Wall clock time and date at job start Tue Mar 31 2020 06:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99732 * 2 1 4 4 H 1.48500 * 109.47134 * 269.99350 * 3 2 1 5 5 H 1.48500 * 109.47466 * 30.00080 * 3 2 1 6 6 H 1.48510 * 109.46872 * 149.99990 * 3 2 1 7 7 C 1.37875 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99993 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00120 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47309 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47236 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99997 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99938 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99683 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.73390 * 34.49465 * 14 13 11 16 16 C 1.52896 * 109.60467 * 274.08724 * 14 13 11 17 17 C 1.52157 * 110.76759 * 323.44130 * 16 14 13 18 18 C 1.51429 * 113.45384 * 292.57449 * 17 16 14 19 19 O 1.43116 * 110.98852 * 65.57191 * 18 17 16 20 20 C 1.36205 * 115.62487 * 273.14034 * 19 18 17 21 21 C 1.38879 * 119.84506 * 251.08408 * 20 19 18 22 22 C 1.38181 * 119.65557 * 178.18343 * 21 20 19 23 23 C 1.38290 * 120.20662 * 359.97438 * 22 21 20 24 24 C 1.38378 * 120.09778 * 0.36734 * 23 22 21 25 25 C 1.37935 * 120.23873 * 69.98018 * 20 19 18 26 26 H 0.96995 * 120.00300 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46931 * 60.00494 * 9 7 2 28 28 H 1.08998 * 109.47291 * 300.00436 * 9 7 2 29 29 H 1.08994 * 109.47530 * 59.99636 * 10 9 7 30 30 H 1.09008 * 109.46750 * 299.99889 * 10 9 7 31 31 H 0.97004 * 119.99880 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.21963 * 203.10761 * 16 14 13 33 33 H 1.08999 * 109.18188 * 83.74993 * 16 14 13 34 34 H 1.09006 * 108.68655 * 171.55089 * 17 16 14 35 35 H 1.08995 * 108.68603 * 53.59911 * 17 16 14 36 36 H 1.09003 * 109.17253 * 305.18751 * 18 17 16 37 37 H 1.08990 * 109.13091 * 185.94095 * 18 17 16 38 38 H 1.07996 * 120.17260 * 358.17650 * 21 20 19 39 39 H 1.07998 * 119.89765 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.95210 * 180.34720 * 23 22 21 41 41 H 1.08004 * 120.17415 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5286 -2.6365 0.0022 12 8 6.1349 -1.5861 0.0026 13 7 6.2025 -3.8037 0.0028 14 6 7.6674 -3.8036 0.0035 15 1 8.0352 -2.9578 0.5844 16 6 8.1810 -3.7013 -1.4330 17 6 7.2860 -4.4834 -2.3830 18 6 7.3406 -5.9811 -2.1668 19 8 6.8059 -6.3342 -0.8871 20 6 7.6889 -6.3022 0.1495 21 6 8.1175 -7.4892 0.7292 22 6 9.0420 -7.4540 1.7556 23 6 9.5387 -6.2435 2.2034 24 6 9.1057 -5.0609 1.6300 25 6 8.1758 -5.0967 0.6102 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6800 0.8912 28 1 3.8752 -0.6803 -0.8888 29 1 3.6586 -3.1502 -0.8891 30 1 3.6579 -3.1505 0.8908 31 1 5.7174 -4.6437 0.0029 32 1 9.1932 -4.1027 -1.4816 33 1 8.1957 -2.6539 -1.7344 34 1 7.5902 -4.2670 -3.4071 35 1 6.2574 -4.1485 -2.2489 36 1 8.3770 -6.3138 -2.2258 37 1 6.7610 -6.4759 -2.9460 38 1 7.7303 -8.4348 0.3797 39 1 9.3778 -8.3746 2.2095 40 1 10.2653 -6.2211 3.0021 41 1 9.4924 -4.1148 1.9791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291758388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:38 Heat of formation + Delta-G solvation = -58.593137 kcal Electronic energy + Delta-G solvation = -23102.228399 eV Core-core repulsion = 19753.843128 eV Total energy + Delta-G solvation = -3348.385271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.11146 -39.01048 -37.71927 -35.80233 -33.42613 -32.86115 -31.70243 -31.04997 -30.39650 -27.62480 -26.10478 -24.83650 -23.07731 -21.62727 -21.47116 -20.16619 -19.49277 -18.18442 -17.32180 -16.67488 -16.30519 -15.77266 -15.41213 -15.27745 -15.17143 -14.64112 -14.11467 -14.04792 -13.92720 -13.54192 -13.30012 -12.90604 -12.56433 -12.48474 -12.43694 -12.28468 -11.75081 -11.42887 -11.33549 -10.93786 -10.89093 -10.78940 -10.24387 -10.11438 -10.00064 -9.75295 -9.30175 -9.15251 -9.06448 -8.82580 -8.75427 -8.47445 -5.99746 -3.98125 0.91125 1.02073 3.12076 3.20648 3.39957 3.45117 3.46710 3.57736 3.80740 4.32465 4.53780 4.57897 4.65309 4.70750 4.78016 4.86214 5.04346 5.08688 5.20957 5.29607 5.35316 5.35724 5.42397 5.58130 5.65739 5.76621 5.83418 5.97116 6.05164 6.08694 6.15940 6.16344 6.18503 6.24800 6.44423 6.72871 6.77703 7.22421 7.40719 7.48186 7.81911 7.91510 8.54472 8.73254 9.03928 9.63419 11.13195 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025375 B = 0.003659 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.171409 B = 7651.028198 C = 7759.907157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.122 4.122 11 C 0.511 3.489 12 O -0.544 6.544 13 N -0.727 5.727 14 C 0.188 3.812 15 H 0.096 0.904 16 C -0.129 4.129 17 C -0.154 4.154 18 C 0.070 3.930 19 O -0.328 6.328 20 C 0.106 3.894 21 C -0.133 4.133 22 C -0.106 4.106 23 C -0.128 4.128 24 C -0.091 4.091 25 C -0.121 4.121 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.018 0.982 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.405 0.595 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.716 -17.015 -0.763 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.035 4.035 10 C -0.162 4.162 11 C 0.300 3.700 12 O -0.420 6.420 13 N -0.383 5.383 14 C 0.083 3.917 15 H 0.114 0.886 16 C -0.168 4.168 17 C -0.192 4.192 18 C -0.004 4.004 19 O -0.245 6.245 20 C 0.062 3.938 21 C -0.151 4.151 22 C -0.124 4.124 23 C -0.146 4.146 24 C -0.110 4.110 25 C -0.122 4.122 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.242 0.758 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 21.785 -16.165 -0.772 27.138 hybrid contribution 0.323 0.515 -0.049 0.610 sum 22.108 -15.650 -0.821 27.099 Atomic orbital electron populations 1.69912 1.06289 1.26917 1.51216 1.24971 0.94701 0.99203 0.94389 0.86795 0.80632 0.83415 0.78701 1.20280 1.21473 1.18535 1.21132 0.89335 0.94556 1.51139 0.90938 1.19357 0.96344 0.90231 0.97582 1.21660 0.88027 1.03148 1.03346 1.21539 0.91554 0.82777 0.74151 1.90632 1.70772 1.31501 1.49113 1.46327 1.05407 1.09778 1.76741 1.19840 0.81870 0.94236 0.95782 0.88574 1.21757 0.98816 1.01673 0.94508 1.21652 1.02730 0.94976 0.99844 1.22543 0.99191 0.95469 0.83214 1.86282 1.34574 1.88231 1.15374 1.18498 0.92244 0.91962 0.91112 1.21299 0.97599 0.97536 0.98672 1.21068 0.96664 0.98221 0.96418 1.21204 1.00729 0.92289 1.00354 1.21006 0.96395 0.98866 0.94728 1.20433 0.98715 0.94657 0.98394 0.92759 0.95871 0.96328 0.89681 0.89675 0.75779 0.91506 0.90366 0.90704 0.90064 0.92689 0.88283 0.85140 0.85542 0.85619 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.89 27.47 -169.99 -4.67 18.22 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 7 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C 0.00 0.07 3.33 -27.88 -0.09 -0.02 16 10 C -0.12 -2.47 5.64 -27.88 -0.16 -2.62 16 11 C 0.51 9.61 7.73 -10.99 -0.08 9.53 16 12 O -0.54 -12.09 15.64 5.56 0.09 -12.00 16 13 N -0.73 -10.71 3.27 -54.55 -0.18 -10.89 16 14 C 0.19 2.42 2.62 -68.69 -0.18 2.24 16 15 H 0.10 1.36 7.36 -51.93 -0.38 0.98 16 16 C -0.13 -1.47 5.53 -27.21 -0.15 -1.62 16 17 C -0.15 -1.60 5.34 -27.95 -0.15 -1.75 16 18 C 0.07 0.63 6.48 36.36 0.24 0.87 16 19 O -0.33 -3.62 8.36 -20.40 -0.17 -3.79 16 20 C 0.11 1.14 5.27 -39.45 -0.21 0.94 16 21 C -0.13 -1.22 10.01 -39.37 -0.39 -1.61 16 22 C -0.11 -0.84 10.03 -39.58 -0.40 -1.24 16 23 C -0.13 -1.05 10.05 -39.51 -0.40 -1.44 16 24 C -0.09 -0.89 9.69 -39.60 -0.38 -1.27 16 25 C -0.12 -1.35 4.80 -104.35 -0.50 -1.85 16 26 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 27 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 28 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 29 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.08 1.63 8.14 -51.92 -0.42 1.20 16 31 H 0.41 5.56 6.66 -40.82 -0.27 5.29 16 32 H 0.07 0.65 7.90 -51.93 -0.41 0.24 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.02 6.90 -51.93 -0.36 0.66 16 36 H 0.05 0.44 7.89 -51.93 -0.41 0.03 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.13 1.09 7.98 -52.48 -0.42 0.67 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -34.14 331.66 -8.43 -42.57 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.98 Total: 2.00 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -3.29 Total: -13.49 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.60 Total: -38.50 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.08 Total: -15.79 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.67 Total: 18.22 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.14 -8.43 -42.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291758388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.021 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds