29.54 68.60 2.03 46.41 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.54 -31.02 9.11 25.60 0.23 -30.79 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 9 C 0.04 2.27 4.26 29.85 0.13 2.40 16 10 C -0.12 -4.73 5.64 29.85 0.17 -4.56 16 11 C 0.51 19.66 7.83 87.65 0.69 20.35 16 12 O -0.59 -29.86 15.98 -3.02 -0.05 -29.91 16 13 N -0.72 -18.36 5.56 -463.05 -2.57 -20.93 16 14 C 0.12 2.93 5.66 86.38 0.49 3.42 16 15 C -0.07 -1.01 5.47 29.85 0.16 -0.85 16 16 C -0.11 -1.98 5.14 -19.83 -0.10 -2.08 16 17 C -0.08 -1.44 9.68 22.21 0.21 -1.23 16 18 C -0.15 -2.92 10.06 22.45 0.23 -2.70 16 19 C 0.08 1.64 7.04 22.70 0.16 1.80 16 20 C -0.19 -3.43 6.27 -19.52 -0.12 -3.56 16 21 C -0.07 -1.27 9.69 22.16 0.21 -1.05 16 22 C -0.11 -1.32 7.11 30.74 0.22 -1.10 16 23 C 0.05 0.53 8.01 72.57 0.58 1.11 16 24 O -0.33 -6.68 11.10 -94.99 -1.05 -7.73 16 25 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 26 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 27 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 28 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 29 H 0.11 3.65 8.14 -2.38 -0.02 3.64 16 30 H 0.42 7.13 8.47 -92.71 -0.79 6.34 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.10 1.09 8.09 -2.39 -0.02 1.07 16 34 H 0.10 1.10 8.09 -2.38 -0.02 1.08 16 35 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -82.49 349.43 2.59 -79.90 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.24 Total: 11.09 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 3.72 Total: -18.94 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -2.29 Total: -80.82 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -1.10 Total: -37.64 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -82.49 2.59 -79.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291634709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.640 kcal (2) G-P(sol) polarization free energy of solvation -82.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds