Wall clock time and date at job start Tue Mar 31 2020 06:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99791 * 2 1 4 4 H 1.48500 * 109.46948 * 269.99930 * 3 2 1 5 5 H 1.48501 * 109.47200 * 29.99985 * 3 2 1 6 6 H 1.48503 * 109.47292 * 149.99994 * 3 2 1 7 7 C 1.37870 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99935 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00349 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47530 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46929 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00631 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99542 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00091 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47372 * 185.18550 * 14 13 11 16 16 H 1.09004 * 109.39923 * 303.84058 * 15 14 13 17 17 C 1.53069 * 109.44151 * 63.74257 * 15 14 13 18 18 C 1.53405 * 108.30039 * 168.34785 * 17 15 14 19 19 O 1.42820 * 108.40214 * 295.34557 * 18 17 15 20 20 C 1.35840 * 117.87746 * 49.15422 * 19 18 17 21 21 C 1.39149 * 118.50984 * 162.94634 * 20 19 18 22 22 C 1.37965 * 120.21313 * 179.48206 * 21 20 19 23 23 C 1.38287 * 119.96362 * 0.02562 * 22 21 20 24 24 C 1.38107 * 119.98064 * 0.09483 * 23 22 21 25 25 C 1.38373 * 121.79757 * 342.63032 * 20 19 18 26 26 H 0.97004 * 119.99930 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47469 * 59.99807 * 9 7 2 28 28 H 1.09007 * 109.47171 * 300.00021 * 9 7 2 29 29 H 1.09000 * 109.46561 * 60.00220 * 10 9 7 30 30 H 1.08998 * 109.47237 * 300.00142 * 10 9 7 31 31 H 0.96999 * 120.00396 * 359.97438 * 13 11 10 32 32 H 1.09001 * 109.47477 * 65.17673 * 14 13 11 33 33 H 1.08999 * 109.47094 * 305.18554 * 14 13 11 34 34 H 1.09000 * 109.69759 * 288.04722 * 17 15 14 35 35 H 1.08997 * 109.69858 * 48.60665 * 17 15 14 36 36 H 1.09005 * 109.67403 * 55.07114 * 18 17 15 37 37 H 1.08989 * 109.68038 * 175.57433 * 18 17 15 38 38 H 1.08005 * 119.89105 * 359.49915 * 21 20 19 39 39 H 1.07998 * 120.02177 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.01332 * 179.82237 * 23 22 21 41 41 H 1.08008 * 119.84333 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5286 -2.6364 0.0022 12 8 6.1350 -1.5860 0.0018 13 7 6.2025 -3.8036 0.0026 14 6 7.6675 -3.8036 0.0032 15 6 8.1776 -5.2402 -0.1268 16 1 7.7582 -5.8473 0.6755 17 6 7.7459 -5.8137 -1.4787 18 6 8.5051 -7.1266 -1.7095 19 8 9.8978 -6.8291 -1.8172 20 6 10.4541 -6.0388 -0.8627 21 6 11.8397 -6.0271 -0.7346 22 6 12.4424 -5.2293 0.2160 23 6 11.6684 -4.4385 1.0454 24 6 10.2928 -4.4494 0.9228 25 6 9.6821 -5.2492 -0.0288 26 1 -0.4850 0.8401 0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8753 -0.6803 -0.8889 29 1 3.6586 -3.1508 -0.8875 30 1 3.6580 -3.1498 0.8924 31 1 5.7176 -4.6437 0.0033 32 1 8.0306 -3.3720 0.9359 33 1 8.0311 -3.2116 -0.8367 34 1 6.6730 -6.0064 -1.4704 35 1 7.9858 -5.1056 -2.2718 36 1 8.3375 -7.8001 -0.8690 37 1 8.1570 -7.5950 -2.6301 38 1 12.4452 -6.6445 -1.3817 39 1 13.5180 -5.2223 0.3124 40 1 12.1392 -3.8158 1.7917 41 1 9.6904 -3.8311 1.5720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291744064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:33 Heat of formation + Delta-G solvation = -90.242051 kcal Electronic energy + Delta-G solvation = -22146.280290 eV Core-core repulsion = 18796.522619 eV Total energy + Delta-G solvation = -3349.757671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85342 -40.62231 -38.42968 -37.26522 -35.53663 -34.33859 -33.24411 -31.64632 -31.15802 -29.27119 -27.48504 -25.11492 -24.39685 -23.29243 -22.58945 -21.34833 -20.76569 -19.23907 -18.78365 -17.77099 -17.39326 -17.35246 -16.75805 -16.48445 -16.19761 -15.98041 -15.52597 -15.02376 -14.95620 -14.69466 -14.56903 -14.29833 -14.18743 -14.10813 -13.52421 -13.38852 -13.10085 -12.88146 -12.62537 -12.35360 -12.09892 -11.96847 -11.92254 -11.76661 -11.68222 -11.39703 -11.35180 -10.79363 -10.78197 -10.08999 -9.79021 -9.13275 -8.31654 -6.34279 0.32881 0.45846 1.32841 1.34975 1.49892 1.68773 2.20141 2.34764 2.38095 2.78041 3.04185 3.51095 3.56185 3.67988 3.83613 4.02279 4.16695 4.22622 4.24613 4.30687 4.39303 4.46606 4.51480 4.51867 4.56157 4.63743 4.80190 4.81709 4.96783 5.01443 5.06646 5.13818 5.31384 5.34852 5.45211 5.46244 5.49741 5.59794 5.61577 5.85849 6.23513 6.48155 6.58272 6.72384 7.30755 7.31439 8.83925 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030386 B = 0.002889 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.261904 B = 9689.524100 C =10347.841090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.004 3.996 10 C -0.116 4.116 11 C 0.514 3.486 12 O -0.588 6.588 13 N -0.716 5.716 14 C 0.133 3.867 15 C -0.046 4.046 16 H 0.109 0.891 17 C -0.155 4.155 18 C 0.058 3.942 19 O -0.333 6.333 20 C 0.119 3.881 21 C -0.164 4.164 22 C -0.087 4.087 23 C -0.159 4.159 24 C -0.096 4.096 25 C -0.166 4.166 26 H 0.267 0.733 27 H 0.009 0.991 28 H 0.007 0.993 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.417 0.583 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.153 0.847 40 H 0.142 0.858 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.459 -18.214 -0.210 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.762 3.238 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.070 0.930 9 C -0.034 4.034 10 C -0.156 4.156 11 C 0.302 3.698 12 O -0.468 6.468 13 N -0.369 5.369 14 C 0.009 3.991 15 C -0.064 4.064 16 H 0.127 0.873 17 C -0.193 4.193 18 C -0.016 4.016 19 O -0.247 6.247 20 C 0.074 3.926 21 C -0.183 4.183 22 C -0.104 4.104 23 C -0.177 4.177 24 C -0.114 4.114 25 C -0.167 4.167 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.025 0.975 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.255 0.745 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.171 0.829 40 H 0.160 0.840 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 24.826 -17.464 -0.379 30.356 hybrid contribution -0.487 0.787 0.064 0.928 sum 24.339 -16.677 -0.315 29.506 Atomic orbital electron populations 1.70023 1.07739 1.28067 1.52579 1.25795 0.95486 1.02812 0.94349 0.85845 0.79232 0.79629 0.79097 1.19457 1.20373 1.18638 1.21435 0.91231 0.93734 1.50164 0.92980 1.19232 0.93937 0.93973 0.96290 1.21496 0.89038 0.99793 1.05229 1.21225 0.91061 0.83312 0.74170 1.90649 1.71447 1.33451 1.51259 1.45843 1.06905 1.08661 1.75526 1.21335 0.79779 0.96412 1.01585 1.20176 0.91001 0.95469 0.99745 0.87342 1.22335 1.02868 0.97738 0.96334 1.23215 0.77065 0.96233 1.05077 1.85965 1.27150 1.65012 1.46602 1.18916 0.92778 0.91655 0.89275 1.20885 0.91726 1.03664 1.02015 1.21277 1.01238 0.94276 0.93640 1.21354 0.93541 1.01355 1.01451 1.21225 0.95683 0.97423 0.97089 1.19737 0.95364 1.01383 1.00232 0.92393 0.97272 0.97459 0.87728 0.87718 0.74524 0.91760 0.93220 0.87287 0.91730 0.90348 0.85351 0.84278 0.82912 0.84037 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.96 13.96 21.45 0.30 -58.66 16 2 C 0.01 0.79 5.47 84.65 0.46 1.25 16 3 Si 0.94 46.87 27.47 68.60 1.88 48.76 16 4 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 6 H -0.26 -13.05 6.54 99.48 0.65 -12.40 16 7 C -0.53 -30.24 9.66 25.60 0.25 -29.99 16 8 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 9 C 0.00 0.18 3.33 29.85 0.10 0.28 16 10 C -0.12 -4.22 5.64 29.85 0.17 -4.05 16 11 C 0.51 17.66 7.83 87.66 0.69 18.34 16 12 O -0.59 -25.89 15.98 -3.03 -0.05 -25.94 16 13 N -0.72 -16.54 5.30 -463.06 -2.45 -18.99 16 14 C 0.13 2.92 4.70 86.38 0.41 3.33 16 15 C -0.05 -0.73 2.41 -11.50 -0.03 -0.76 16 16 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 17 C -0.16 -2.13 5.21 30.75 0.16 -1.97 16 18 C 0.06 0.72 7.03 72.12 0.51 1.23 16 19 O -0.33 -6.31 10.27 -91.76 -0.94 -7.26 16 20 C 0.12 2.35 6.47 22.52 0.15 2.50 16 21 C -0.16 -2.86 9.94 22.42 0.22 -2.63 16 22 C -0.09 -1.27 10.04 22.22 0.22 -1.05 16 23 C -0.16 -2.53 10.04 22.25 0.22 -2.31 16 24 C -0.10 -1.77 9.09 22.30 0.20 -1.57 16 25 C -0.17 -3.15 5.43 -19.75 -0.11 -3.26 16 26 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.01 0.46 7.16 -2.38 -0.02 0.45 16 28 H 0.01 0.36 7.53 -2.38 -0.02 0.34 16 29 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 30 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 31 H 0.42 6.50 7.87 -92.71 -0.73 5.77 16 32 H 0.06 1.50 6.33 -2.39 -0.02 1.48 16 33 H 0.05 1.33 8.12 -2.39 -0.02 1.31 16 34 H 0.11 1.03 7.57 -2.39 -0.02 1.01 16 35 H 0.06 1.14 8.09 -2.39 -0.02 1.12 16 36 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 39 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 40 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.13 2.24 6.39 -2.91 -0.02 2.22 16 Total: -1.00 -76.22 336.25 2.61 -73.62 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.25 Total: 9.14 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 3.62 Total: -20.66 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -2.15 Total: -77.65 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.99 Total: -33.20 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.88 Total: 48.76 kcal Total: -76.22 2.61 -73.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291744064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.627 kcal (2) G-P(sol) polarization free energy of solvation -76.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds