Wall clock time and date at job start Tue Mar 31 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.46941 * 2 1 4 4 C 1.35965 * 126.48307 * 265.14099 * 3 2 1 5 5 C 1.35568 * 107.06679 * 180.29394 * 4 3 2 6 6 N 1.33093 * 108.38685 * 359.73742 * 5 4 3 7 7 C 1.31609 * 109.21489 * 0.02562 * 6 5 4 8 8 C 1.47368 * 125.85333 * 180.02562 * 7 6 5 9 9 O 1.21625 * 120.00256 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99634 * 0.02562 * 8 7 6 11 11 C 1.40050 * 119.99914 * 179.97438 * 10 8 7 12 12 C 1.40427 * 125.97877 * 359.97438 * 11 10 8 13 13 C 1.35224 * 107.86759 * 179.77035 * 12 11 10 14 14 N 1.34966 * 107.86971 * 0.36573 * 13 12 11 15 15 C 1.46500 * 125.97782 * 179.89501 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71059 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31241 * 125.97632 * 179.97438 * 11 10 8 25 25 H 1.09001 * 109.46457 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47295 * 300.00190 * 1 2 3 27 27 H 1.08997 * 109.46967 * 60.00480 * 1 2 3 28 28 H 1.08998 * 109.47295 * 239.99810 * 2 1 3 29 29 H 1.08997 * 109.46967 * 119.99520 * 2 1 3 30 30 H 1.08001 * 126.46509 * 0.02562 * 4 3 2 31 31 H 1.08003 * 125.80474 * 179.71409 * 5 4 3 32 32 H 0.97003 * 120.00230 * 0.02562 * 10 8 7 33 33 H 1.08007 * 126.06680 * 359.97438 * 12 11 10 34 34 H 1.08004 * 126.06471 * 180.25502 * 13 12 11 35 35 H 1.09004 * 109.47078 * 4.71821 * 15 14 13 36 36 H 1.08993 * 109.47364 * 244.71592 * 15 14 13 37 37 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3751 2.1126 -1.0893 5 6 2.7715 3.3286 -0.6397 6 7 2.6556 3.3442 0.6861 7 6 2.1994 2.1793 1.0948 8 6 1.9339 1.7988 2.4935 9 8 1.5115 0.6879 2.7519 10 7 2.1591 2.6820 3.4864 11 6 1.9062 2.3207 4.8157 12 6 1.4190 1.0789 5.2547 13 6 1.3169 1.1262 6.6022 14 7 1.7149 2.3513 7.0050 15 6 1.7598 2.8299 8.3889 16 6 3.1489 3.3209 8.7058 17 1 3.9209 3.2809 7.9516 18 6 3.4343 3.8211 9.9585 19 7 2.4928 3.8748 10.8752 20 14 5.1560 4.4304 10.3511 21 1 5.2000 4.9209 11.7521 22 1 6.1247 3.3170 10.1857 23 1 5.5118 5.5375 9.4276 24 7 2.0831 3.0834 5.8690 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 2.3517 1.7850 -2.1181 31 1 3.1222 4.1455 -1.2530 32 1 2.4956 3.5681 3.2803 33 1 1.1730 0.2347 4.6276 34 1 0.9756 0.3261 7.2424 35 1 1.5000 2.0144 9.0639 36 1 1.0485 3.6461 8.5144 37 1 1.5987 3.5587 10.6714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291713042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:13 Heat of formation + Delta-G solvation = 88.080295 kcal Electronic energy + Delta-G solvation = -21959.936152 eV Core-core repulsion = 18546.663526 eV Total energy + Delta-G solvation = -3413.272626 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.33570 -42.28770 -40.38714 -36.70867 -36.01895 -35.40597 -32.87844 -31.38790 -31.07557 -30.66557 -28.24624 -25.84932 -24.94225 -24.22794 -22.77883 -22.40773 -21.51508 -20.74603 -19.26682 -18.86634 -18.15196 -17.44998 -17.13442 -16.78867 -16.24311 -15.71414 -15.66728 -15.49445 -15.39261 -15.04291 -14.73694 -14.50750 -14.18550 -13.96228 -13.74636 -13.61602 -13.24924 -12.99672 -12.63174 -12.32449 -12.10763 -11.95590 -11.73046 -11.34306 -11.16641 -11.02809 -10.87595 -10.70196 -9.91395 -9.64491 -9.23348 -8.79046 -6.56844 0.08902 0.95473 1.02863 1.46487 1.50935 1.57261 1.69788 1.79389 1.92754 2.28170 2.38021 2.48355 3.00344 3.09269 3.71494 3.77863 3.85833 4.05656 4.10631 4.35638 4.39092 4.44670 4.53138 4.63895 4.72395 4.76186 4.78013 4.80367 4.98429 5.16603 5.22744 5.53309 5.61795 5.73195 5.87590 5.89786 6.02492 6.25172 6.40351 6.64864 6.89272 6.91030 7.18518 8.57709 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.028248 B = 0.003240 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.999559 B = 8639.588500 C = 9355.273384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.090 3.910 3 N -0.409 5.409 4 C 0.004 3.996 5 C -0.045 4.045 6 N -0.470 5.470 7 C 0.104 3.896 8 C 0.616 3.384 9 O -0.529 6.529 10 N -0.609 5.609 11 C 0.267 3.733 12 C -0.286 4.286 13 C 0.059 3.941 14 N -0.340 5.340 15 C 0.259 3.741 16 C -0.624 4.624 17 H 0.044 0.956 18 C -0.018 4.018 19 N -0.923 5.923 20 Si 1.119 2.881 21 H -0.274 1.274 22 H -0.270 1.270 23 H -0.277 1.277 24 N -0.344 5.344 25 H 0.097 0.903 26 H 0.035 0.965 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.091 0.909 30 H 0.235 0.765 31 H 0.206 0.794 32 H 0.425 0.575 33 H 0.176 0.824 34 H 0.207 0.793 35 H 0.058 0.942 36 H 0.017 0.983 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.493 -8.841 -26.677 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.030 4.030 3 N -0.091 5.091 4 C -0.135 4.135 5 C -0.198 4.198 6 N -0.193 5.193 7 C -0.152 4.152 8 C 0.403 3.597 9 O -0.404 6.404 10 N -0.257 5.257 11 C 0.012 3.988 12 C -0.317 4.317 13 C -0.089 4.089 14 N -0.122 5.122 15 C 0.140 3.860 16 C -0.662 4.662 17 H 0.062 0.938 18 C -0.217 4.217 19 N -0.559 5.559 20 Si 0.940 3.060 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.202 1.202 24 N -0.175 5.175 25 H 0.116 0.884 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.109 0.891 30 H 0.251 0.749 31 H 0.222 0.778 32 H 0.263 0.737 33 H 0.193 0.807 34 H 0.224 0.776 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.416 -7.367 -24.165 25.303 hybrid contribution -1.411 -1.301 -1.688 2.555 sum -2.827 -8.668 -25.853 27.414 Atomic orbital electron populations 1.22039 0.93200 1.04365 1.01984 1.22374 0.96569 0.77542 1.06548 1.45674 1.44344 1.13489 1.05551 1.23908 1.02823 0.92617 0.94157 1.23091 1.07389 0.99536 0.89831 1.70136 1.15120 1.18909 1.15088 1.21732 1.14177 0.90020 0.89317 1.16568 0.77147 0.83619 0.82402 1.90699 1.45614 1.20748 1.83323 1.42056 1.64047 1.18328 1.01251 1.19328 1.00384 0.94182 0.84890 1.21746 1.16607 0.99460 0.93863 1.23238 0.99624 0.89721 0.96339 1.48618 1.47711 1.09856 1.06041 1.19455 0.98029 0.95580 0.72971 1.22301 0.95901 1.47079 1.00897 0.93752 1.27259 1.08772 0.93850 0.91857 1.70946 1.03664 1.44966 1.36284 0.82891 0.69756 0.76898 0.76479 1.19837 1.19569 1.20243 1.77323 1.27648 1.21021 0.91512 0.88448 0.94619 0.90972 0.84722 0.89079 0.74906 0.77767 0.73683 0.80671 0.77619 0.92426 0.96507 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 10.23 71.98 0.74 -1.32 16 2 C 0.09 1.19 6.18 86.38 0.53 1.73 16 3 N -0.41 -7.47 2.77 -515.95 -1.43 -8.90 16 4 C 0.00 0.05 11.56 83.43 0.96 1.01 16 5 C -0.05 -0.77 11.85 83.88 0.99 0.22 16 6 N -0.47 -12.26 10.88 -189.56 -2.06 -14.32 16 7 C 0.10 2.77 7.79 136.26 1.06 3.83 16 8 C 0.62 19.73 7.78 86.65 0.67 20.40 16 9 O -0.53 -17.47 11.62 -4.11 -0.05 -17.52 16 10 N -0.61 -21.74 5.44 -310.53 -1.69 -23.43 16 11 C 0.27 11.28 8.10 133.36 1.08 12.36 16 12 C -0.29 -11.17 9.60 22.11 0.21 -10.95 16 13 C 0.06 2.32 11.43 83.52 0.95 3.27 16 14 N -0.34 -16.34 3.67 -351.85 -1.29 -17.63 16 15 C 0.26 13.51 5.57 85.64 0.48 13.99 16 16 C -0.62 -36.18 9.24 25.60 0.24 -35.95 16 17 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 18 C -0.02 -1.00 5.46 84.65 0.46 -0.54 16 19 N -0.92 -54.48 13.65 21.45 0.29 -54.19 16 20 Si 1.12 50.61 29.90 68.60 2.05 52.66 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 N -0.34 -16.89 12.42 -54.50 -0.68 -17.56 16 25 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.03 0.72 7.84 -2.39 -0.02 0.70 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.13 0.67 8.13 -2.39 -0.02 0.65 16 29 H 0.09 1.63 6.65 -2.39 -0.02 1.61 16 30 H 0.23 0.33 8.06 -2.91 -0.02 0.30 16 31 H 0.21 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.43 14.41 8.50 -92.71 -0.79 13.62 16 33 H 0.18 6.30 5.91 -2.91 -0.02 6.29 16 34 H 0.21 6.19 8.06 -2.91 -0.02 6.17 16 35 H 0.06 2.85 7.94 -2.39 -0.02 2.83 16 36 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 37 H 0.26 15.22 7.22 -92.71 -0.67 14.55 16 Total: -1.00 -76.21 324.94 3.95 -72.26 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.42 Total: 20.58 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 8.39 Total: 8.05 kcal Atomic # 7 Polarization: -129.18 SS G_CDS: -6.86 Total: -136.03 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.05 Total: -17.52 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.05 Total: 52.66 kcal Total: -76.21 3.95 -72.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291713042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.340 kcal (2) G-P(sol) polarization free energy of solvation -76.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds