Wall clock time and date at job start Tue Mar 31 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.46941 * 2 1 4 4 C 1.35965 * 126.48307 * 265.14099 * 3 2 1 5 5 C 1.35568 * 107.06679 * 180.29394 * 4 3 2 6 6 N 1.33093 * 108.38685 * 359.73742 * 5 4 3 7 7 C 1.31609 * 109.21489 * 0.02562 * 6 5 4 8 8 C 1.47368 * 125.85333 * 180.02562 * 7 6 5 9 9 O 1.21625 * 120.00256 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99634 * 0.02562 * 8 7 6 11 11 C 1.40050 * 119.99914 * 179.97438 * 10 8 7 12 12 C 1.40427 * 125.97877 * 359.97438 * 11 10 8 13 13 C 1.35224 * 107.86759 * 179.77035 * 12 11 10 14 14 N 1.34966 * 107.86971 * 0.36573 * 13 12 11 15 15 C 1.46500 * 125.97782 * 179.89501 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71059 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31241 * 125.97632 * 179.97438 * 11 10 8 25 25 H 1.09001 * 109.46457 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47295 * 300.00190 * 1 2 3 27 27 H 1.08997 * 109.46967 * 60.00480 * 1 2 3 28 28 H 1.08998 * 109.47295 * 239.99810 * 2 1 3 29 29 H 1.08997 * 109.46967 * 119.99520 * 2 1 3 30 30 H 1.08001 * 126.46509 * 0.02562 * 4 3 2 31 31 H 1.08003 * 125.80474 * 179.71409 * 5 4 3 32 32 H 0.97003 * 120.00230 * 0.02562 * 10 8 7 33 33 H 1.08007 * 126.06680 * 359.97438 * 12 11 10 34 34 H 1.08004 * 126.06471 * 180.25502 * 13 12 11 35 35 H 1.09004 * 109.47078 * 4.71821 * 15 14 13 36 36 H 1.08993 * 109.47364 * 244.71592 * 15 14 13 37 37 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3751 2.1126 -1.0893 5 6 2.7715 3.3286 -0.6397 6 7 2.6556 3.3442 0.6861 7 6 2.1994 2.1793 1.0948 8 6 1.9339 1.7988 2.4935 9 8 1.5115 0.6879 2.7519 10 7 2.1591 2.6820 3.4864 11 6 1.9062 2.3207 4.8157 12 6 1.4190 1.0789 5.2547 13 6 1.3169 1.1262 6.6022 14 7 1.7149 2.3513 7.0050 15 6 1.7598 2.8299 8.3889 16 6 3.1489 3.3209 8.7058 17 1 3.9209 3.2809 7.9516 18 6 3.4343 3.8211 9.9585 19 7 2.4928 3.8748 10.8752 20 14 5.1560 4.4304 10.3511 21 1 5.2000 4.9209 11.7521 22 1 6.1247 3.3170 10.1857 23 1 5.5118 5.5375 9.4276 24 7 2.0831 3.0834 5.8690 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 2.3517 1.7850 -2.1181 31 1 3.1222 4.1455 -1.2530 32 1 2.4956 3.5681 3.2803 33 1 1.1730 0.2347 4.6276 34 1 0.9756 0.3261 7.2424 35 1 1.5000 2.0144 9.0639 36 1 1.0485 3.6461 8.5144 37 1 1.5987 3.5587 10.6714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291713042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:14 Heat of formation + Delta-G solvation = 109.984281 kcal Electronic energy + Delta-G solvation = -21958.986324 eV Core-core repulsion = 18546.663526 eV Total energy + Delta-G solvation = -3412.322798 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.50060 -40.71486 -39.06651 -35.60643 -34.67534 -33.65758 -31.21411 -30.54480 -29.77386 -29.40807 -26.40780 -24.66089 -23.73492 -22.75674 -21.78843 -21.09624 -20.13102 -19.46972 -17.89329 -17.19459 -16.63976 -16.40719 -16.04940 -15.33533 -14.91264 -14.81943 -14.29398 -14.12998 -14.01239 -13.78901 -13.73913 -13.20773 -12.95884 -12.47841 -12.40834 -12.26431 -11.89312 -11.65189 -11.16661 -10.81048 -10.52847 -10.44620 -10.23277 -10.14520 -10.06648 -9.81245 -9.02153 -8.84586 -8.57334 -8.24053 -7.56289 -6.57605 -4.31664 1.08816 2.07539 2.28245 2.70844 2.85413 3.13437 3.39420 3.41775 3.59741 3.67637 3.70152 4.18678 4.32559 4.42128 4.51062 4.65611 4.92564 4.99193 5.13241 5.16213 5.30545 5.39740 5.40700 5.69310 5.76833 5.91339 6.11707 6.30460 6.35815 6.47003 6.54429 6.63786 6.74193 7.25594 7.34982 7.59640 7.71730 7.80771 8.06816 8.34616 8.51169 8.61864 9.36496 10.80147 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.028248 B = 0.003240 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.999559 B = 8639.588500 C = 9355.273384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.414 5.414 4 C -0.030 4.030 5 C -0.025 4.025 6 N -0.445 5.445 7 C 0.148 3.852 8 C 0.615 3.385 9 O -0.518 6.518 10 N -0.604 5.604 11 C 0.259 3.741 12 C -0.284 4.284 13 C 0.051 3.949 14 N -0.315 5.315 15 C 0.249 3.751 16 C -0.609 4.609 17 H 0.064 0.936 18 C 0.023 3.977 19 N -0.905 5.905 20 Si 1.077 2.923 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.284 1.284 24 N -0.294 5.294 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.184 0.816 31 H 0.179 0.821 32 H 0.423 0.577 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.047 0.953 36 H 0.036 0.964 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.993 -7.619 -23.817 25.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.027 4.027 3 N -0.095 5.095 4 C -0.168 4.168 5 C -0.178 4.178 6 N -0.167 5.167 7 C -0.112 4.112 8 C 0.399 3.601 9 O -0.392 6.392 10 N -0.251 5.251 11 C 0.005 3.995 12 C -0.315 4.315 13 C -0.098 4.098 14 N -0.097 5.097 15 C 0.131 3.869 16 C -0.647 4.647 17 H 0.082 0.918 18 C -0.181 4.181 19 N -0.540 5.540 20 Si 0.903 3.097 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.211 1.211 24 N -0.125 5.125 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.130 0.870 30 H 0.201 0.799 31 H 0.196 0.804 32 H 0.261 0.739 33 H 0.179 0.821 34 H 0.186 0.814 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.888 -6.108 -21.290 22.229 hybrid contribution -1.206 -1.628 -2.305 3.069 sum -3.094 -7.736 -23.595 25.023 Atomic orbital electron populations 1.22079 0.93430 1.03517 1.03125 1.22162 0.96433 0.78609 1.05480 1.45424 1.45252 1.12878 1.05932 1.23060 1.06800 0.93933 0.92959 1.22449 1.06891 0.97633 0.90855 1.70211 1.15011 1.18555 1.12877 1.22314 1.10380 0.88672 0.89811 1.16219 0.78120 0.84134 0.81625 1.90737 1.45217 1.20431 1.82819 1.41918 1.63378 1.17682 1.02149 1.18991 1.02186 0.94184 0.84089 1.21513 1.16788 0.99476 0.93755 1.22561 1.01365 0.90265 0.95640 1.48838 1.45530 1.08530 1.06755 1.19787 0.99960 0.95844 0.71340 1.22111 0.94917 1.46544 1.01119 0.91768 1.25926 1.05905 0.94317 0.91978 1.70855 1.03476 1.43885 1.35809 0.83422 0.73335 0.76614 0.76286 1.20531 1.21231 1.21056 1.77416 1.25096 1.19353 0.90631 0.90238 0.91132 0.92317 0.88924 0.87023 0.79934 0.80396 0.73946 0.82078 0.81382 0.93545 0.94660 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 10.23 37.16 0.38 -0.86 16 2 C 0.09 0.75 6.18 -4.04 -0.02 0.73 16 3 N -0.41 -4.27 2.77 -114.43 -0.32 -4.58 16 4 C -0.03 -0.24 11.56 -16.67 -0.19 -0.43 16 5 C -0.02 -0.25 11.85 -17.96 -0.21 -0.46 16 6 N -0.44 -5.96 10.88 -11.27 -0.12 -6.08 16 7 C 0.15 2.00 7.79 -154.53 -1.20 0.79 16 8 C 0.62 9.67 7.78 -12.54 -0.10 9.57 16 9 O -0.52 -8.48 11.62 5.26 0.06 -8.41 16 10 N -0.60 -10.42 5.44 -12.13 -0.07 -10.49 16 11 C 0.26 5.33 8.10 -154.47 -1.25 4.08 16 12 C -0.28 -5.54 9.60 -39.83 -0.38 -5.92 16 13 C 0.05 1.02 11.43 -17.25 -0.20 0.82 16 14 N -0.31 -7.39 3.67 -62.56 -0.23 -7.62 16 15 C 0.25 6.31 5.57 -5.19 -0.03 6.28 16 16 C -0.61 -17.25 9.24 -34.44 -0.32 -17.57 16 17 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 18 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 19 N -0.90 -26.45 13.65 55.43 0.76 -25.69 16 20 Si 1.08 25.13 29.90 -169.99 -5.08 20.05 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 N -0.29 -6.96 12.42 31.42 0.39 -6.57 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.11 1.06 6.65 -51.93 -0.35 0.72 16 30 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.18 1.22 8.06 -52.48 -0.42 0.79 16 32 H 0.42 6.80 8.50 -40.82 -0.35 6.45 16 33 H 0.16 2.94 5.91 -52.48 -0.31 2.63 16 34 H 0.17 2.67 8.06 -52.48 -0.42 2.25 16 35 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 36 H 0.04 0.93 8.00 -51.93 -0.42 0.52 16 37 H 0.27 7.61 7.22 -40.82 -0.29 7.32 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -33.86 324.94 -7.61 -41.48 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.27 Total: 5.43 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.63 Total: -2.40 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.41 Total: -61.03 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.06 Total: -8.41 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.86 -7.61 -41.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291713042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.459 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds