Wall clock time and date at job start Tue Mar 31 2020 06:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99791 * 2 1 4 4 H 1.48500 * 109.46948 * 269.99930 * 3 2 1 5 5 H 1.48501 * 109.47200 * 29.99985 * 3 2 1 6 6 H 1.48503 * 109.47292 * 149.99994 * 3 2 1 7 7 C 1.37870 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99935 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00349 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47530 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46929 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00631 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99542 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00091 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47372 * 185.18550 * 14 13 11 16 16 H 1.09004 * 109.39923 * 303.84058 * 15 14 13 17 17 C 1.53069 * 109.44151 * 63.74257 * 15 14 13 18 18 C 1.53405 * 108.30039 * 168.34785 * 17 15 14 19 19 O 1.42820 * 108.40214 * 295.34557 * 18 17 15 20 20 C 1.35840 * 117.87746 * 49.15422 * 19 18 17 21 21 C 1.39149 * 118.50984 * 162.94634 * 20 19 18 22 22 C 1.37965 * 120.21313 * 179.48206 * 21 20 19 23 23 C 1.38287 * 119.96362 * 0.02562 * 22 21 20 24 24 C 1.38107 * 119.98064 * 0.09483 * 23 22 21 25 25 C 1.38373 * 121.79757 * 342.63032 * 20 19 18 26 26 H 0.97004 * 119.99930 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47469 * 59.99807 * 9 7 2 28 28 H 1.09007 * 109.47171 * 300.00021 * 9 7 2 29 29 H 1.09000 * 109.46561 * 60.00220 * 10 9 7 30 30 H 1.08998 * 109.47237 * 300.00142 * 10 9 7 31 31 H 0.96999 * 120.00396 * 359.97438 * 13 11 10 32 32 H 1.09001 * 109.47477 * 65.17673 * 14 13 11 33 33 H 1.08999 * 109.47094 * 305.18554 * 14 13 11 34 34 H 1.09000 * 109.69759 * 288.04722 * 17 15 14 35 35 H 1.08997 * 109.69858 * 48.60665 * 17 15 14 36 36 H 1.09005 * 109.67403 * 55.07114 * 18 17 15 37 37 H 1.08989 * 109.68038 * 175.57433 * 18 17 15 38 38 H 1.08005 * 119.89105 * 359.49915 * 21 20 19 39 39 H 1.07998 * 120.02177 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.01332 * 179.82237 * 23 22 21 41 41 H 1.08008 * 119.84333 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5286 -2.6364 0.0022 12 8 6.1350 -1.5860 0.0018 13 7 6.2025 -3.8036 0.0026 14 6 7.6675 -3.8036 0.0032 15 6 8.1776 -5.2402 -0.1268 16 1 7.7582 -5.8473 0.6755 17 6 7.7459 -5.8137 -1.4787 18 6 8.5051 -7.1266 -1.7095 19 8 9.8978 -6.8291 -1.8172 20 6 10.4541 -6.0388 -0.8627 21 6 11.8397 -6.0271 -0.7346 22 6 12.4424 -5.2293 0.2160 23 6 11.6684 -4.4385 1.0454 24 6 10.2928 -4.4494 0.9228 25 6 9.6821 -5.2492 -0.0288 26 1 -0.4850 0.8401 0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8753 -0.6803 -0.8889 29 1 3.6586 -3.1508 -0.8875 30 1 3.6580 -3.1498 0.8924 31 1 5.7176 -4.6437 0.0033 32 1 8.0306 -3.3720 0.9359 33 1 8.0311 -3.2116 -0.8367 34 1 6.6730 -6.0064 -1.4704 35 1 7.9858 -5.1056 -2.2718 36 1 8.3375 -7.8001 -0.8690 37 1 8.1570 -7.5950 -2.6301 38 1 12.4452 -6.6445 -1.3817 39 1 13.5180 -5.2223 0.3124 40 1 12.1392 -3.8158 1.7917 41 1 9.6904 -3.8311 1.5720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291744064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:34 Heat of formation + Delta-G solvation = -67.155469 kcal Electronic energy + Delta-G solvation = -22145.279181 eV Core-core repulsion = 18796.522619 eV Total energy + Delta-G solvation = -3348.756562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14986 -39.26431 -37.78168 -36.29100 -33.48630 -33.25470 -31.29532 -31.00735 -30.47838 -28.08655 -25.89624 -24.39897 -23.55896 -22.20891 -21.15485 -20.29293 -19.66800 -18.13577 -17.27894 -16.87301 -16.56318 -15.90837 -15.66694 -15.41528 -15.17767 -14.57748 -14.26643 -14.08587 -14.04949 -13.59581 -13.39188 -13.21934 -12.97481 -12.59504 -12.54085 -12.12746 -11.97237 -11.62852 -11.42075 -11.27885 -11.06608 -10.96489 -10.65188 -10.17319 -10.05510 -9.79045 -9.28793 -9.18720 -9.08801 -8.90727 -8.51238 -8.44912 -6.03702 -4.02513 1.00721 1.14769 2.97022 3.10436 3.36170 3.37759 3.44314 3.47807 3.55306 4.21643 4.25642 4.36734 4.49178 4.50529 4.77670 4.81274 4.92013 4.94840 5.11510 5.15304 5.19180 5.23973 5.31855 5.40174 5.53900 5.57996 5.66099 5.78472 5.87368 6.00114 6.06305 6.08193 6.17775 6.25788 6.47688 6.57262 6.68096 7.14040 7.35756 7.42729 7.72253 7.78920 8.49091 8.63381 8.99206 9.59439 11.09088 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030386 B = 0.002889 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.261904 B = 9689.524100 C =10347.841090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.510 3.490 12 O -0.539 6.539 13 N -0.742 5.742 14 C 0.129 3.871 15 C -0.056 4.056 16 H 0.091 0.909 17 C -0.157 4.157 18 C 0.062 3.938 19 O -0.317 6.317 20 C 0.135 3.865 21 C -0.152 4.152 22 C -0.087 4.087 23 C -0.152 4.152 24 C -0.081 4.081 25 C -0.152 4.152 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.019 0.981 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.398 0.602 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.053 -17.038 -0.362 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.162 4.162 11 C 0.298 3.702 12 O -0.415 6.415 13 N -0.397 5.397 14 C 0.005 3.995 15 C -0.074 4.074 16 H 0.109 0.891 17 C -0.194 4.194 18 C -0.013 4.013 19 O -0.231 6.231 20 C 0.090 3.910 21 C -0.171 4.171 22 C -0.105 4.105 23 C -0.170 4.170 24 C -0.099 4.099 25 C -0.154 4.154 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.232 0.768 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 23.417 -16.221 -0.529 28.491 hybrid contribution -0.072 0.517 0.112 0.534 sum 23.345 -15.704 -0.416 28.139 Atomic orbital electron populations 1.69914 1.06294 1.26979 1.51073 1.24975 0.94714 0.99250 0.94324 0.86793 0.80616 0.83374 0.78759 1.20238 1.21440 1.18529 1.21109 0.89281 0.94553 1.51349 0.90948 1.19370 0.96399 0.90228 0.97664 1.21667 0.87906 1.03299 1.03306 1.21549 0.91584 0.82733 0.74326 1.90660 1.70835 1.31468 1.48557 1.46166 1.06293 1.09300 1.77916 1.21322 0.80987 0.94628 1.02576 1.20241 0.91435 0.97306 0.98424 0.89143 1.22333 1.01590 0.97802 0.97715 1.22991 0.78416 0.96441 1.03437 1.85989 1.25700 1.64987 1.46434 1.18685 0.92151 0.91123 0.89003 1.20592 0.91747 1.03230 1.01490 1.20948 0.99888 0.95204 0.94484 1.21058 0.93716 1.01201 1.01044 1.21053 0.94943 0.97120 0.96815 1.19611 0.94850 1.00964 0.99942 0.92713 0.95839 0.96286 0.89644 0.89590 0.76838 0.91452 0.91191 0.89261 0.89905 0.91675 0.87262 0.85295 0.85448 0.85751 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.65 27.47 -169.99 -4.67 17.98 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 7 C -0.53 -15.00 9.66 -34.45 -0.33 -15.33 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.32 5.64 -27.88 -0.16 -2.47 16 11 C 0.51 9.09 7.83 -10.98 -0.09 9.00 16 12 O -0.54 -11.94 15.98 5.56 0.09 -11.85 16 13 N -0.74 -9.35 5.30 -60.30 -0.32 -9.67 16 14 C 0.13 1.49 4.70 -4.04 -0.02 1.48 16 15 C -0.06 -0.49 2.41 -91.70 -0.22 -0.72 16 16 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 17 C -0.16 -1.23 5.21 -26.49 -0.14 -1.37 16 18 C 0.06 0.45 7.03 37.37 0.26 0.71 16 19 O -0.32 -3.20 10.27 -19.24 -0.20 -3.40 16 20 C 0.14 1.41 6.47 -39.19 -0.25 1.15 16 21 C -0.15 -1.41 9.94 -39.34 -0.39 -1.80 16 22 C -0.09 -0.71 10.04 -39.66 -0.40 -1.11 16 23 C -0.15 -1.32 10.04 -39.61 -0.40 -1.71 16 24 C -0.08 -0.78 9.09 -39.53 -0.36 -1.14 16 25 C -0.15 -1.53 5.43 -104.44 -0.57 -2.09 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 28 H 0.02 0.49 7.53 -51.92 -0.39 0.10 16 29 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.40 3.74 7.87 -40.82 -0.32 3.42 16 32 H 0.07 0.81 6.33 -51.93 -0.33 0.48 16 33 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 34 H 0.09 0.56 7.57 -51.93 -0.39 0.17 16 35 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.13 1.15 6.39 -52.48 -0.34 0.81 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -35.03 336.25 -8.46 -43.49 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.95 Total: -0.84 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -3.25 Total: -13.53 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.45 Total: -36.91 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.11 Total: -15.25 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.03 -8.46 -43.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291744064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.667 kcal (2) G-P(sol) polarization free energy of solvation -35.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds