Wall clock time and date at job start Tue Mar 31 2020 06:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00240 * 2 1 4 4 H 1.48501 * 109.47245 * 240.00048 * 3 2 1 5 5 H 1.48495 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46837 * 120.00281 * 3 2 1 7 7 C 1.37885 * 119.99510 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99475 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46863 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00053 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99906 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00300 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.59710 * 34.68261 * 14 13 11 16 16 C 1.52887 * 109.60410 * 154.99877 * 14 13 11 17 17 C 1.52150 * 110.79122 * 203.03726 * 16 14 13 18 18 C 1.51427 * 113.45568 * 292.50612 * 17 16 14 19 19 O 1.43126 * 110.96304 * 65.49155 * 18 17 16 20 20 C 1.36173 * 115.61732 * 273.21573 * 19 18 17 21 21 C 1.38898 * 119.81805 * 250.90807 * 20 19 18 22 22 C 1.38169 * 119.67081 * 178.79829 * 21 20 19 23 23 C 1.38289 * 120.22102 * 359.79269 * 22 21 20 24 24 C 1.38388 * 120.08136 * 0.38367 * 23 22 21 25 25 C 1.37937 * 120.32188 * 70.43820 * 20 19 18 26 26 H 0.97004 * 119.99504 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47018 * 59.99971 * 9 7 2 28 28 H 1.08999 * 109.47334 * 299.99963 * 9 7 2 29 29 H 1.09000 * 109.46817 * 60.00264 * 10 9 7 30 30 H 1.08999 * 109.47162 * 300.00125 * 10 9 7 31 31 H 0.97002 * 120.00265 * 0.02562 * 13 11 10 32 32 H 1.08997 * 109.21290 * 82.70127 * 16 14 13 33 33 H 1.08999 * 109.21311 * 323.37439 * 16 14 13 34 34 H 1.08998 * 108.68765 * 171.47590 * 17 16 14 35 35 H 1.09000 * 108.58025 * 53.45357 * 17 16 14 36 36 H 1.09006 * 109.17676 * 305.10942 * 18 17 16 37 37 H 1.08997 * 109.13774 * 185.84940 * 18 17 16 38 38 H 1.07996 * 120.16810 * 358.77167 * 21 20 19 39 39 H 1.08001 * 119.89085 * 179.77077 * 22 21 20 40 40 H 1.08003 * 119.95757 * 180.37287 * 23 22 21 41 41 H 1.08002 * 120.17657 * 180.09555 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 6 1.4915 -4.9672 -0.0012 12 8 0.2787 -4.9671 0.0006 13 7 2.1653 -6.1344 -0.0016 14 6 1.4328 -7.4032 -0.0004 15 1 0.5181 -7.2978 -0.5837 16 6 2.3061 -8.5003 -0.6098 17 6 1.4492 -9.6391 -1.1424 18 6 0.7359 -10.4159 -0.0557 19 8 -0.2284 -9.5952 0.6115 20 6 0.2461 -8.8582 1.6536 21 6 -0.1092 -9.1923 2.9542 22 6 0.3938 -8.4578 4.0108 23 6 1.2503 -7.3976 3.7762 24 6 1.6011 -7.0629 2.4801 25 6 1.0852 -7.7877 1.4245 26 1 -0.4849 0.8401 -0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8724 -3.6049 0.8877 30 1 2.8711 -3.6041 -0.8922 31 1 3.1354 -6.1345 -0.0019 32 1 2.9816 -8.8863 0.1535 33 1 2.8921 -8.0798 -1.4270 34 1 2.0870 -10.3246 -1.7004 35 1 0.7043 -9.2249 -1.8218 36 1 1.4677 -10.7706 0.6701 37 1 0.2300 -11.2721 -0.5018 38 1 -0.7757 -10.0218 3.1386 39 1 0.1170 -8.7122 5.0232 40 1 1.6458 -6.8301 4.6057 41 1 2.2710 -6.2363 2.2952 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291758390.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:40 Heat of formation + Delta-G solvation = -84.926483 kcal Electronic energy + Delta-G solvation = -22907.736998 eV Core-core repulsion = 19558.209827 eV Total energy + Delta-G solvation = -3349.527171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.83825 -40.42256 -38.41381 -37.05901 -35.55378 -34.15880 -33.05428 -31.94186 -31.30483 -28.60802 -27.53033 -25.70789 -23.94685 -23.35647 -22.24819 -21.64113 -21.05186 -19.07745 -18.79579 -17.82653 -17.45771 -16.97798 -16.57040 -16.36617 -16.19400 -16.04462 -15.75016 -15.03080 -14.78090 -14.63511 -14.38237 -14.17708 -14.15636 -13.63293 -13.24794 -13.07025 -13.05892 -12.77419 -12.57556 -12.44548 -12.25025 -11.92279 -11.83299 -11.69409 -11.63296 -11.32664 -11.01510 -10.73875 -10.56442 -10.20249 -9.81198 -9.48225 -8.17693 -6.32299 0.24141 0.35206 1.42021 1.46782 1.54545 1.69684 2.17126 2.44391 2.50571 2.90661 3.15177 3.58216 3.78227 3.89781 3.95333 3.99532 4.07522 4.18586 4.33266 4.44014 4.46731 4.50957 4.54589 4.57586 4.61879 4.76882 4.81276 4.93290 5.03909 5.04313 5.10592 5.24190 5.31571 5.38088 5.48872 5.52305 5.62232 5.64385 5.80163 5.85192 6.17088 6.51834 6.59767 6.86193 7.34919 7.38373 8.94867 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.003565 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.197194 B = 7852.707432 C = 8432.966372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.118 4.118 11 C 0.513 3.487 12 O -0.585 6.585 13 N -0.712 5.712 14 C 0.186 3.814 15 H 0.063 0.937 16 C -0.116 4.116 17 C -0.149 4.149 18 C 0.057 3.943 19 O -0.348 6.348 20 C 0.086 3.914 21 C -0.142 4.142 22 C -0.107 4.107 23 C -0.136 4.136 24 C -0.108 4.108 25 C -0.137 4.137 26 H 0.262 0.738 27 H -0.020 1.020 28 H -0.020 1.020 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.419 0.581 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.142 0.858 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.474 -24.575 3.400 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.096 0.904 9 C 0.005 3.995 10 C -0.158 4.158 11 C 0.301 3.699 12 O -0.464 6.464 13 N -0.365 5.365 14 C 0.081 3.919 15 H 0.081 0.919 16 C -0.154 4.154 17 C -0.187 4.187 18 C -0.017 4.017 19 O -0.266 6.266 20 C 0.042 3.958 21 C -0.161 4.161 22 C -0.125 4.125 23 C -0.154 4.154 24 C -0.127 4.127 25 C -0.139 4.139 26 H 0.071 0.929 27 H -0.002 1.002 28 H -0.002 1.002 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.256 0.744 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.132 0.868 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.164 0.836 39 H 0.173 0.827 40 H 0.160 0.840 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.300 -24.487 3.301 26.065 hybrid contribution 0.141 1.227 -0.047 1.236 sum 8.441 -23.260 3.254 24.957 Atomic orbital electron populations 1.70189 1.08405 1.27858 1.51408 1.26161 0.95694 1.04017 0.94586 0.85361 0.78032 0.77241 0.79530 1.18604 1.21422 1.18600 1.21688 0.94025 0.91529 1.50920 0.90440 1.18673 0.93693 0.92594 0.94511 1.21646 0.99258 0.89843 1.05007 1.21402 0.87840 0.86768 0.73852 1.90680 1.16935 1.88276 1.50552 1.45909 1.10812 1.04129 1.75650 1.19934 0.95996 0.83970 0.91997 0.91924 1.21623 0.97754 0.94239 1.01762 1.21674 0.99851 0.98170 0.98990 1.22832 0.91916 0.92501 0.94455 1.86297 1.36776 1.58584 1.44938 1.18606 0.96447 0.92646 0.88106 1.21517 1.01921 1.01877 0.90738 1.21373 0.96377 0.94822 0.99935 1.21529 0.98871 0.98087 0.96909 1.21089 1.00096 0.98884 0.92583 1.20715 0.99604 0.96795 0.96806 0.92890 1.00193 1.00198 0.87578 0.87516 0.74361 0.89739 0.88622 0.86775 0.92181 0.91350 0.86208 0.83595 0.82721 0.83968 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.47 13.29 21.45 0.28 -60.19 16 2 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 3 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.43 4.26 29.85 0.13 2.56 16 10 C -0.12 -4.75 5.64 29.85 0.17 -4.58 16 11 C 0.51 20.35 7.32 87.66 0.64 20.99 16 12 O -0.59 -30.29 15.64 -3.04 -0.05 -30.34 16 13 N -0.71 -19.69 3.69 -444.86 -1.64 -21.33 16 14 C 0.19 5.09 2.23 44.50 0.10 5.19 16 15 H 0.06 2.23 7.31 -2.39 -0.02 2.21 16 16 C -0.12 -1.97 5.17 30.28 0.16 -1.81 16 17 C -0.15 -2.19 5.56 29.80 0.17 -2.03 16 18 C 0.06 0.90 6.48 71.47 0.46 1.37 16 19 O -0.35 -8.96 9.99 -95.52 -0.95 -9.92 16 20 C 0.09 2.33 5.61 22.36 0.13 2.46 16 21 C -0.14 -3.30 10.01 22.41 0.22 -3.08 16 22 C -0.11 -2.27 10.03 22.27 0.22 -2.04 16 23 C -0.14 -3.24 10.05 22.32 0.22 -3.01 16 24 C -0.11 -3.01 9.19 22.26 0.20 -2.80 16 25 C -0.14 -3.92 5.05 -19.69 -0.10 -4.02 16 26 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 27 H -0.02 -1.31 8.10 -2.38 -0.02 -1.33 16 28 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 29 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 31 H 0.42 8.04 8.61 -92.71 -0.80 7.24 16 32 H 0.08 1.21 7.90 -2.39 -0.02 1.19 16 33 H 0.10 1.34 8.10 -2.39 -0.02 1.32 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.10 8.00 -2.39 -0.02 1.08 16 36 H 0.07 0.93 7.90 -2.38 -0.02 0.91 16 37 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 41 H 0.12 3.38 6.78 -2.91 -0.02 3.36 16 Total: -1.00 -82.76 338.24 3.32 -79.44 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.23 Total: 17.51 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 3.42 Total: -21.75 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -1.36 Total: -81.52 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -1.00 Total: -40.25 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -82.76 3.32 -79.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291758390.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.485 kcal (2) G-P(sol) polarization free energy of solvation -82.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds