Wall clock time and date at job start Tue Mar 31 2020 06:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00240 * 2 1 4 4 H 1.48501 * 109.47245 * 240.00048 * 3 2 1 5 5 H 1.48495 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46837 * 120.00281 * 3 2 1 7 7 C 1.37885 * 119.99510 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99475 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46863 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00053 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99906 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00300 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.59710 * 34.68261 * 14 13 11 16 16 C 1.52887 * 109.60410 * 154.99877 * 14 13 11 17 17 C 1.52150 * 110.79122 * 203.03726 * 16 14 13 18 18 C 1.51427 * 113.45568 * 292.50612 * 17 16 14 19 19 O 1.43126 * 110.96304 * 65.49155 * 18 17 16 20 20 C 1.36173 * 115.61732 * 273.21573 * 19 18 17 21 21 C 1.38898 * 119.81805 * 250.90807 * 20 19 18 22 22 C 1.38169 * 119.67081 * 178.79829 * 21 20 19 23 23 C 1.38289 * 120.22102 * 359.79269 * 22 21 20 24 24 C 1.38388 * 120.08136 * 0.38367 * 23 22 21 25 25 C 1.37937 * 120.32188 * 70.43820 * 20 19 18 26 26 H 0.97004 * 119.99504 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47018 * 59.99971 * 9 7 2 28 28 H 1.08999 * 109.47334 * 299.99963 * 9 7 2 29 29 H 1.09000 * 109.46817 * 60.00264 * 10 9 7 30 30 H 1.08999 * 109.47162 * 300.00125 * 10 9 7 31 31 H 0.97002 * 120.00265 * 0.02562 * 13 11 10 32 32 H 1.08997 * 109.21290 * 82.70127 * 16 14 13 33 33 H 1.08999 * 109.21311 * 323.37439 * 16 14 13 34 34 H 1.08998 * 108.68765 * 171.47590 * 17 16 14 35 35 H 1.09000 * 108.58025 * 53.45357 * 17 16 14 36 36 H 1.09006 * 109.17676 * 305.10942 * 18 17 16 37 37 H 1.08997 * 109.13774 * 185.84940 * 18 17 16 38 38 H 1.07996 * 120.16810 * 358.77167 * 21 20 19 39 39 H 1.08001 * 119.89085 * 179.77077 * 22 21 20 40 40 H 1.08003 * 119.95757 * 180.37287 * 23 22 21 41 41 H 1.08002 * 120.17657 * 180.09555 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 6 1.4915 -4.9672 -0.0012 12 8 0.2787 -4.9671 0.0006 13 7 2.1653 -6.1344 -0.0016 14 6 1.4328 -7.4032 -0.0004 15 1 0.5181 -7.2978 -0.5837 16 6 2.3061 -8.5003 -0.6098 17 6 1.4492 -9.6391 -1.1424 18 6 0.7359 -10.4159 -0.0557 19 8 -0.2284 -9.5952 0.6115 20 6 0.2461 -8.8582 1.6536 21 6 -0.1092 -9.1923 2.9542 22 6 0.3938 -8.4578 4.0108 23 6 1.2503 -7.3976 3.7762 24 6 1.6011 -7.0629 2.4801 25 6 1.0852 -7.7877 1.4245 26 1 -0.4849 0.8401 -0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8724 -3.6049 0.8877 30 1 2.8711 -3.6041 -0.8922 31 1 3.1354 -6.1345 -0.0019 32 1 2.9816 -8.8863 0.1535 33 1 2.8921 -8.0798 -1.4270 34 1 2.0870 -10.3246 -1.7004 35 1 0.7043 -9.2249 -1.8218 36 1 1.4677 -10.7706 0.6701 37 1 0.2300 -11.2721 -0.5018 38 1 -0.7757 -10.0218 3.1386 39 1 0.1170 -8.7122 5.0232 40 1 1.6458 -6.8301 4.6057 41 1 2.2710 -6.2363 2.2952 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291758390.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:41 Heat of formation + Delta-G solvation = -61.490043 kcal Electronic energy + Delta-G solvation = -22906.720717 eV Core-core repulsion = 19558.209827 eV Total energy + Delta-G solvation = -3348.510890 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82620 -38.98416 -37.52021 -35.88889 -33.43327 -33.10009 -31.39504 -30.57301 -30.34408 -27.51940 -25.83821 -24.56678 -22.77007 -21.76005 -21.36702 -20.54702 -19.53598 -18.15620 -16.89200 -16.78650 -15.98932 -15.61784 -15.44407 -15.10290 -14.91220 -14.66774 -14.39829 -14.12609 -13.67791 -13.46735 -13.12816 -12.89008 -12.35413 -12.23185 -12.17178 -12.02270 -11.62910 -11.35387 -11.14875 -10.98063 -10.94914 -10.88342 -10.60794 -10.17172 -9.94272 -9.64993 -9.17416 -9.01533 -8.90484 -8.80770 -8.53062 -8.30447 -5.94442 -3.99130 1.18915 1.32655 3.24266 3.35107 3.36773 3.39503 3.41016 3.48047 3.83045 4.44579 4.48596 4.57680 4.70673 4.76661 4.93719 5.02290 5.07747 5.21570 5.33509 5.37974 5.40240 5.45103 5.51131 5.59078 5.62839 5.76316 5.80955 5.93538 6.07648 6.22227 6.23980 6.30776 6.39972 6.48617 6.69707 6.79264 6.89899 7.40932 7.75374 7.87863 7.88148 8.08939 8.39935 8.79798 9.09404 9.64252 11.16421 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.003565 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.197194 B = 7852.707432 C = 8432.966372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.509 3.491 12 O -0.525 6.525 13 N -0.740 5.740 14 C 0.187 3.813 15 H 0.102 0.898 16 C -0.124 4.124 17 C -0.151 4.151 18 C 0.065 3.935 19 O -0.326 6.326 20 C 0.098 3.902 21 C -0.135 4.135 22 C -0.111 4.111 23 C -0.126 4.126 24 C -0.088 4.088 25 C -0.116 4.116 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.397 0.603 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.611 -23.429 2.970 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.297 3.703 12 O -0.399 6.399 13 N -0.394 5.394 14 C 0.081 3.919 15 H 0.120 0.880 16 C -0.162 4.162 17 C -0.189 4.189 18 C -0.010 4.010 19 O -0.242 6.242 20 C 0.055 3.945 21 C -0.153 4.153 22 C -0.129 4.129 23 C -0.144 4.144 24 C -0.106 4.106 25 C -0.118 4.118 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.358 -23.286 2.876 24.067 hybrid contribution 1.082 0.971 0.078 1.456 sum 6.440 -22.315 2.954 23.413 Atomic orbital electron populations 1.69995 1.06054 1.26683 1.50032 1.25026 0.94816 0.99198 0.95301 0.86655 0.79544 0.83214 0.78520 1.20259 1.21283 1.20264 1.21181 0.92857 0.91032 1.51587 0.92682 1.18891 0.93157 0.89331 0.98639 1.21874 1.00712 0.91913 1.02439 1.21613 0.88775 0.85574 0.74326 1.90695 1.14420 1.87445 1.47343 1.46269 1.09864 1.05185 1.78063 1.19860 0.96599 0.83481 0.91962 0.88048 1.21623 0.98122 0.95332 1.01101 1.21649 0.99888 0.98065 0.99263 1.22526 0.91831 0.92423 0.94239 1.86336 1.35013 1.58156 1.44735 1.18365 0.96561 0.92413 0.87193 1.21204 1.01812 1.01191 0.91100 1.21006 0.97503 0.95779 0.98615 1.21235 0.98655 0.97537 0.96988 1.20964 0.99304 0.98669 0.91664 1.20618 0.98444 0.95966 0.96772 0.92893 0.95846 0.95823 0.90310 0.90221 0.76855 0.91332 0.90118 0.90177 0.90546 0.92548 0.88441 0.85455 0.85737 0.85755 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 2 C 0.06 1.71 5.46 -17.81 -0.10 1.61 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.62 5.64 -27.88 -0.16 -2.77 16 11 C 0.51 9.83 7.32 -10.99 -0.08 9.75 16 12 O -0.53 -12.74 15.64 5.55 0.09 -12.65 16 13 N -0.74 -10.37 3.69 -54.54 -0.20 -10.57 16 14 C 0.19 2.53 2.23 -68.68 -0.15 2.38 16 15 H 0.10 1.69 7.31 -51.93 -0.38 1.31 16 16 C -0.12 -1.16 5.17 -27.22 -0.14 -1.30 16 17 C -0.15 -1.24 5.56 -27.96 -0.16 -1.40 16 18 C 0.06 0.57 6.48 36.36 0.24 0.80 16 19 O -0.33 -4.21 9.99 -20.29 -0.20 -4.41 16 20 C 0.10 1.34 5.61 -39.45 -0.22 1.12 16 21 C -0.13 -1.63 10.01 -39.36 -0.39 -2.03 16 22 C -0.11 -1.26 10.03 -39.59 -0.40 -1.66 16 23 C -0.13 -1.56 10.05 -39.51 -0.40 -1.95 16 24 C -0.09 -1.22 9.19 -39.60 -0.36 -1.59 16 25 C -0.12 -1.65 5.05 -104.35 -0.53 -2.17 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.40 4.21 8.61 -40.82 -0.35 3.86 16 32 H 0.07 0.58 7.90 -51.93 -0.41 0.17 16 33 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.71 8.00 -51.93 -0.42 0.30 16 36 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 41 H 0.13 1.75 6.78 -52.49 -0.36 1.40 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -35.49 338.24 -8.87 -44.36 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.09 Total: 2.06 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -3.28 Total: -13.69 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.54 Total: -37.50 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.12 Total: -17.07 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.49 -8.87 -44.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291758390.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.131 kcal (2) G-P(sol) polarization free energy of solvation -35.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds