Wall clock time and date at job start Tue Mar 31 2020 06:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48507 * 109.46699 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47205 * 299.99621 * 3 2 1 6 6 H 1.48498 * 109.46958 * 59.99876 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 O 1.42894 * 110.26834 * 62.92430 * 15 14 13 17 17 C 1.54347 * 110.30552 * 185.00289 * 15 14 13 18 18 C 1.54344 * 102.39681 * 92.57468 * 17 15 14 19 19 C 1.51369 * 105.16880 * 26.34900 * 18 17 15 20 20 C 1.38493 * 130.39648 * 162.80815 * 19 18 17 21 21 C 1.38103 * 120.21818 * 179.97438 * 20 19 18 22 22 C 1.38247 * 119.93632 * 0.02562 * 21 20 19 23 23 C 1.38108 * 119.93667 * 359.97438 * 22 21 20 24 24 C 1.38217 * 109.75771 * 342.81155 * 19 18 17 25 25 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 27 27 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 28 28 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 29 29 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 30 30 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 31 31 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 32 32 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 33 33 H 0.96704 * 114.00115 * 300.69818 * 16 15 14 34 34 H 1.09000 * 110.82170 * 210.80774 * 17 15 14 35 35 H 1.09002 * 110.81908 * 334.34756 * 17 15 14 36 36 H 1.08994 * 110.30367 * 145.26758 * 18 17 15 37 37 H 1.08999 * 110.30304 * 267.42631 * 18 17 15 38 38 H 1.08000 * 119.89310 * 359.97438 * 20 19 18 39 39 H 1.08004 * 120.03290 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.03496 * 179.97438 * 22 21 20 41 41 H 1.07996 * 119.89241 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 6 1.4330 -7.4030 0.0109 15 6 2.4271 -8.5660 0.0159 16 8 3.2125 -8.5406 1.2094 17 6 1.6791 -9.9107 -0.1045 18 6 1.6774 -10.1535 -1.6287 19 6 2.8894 -9.4110 -2.1494 20 6 3.5621 -9.5246 -3.3547 21 6 4.6607 -8.7293 -3.6151 22 6 5.0915 -7.8169 -2.6700 23 6 4.4221 -7.7022 -1.4674 24 6 3.3201 -8.4989 -1.2045 25 1 -0.4850 0.8402 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 3.1355 -6.1343 0.0057 31 1 0.8060 -7.4568 0.9009 32 1 0.8066 -7.4648 -0.8790 33 1 3.7220 -7.7273 1.3278 34 1 2.2199 -10.7027 0.4135 35 1 0.6610 -9.8230 0.2750 36 1 1.7660 -11.2187 -1.8421 37 1 0.7675 -9.7520 -2.0747 38 1 3.2264 -10.2373 -4.0934 39 1 5.1828 -8.8200 -4.5561 40 1 5.9507 -7.1945 -2.8717 41 1 4.7590 -6.9889 -0.7298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291952525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:39 Heat of formation + Delta-G solvation = -74.700735 kcal Electronic energy + Delta-G solvation = -22634.789254 eV Core-core repulsion = 19285.705505 eV Total energy + Delta-G solvation = -3349.083749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00251 -39.01361 -37.43122 -34.92639 -34.03818 -33.45052 -31.28360 -30.95995 -29.45521 -28.25405 -25.88320 -24.38086 -22.98422 -21.75194 -21.20911 -20.56548 -19.58825 -17.76062 -17.02352 -16.47865 -16.04663 -15.73952 -15.41024 -15.21578 -14.75667 -14.59350 -14.37680 -14.06279 -13.63458 -13.24910 -13.15666 -12.82825 -12.78652 -12.31081 -12.19151 -11.98931 -11.86194 -11.71568 -11.25150 -11.16367 -11.07973 -10.94678 -10.58438 -10.28604 -9.97290 -9.67991 -9.19763 -9.08244 -9.02887 -8.86110 -8.81625 -8.32602 -5.96435 -4.00857 1.07180 1.13895 3.22830 3.32361 3.37456 3.40524 3.43370 3.49344 3.85676 4.04157 4.25994 4.45064 4.47351 4.70739 4.77439 4.79444 4.98171 5.09656 5.25744 5.31161 5.38652 5.41603 5.47228 5.57261 5.60294 5.71528 5.77479 5.85730 5.88696 6.18530 6.20395 6.21549 6.26705 6.32685 6.61598 6.72957 6.86976 7.29306 7.73982 7.79228 7.85626 8.06721 8.38021 8.74020 9.07789 9.62783 11.14552 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.003412 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.121476 B = 8205.136272 C = 8827.911713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.511 3.489 12 O -0.532 6.532 13 N -0.744 5.744 14 C 0.102 3.898 15 C 0.164 3.836 16 O -0.547 6.547 17 C -0.102 4.102 18 C -0.084 4.084 19 C -0.087 4.087 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.096 4.096 24 C -0.124 4.124 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.391 0.609 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.376 0.624 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.593 -22.768 -4.193 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.407 6.407 13 N -0.400 5.400 14 C -0.022 4.022 15 C 0.123 3.877 16 O -0.352 6.352 17 C -0.140 4.140 18 C -0.121 4.121 19 C -0.087 4.087 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.114 4.114 24 C -0.124 4.124 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.225 0.775 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.224 0.776 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.255 -23.230 -4.108 24.993 hybrid contribution 1.243 1.567 -0.219 2.012 sum 9.498 -21.663 -4.327 24.046 Atomic orbital electron populations 1.70012 1.06063 1.26469 1.50259 1.25028 0.94822 0.99241 0.95301 0.86536 0.80000 0.83838 0.77593 1.19747 1.21015 1.21006 1.21253 0.92951 0.90987 1.51300 0.92554 1.18905 0.93173 0.89368 0.98646 1.21875 1.00763 0.91902 1.02445 1.21573 0.88681 0.85501 0.74297 1.90674 1.14436 1.87560 1.47980 1.46204 1.09729 1.05615 1.78463 1.21892 0.94496 0.82595 1.03258 1.21028 0.89016 0.95789 0.81876 1.86584 1.63169 1.43849 1.41638 1.22276 1.00919 0.94917 0.95885 1.21098 0.95945 1.00500 0.94528 1.20470 0.96747 0.97192 0.94312 1.20628 0.95890 1.00084 0.96052 1.21084 0.96734 0.96047 0.99342 1.21062 1.00144 0.98780 0.93576 1.20560 0.94934 0.98485 0.97452 1.21044 0.96692 0.97451 0.97225 0.93001 0.95836 0.95779 0.90209 0.90282 0.77453 0.90333 0.90747 0.77611 0.89228 0.89251 0.89985 0.89491 0.86112 0.85747 0.85539 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.64 5.64 -27.88 -0.16 -2.79 16 11 C 0.51 9.89 7.83 -10.98 -0.09 9.81 16 12 O -0.53 -12.67 15.98 5.55 0.09 -12.59 16 13 N -0.74 -10.49 5.09 -60.30 -0.31 -10.80 16 14 C 0.10 1.32 4.77 -4.04 -0.02 1.30 16 15 C 0.16 1.73 0.98 -90.74 -0.09 1.64 16 16 O -0.55 -5.85 13.05 -35.23 -0.46 -6.31 16 17 C -0.10 -0.90 6.32 -25.32 -0.16 -1.06 16 18 C -0.08 -0.68 6.76 -26.85 -0.18 -0.86 16 19 C -0.09 -0.88 6.14 -104.21 -0.64 -1.52 16 20 C -0.11 -1.00 10.04 -39.54 -0.40 -1.40 16 21 C -0.11 -1.02 10.05 -39.63 -0.40 -1.42 16 22 C -0.12 -1.10 10.05 -39.63 -0.40 -1.50 16 23 C -0.10 -0.96 9.08 -39.53 -0.36 -1.32 16 24 C -0.12 -1.32 4.83 -104.20 -0.50 -1.82 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.08 1.46 8.14 -51.92 -0.42 1.03 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.39 4.37 5.52 -40.82 -0.23 4.14 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.38 3.13 8.08 45.56 0.37 3.50 16 34 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 35 H 0.09 0.70 7.90 -51.93 -0.41 0.29 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.12 0.95 6.98 -52.49 -0.37 0.59 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -35.52 341.44 -8.98 -44.50 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.24 Total: 3.94 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -3.92 Total: -13.77 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.43 Total: -37.58 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.37 Total: -18.90 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.52 -8.98 -44.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291952525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.199 kcal (2) G-P(sol) polarization free energy of solvation -35.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds