Wall clock time and date at job start Tue Mar 31 2020 06:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99732 * 2 1 4 4 H 1.48500 * 109.47134 * 269.99350 * 3 2 1 5 5 H 1.48500 * 109.47466 * 30.00080 * 3 2 1 6 6 H 1.48510 * 109.46872 * 149.99990 * 3 2 1 7 7 C 1.37875 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99993 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00120 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47309 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47236 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99997 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99938 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99683 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.73390 * 34.49465 * 14 13 11 16 16 C 1.52896 * 109.60467 * 274.08724 * 14 13 11 17 17 C 1.52157 * 110.76759 * 323.44130 * 16 14 13 18 18 C 1.51429 * 113.45384 * 292.57449 * 17 16 14 19 19 O 1.43116 * 110.98852 * 65.57191 * 18 17 16 20 20 C 1.36205 * 115.62487 * 273.14034 * 19 18 17 21 21 C 1.38879 * 119.84506 * 251.08408 * 20 19 18 22 22 C 1.38181 * 119.65557 * 178.18343 * 21 20 19 23 23 C 1.38290 * 120.20662 * 359.97438 * 22 21 20 24 24 C 1.38378 * 120.09778 * 0.36734 * 23 22 21 25 25 C 1.37935 * 120.23873 * 69.98018 * 20 19 18 26 26 H 0.96995 * 120.00300 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46931 * 60.00494 * 9 7 2 28 28 H 1.08998 * 109.47291 * 300.00436 * 9 7 2 29 29 H 1.08994 * 109.47530 * 59.99636 * 10 9 7 30 30 H 1.09008 * 109.46750 * 299.99889 * 10 9 7 31 31 H 0.97004 * 119.99880 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.21963 * 203.10761 * 16 14 13 33 33 H 1.08999 * 109.18188 * 83.74993 * 16 14 13 34 34 H 1.09006 * 108.68655 * 171.55089 * 17 16 14 35 35 H 1.08995 * 108.68603 * 53.59911 * 17 16 14 36 36 H 1.09003 * 109.17253 * 305.18751 * 18 17 16 37 37 H 1.08990 * 109.13091 * 185.94095 * 18 17 16 38 38 H 1.07996 * 120.17260 * 358.17650 * 21 20 19 39 39 H 1.07998 * 119.89765 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.95210 * 180.34720 * 23 22 21 41 41 H 1.08004 * 120.17415 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5286 -2.6365 0.0022 12 8 6.1349 -1.5861 0.0026 13 7 6.2025 -3.8037 0.0028 14 6 7.6674 -3.8036 0.0035 15 1 8.0352 -2.9578 0.5844 16 6 8.1810 -3.7013 -1.4330 17 6 7.2860 -4.4834 -2.3830 18 6 7.3406 -5.9811 -2.1668 19 8 6.8059 -6.3342 -0.8871 20 6 7.6889 -6.3022 0.1495 21 6 8.1175 -7.4892 0.7292 22 6 9.0420 -7.4540 1.7556 23 6 9.5387 -6.2435 2.2034 24 6 9.1057 -5.0609 1.6300 25 6 8.1758 -5.0967 0.6102 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6800 0.8912 28 1 3.8752 -0.6803 -0.8888 29 1 3.6586 -3.1502 -0.8891 30 1 3.6579 -3.1505 0.8908 31 1 5.7174 -4.6437 0.0029 32 1 9.1932 -4.1027 -1.4816 33 1 8.1957 -2.6539 -1.7344 34 1 7.5902 -4.2670 -3.4071 35 1 6.2574 -4.1485 -2.2489 36 1 8.3770 -6.3138 -2.2258 37 1 6.7610 -6.4759 -2.9460 38 1 7.7303 -8.4348 0.3797 39 1 9.3778 -8.3746 2.2095 40 1 10.2653 -6.2211 3.0021 41 1 9.4924 -4.1148 1.9791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291758388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:37 Heat of formation + Delta-G solvation = -79.700592 kcal Electronic energy + Delta-G solvation = -23103.143687 eV Core-core repulsion = 19753.843128 eV Total energy + Delta-G solvation = -3349.300559 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.99739 -40.36589 -38.43551 -36.91055 -35.53332 -33.97041 -33.28300 -32.31718 -31.18237 -28.68981 -27.73083 -25.82402 -23.91040 -23.26355 -22.21741 -21.46695 -20.84476 -19.26869 -18.94303 -17.90060 -17.38149 -16.99402 -16.62359 -16.27159 -16.15287 -16.02534 -15.63216 -15.11968 -14.94066 -14.76114 -14.55149 -14.39782 -14.08501 -13.69617 -13.41833 -13.26303 -13.07286 -12.91203 -12.45844 -12.26149 -12.12490 -11.98560 -11.78281 -11.71009 -11.62211 -11.41470 -11.01182 -10.80021 -10.78806 -10.10945 -9.84028 -9.51150 -8.32157 -6.35363 0.20511 0.32616 1.32659 1.34301 1.49875 1.67101 2.24932 2.34546 2.47693 2.98947 3.03231 3.46649 3.77633 3.85985 3.96154 3.98245 4.03349 4.22163 4.32840 4.37576 4.42630 4.45850 4.54705 4.58142 4.62014 4.64509 4.85846 4.92653 4.98007 5.03937 5.10132 5.20543 5.30692 5.39102 5.42610 5.42724 5.53284 5.59283 5.61366 5.80448 6.22839 6.48871 6.58022 6.70631 7.28684 7.29924 8.83694 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025375 B = 0.003659 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.171409 B = 7651.028198 C = 7759.907157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.014 3.986 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.531 4.531 8 H 0.048 0.952 9 C 0.009 3.991 10 C -0.117 4.117 11 C 0.517 3.483 12 O -0.582 6.582 13 N -0.707 5.707 14 C 0.185 3.815 15 H 0.079 0.921 16 C -0.125 4.125 17 C -0.152 4.152 18 C 0.070 3.930 19 O -0.342 6.342 20 C 0.092 3.908 21 C -0.139 4.139 22 C -0.100 4.100 23 C -0.126 4.126 24 C -0.102 4.102 25 C -0.137 4.137 26 H 0.268 0.732 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.412 0.588 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.145 0.855 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.853 -18.577 -0.588 30.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.066 0.934 9 C -0.029 4.029 10 C -0.157 4.157 11 C 0.305 3.695 12 O -0.462 6.462 13 N -0.361 5.361 14 C 0.081 3.919 15 H 0.097 0.903 16 C -0.164 4.164 17 C -0.190 4.190 18 C -0.004 4.004 19 O -0.259 6.259 20 C 0.048 3.952 21 C -0.157 4.157 22 C -0.118 4.118 23 C -0.144 4.144 24 C -0.120 4.120 25 C -0.138 4.138 26 H 0.077 0.923 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.250 0.750 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.135 0.865 38 H 0.162 0.838 39 H 0.173 0.827 40 H 0.169 0.831 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 23.935 -17.778 -0.600 29.822 hybrid contribution -0.325 0.870 -0.076 0.932 sum 23.610 -16.908 -0.676 29.048 Atomic orbital electron populations 1.70023 1.07795 1.28143 1.52441 1.25811 0.95518 1.02885 0.94177 0.85805 0.79189 0.79360 0.79211 1.19230 1.20216 1.18642 1.21423 0.91235 0.93714 1.50477 0.93379 1.19191 0.93925 0.93428 0.96389 1.21490 0.89480 1.00073 1.04661 1.21126 0.90871 0.83306 0.74167 1.90617 1.71212 1.32984 1.51433 1.46123 1.06580 1.08662 1.74704 1.19935 0.80133 0.95041 0.96840 0.90327 1.21713 1.00146 1.00828 0.93696 1.21655 1.00865 0.96016 1.00490 1.22655 1.00432 0.94332 0.82971 1.86262 1.35320 1.88262 1.16047 1.18680 0.92660 0.92401 0.91453 1.21540 0.97785 0.97490 0.98873 1.21451 0.95501 0.99324 0.95474 1.21524 1.00719 0.91714 1.00473 1.21201 0.96269 1.00021 0.94534 1.20291 1.00159 0.93668 0.99654 0.92327 0.97183 0.97155 0.88271 0.88564 0.74961 0.89537 0.92384 0.89073 0.92521 0.91279 0.86509 0.83763 0.82673 0.83127 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.00 13.96 21.45 0.30 -59.70 16 2 C 0.01 0.83 5.47 84.65 0.46 1.30 16 3 Si 0.94 47.55 27.47 68.60 1.88 49.44 16 4 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.26 -13.22 6.54 99.48 0.65 -12.57 16 7 C -0.53 -31.48 9.66 25.60 0.25 -31.23 16 8 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 9 C 0.01 0.45 3.33 29.85 0.10 0.54 16 10 C -0.12 -4.76 5.64 29.85 0.17 -4.59 16 11 C 0.52 19.59 7.73 87.66 0.68 20.27 16 12 O -0.58 -26.35 15.64 -3.03 -0.05 -26.40 16 13 N -0.71 -20.71 3.27 -444.87 -1.45 -22.17 16 14 C 0.19 4.73 2.62 44.50 0.12 4.85 16 15 H 0.08 2.28 7.36 -2.39 -0.02 2.26 16 16 C -0.13 -2.79 5.53 30.28 0.17 -2.62 16 17 C -0.15 -3.01 5.34 29.80 0.16 -2.85 16 18 C 0.07 1.13 6.48 71.47 0.46 1.59 16 19 O -0.34 -7.00 8.36 -95.89 -0.80 -7.80 16 20 C 0.09 1.82 5.27 22.35 0.12 1.94 16 21 C -0.14 -2.17 10.01 22.41 0.22 -1.95 16 22 C -0.10 -1.24 10.03 22.27 0.22 -1.02 16 23 C -0.13 -1.70 10.05 22.32 0.22 -1.47 16 24 C -0.10 -1.80 9.69 22.26 0.22 -1.59 16 25 C -0.14 -2.88 4.80 -19.69 -0.09 -2.98 16 26 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 27 H 0.01 0.53 7.16 -2.39 -0.02 0.51 16 28 H 0.01 0.53 7.53 -2.39 -0.02 0.52 16 29 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 30 H 0.10 3.66 8.14 -2.38 -0.02 3.65 16 31 H 0.41 11.08 6.66 -92.71 -0.62 10.46 16 32 H 0.09 1.57 7.90 -2.39 -0.02 1.55 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.06 1.40 6.90 -2.39 -0.02 1.38 16 36 H 0.07 0.93 7.89 -2.39 -0.02 0.91 16 37 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 40 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.13 2.13 7.98 -2.91 -0.02 2.11 16 Total: -1.00 -74.20 331.66 3.71 -70.49 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.36 Total: 15.95 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 3.47 Total: -19.82 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -1.16 Total: -81.86 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.85 Total: -34.20 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.88 Total: 49.44 kcal Total: -74.20 3.71 -70.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291758388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.207 kcal (2) G-P(sol) polarization free energy of solvation -74.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds