Wall clock time and date at job start Tue Mar 31 2020 06:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48507 * 109.46699 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47205 * 299.99621 * 3 2 1 6 6 H 1.48498 * 109.46958 * 59.99876 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 O 1.42894 * 110.26834 * 62.92430 * 15 14 13 17 17 C 1.54347 * 110.30552 * 185.00289 * 15 14 13 18 18 C 1.54344 * 102.39681 * 92.57468 * 17 15 14 19 19 C 1.51369 * 105.16880 * 26.34900 * 18 17 15 20 20 C 1.38493 * 130.39648 * 162.80815 * 19 18 17 21 21 C 1.38103 * 120.21818 * 179.97438 * 20 19 18 22 22 C 1.38247 * 119.93632 * 0.02562 * 21 20 19 23 23 C 1.38108 * 119.93667 * 359.97438 * 22 21 20 24 24 C 1.38217 * 109.75771 * 342.81155 * 19 18 17 25 25 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 27 27 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 28 28 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 29 29 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 30 30 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 31 31 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 32 32 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 33 33 H 0.96704 * 114.00115 * 300.69818 * 16 15 14 34 34 H 1.09000 * 110.82170 * 210.80774 * 17 15 14 35 35 H 1.09002 * 110.81908 * 334.34756 * 17 15 14 36 36 H 1.08994 * 110.30367 * 145.26758 * 18 17 15 37 37 H 1.08999 * 110.30304 * 267.42631 * 18 17 15 38 38 H 1.08000 * 119.89310 * 359.97438 * 20 19 18 39 39 H 1.08004 * 120.03290 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.03496 * 179.97438 * 22 21 20 41 41 H 1.07996 * 119.89241 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 6 1.4330 -7.4030 0.0109 15 6 2.4271 -8.5660 0.0159 16 8 3.2125 -8.5406 1.2094 17 6 1.6791 -9.9107 -0.1045 18 6 1.6774 -10.1535 -1.6287 19 6 2.8894 -9.4110 -2.1494 20 6 3.5621 -9.5246 -3.3547 21 6 4.6607 -8.7293 -3.6151 22 6 5.0915 -7.8169 -2.6700 23 6 4.4221 -7.7022 -1.4674 24 6 3.3201 -8.4989 -1.2045 25 1 -0.4850 0.8402 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 3.1355 -6.1343 0.0057 31 1 0.8060 -7.4568 0.9009 32 1 0.8066 -7.4648 -0.8790 33 1 3.7220 -7.7273 1.3278 34 1 2.2199 -10.7027 0.4135 35 1 0.6610 -9.8230 0.2750 36 1 1.7660 -11.2187 -1.8421 37 1 0.7675 -9.7520 -2.0747 38 1 3.2264 -10.2373 -4.0934 39 1 5.1828 -8.8200 -4.5561 40 1 5.9507 -7.1945 -2.8717 41 1 4.7590 -6.9889 -0.7298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291952525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:38 Heat of formation + Delta-G solvation = -99.704805 kcal Electronic energy + Delta-G solvation = -22635.873512 eV Core-core repulsion = 19285.705505 eV Total energy + Delta-G solvation = -3350.168007 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.83250 -40.45883 -38.28472 -35.65667 -35.62027 -35.29672 -33.03923 -31.92065 -30.23564 -29.32733 -27.57907 -25.57700 -23.68617 -23.44432 -22.17142 -21.48808 -20.91267 -18.95917 -18.47008 -17.72977 -17.38316 -16.72758 -16.66604 -16.46255 -16.23086 -15.67122 -15.55311 -15.08124 -14.64413 -14.40002 -14.32208 -14.16179 -13.81850 -13.64243 -13.42083 -13.24014 -12.93179 -12.84081 -12.53405 -12.48449 -12.43395 -11.94586 -11.93457 -11.81919 -11.64865 -11.29190 -11.12227 -10.77567 -10.58310 -10.19274 -9.78209 -9.52867 -8.18182 -6.32245 0.35735 0.44674 1.42564 1.43938 1.57173 1.66415 2.12459 2.43939 2.76599 3.10121 3.15124 3.32437 3.47684 3.60724 3.97485 4.04170 4.10753 4.14254 4.28330 4.43084 4.44095 4.48889 4.54542 4.61765 4.66324 4.78209 4.82329 4.93959 5.05532 5.08254 5.12532 5.20928 5.34203 5.49947 5.50837 5.59135 5.62031 5.62250 5.84954 6.06638 6.17088 6.46118 6.57823 6.86284 7.26412 7.38222 8.94756 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.003412 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.121476 B = 8205.136272 C = 8827.911713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.513 3.487 12 O -0.586 6.586 13 N -0.717 5.717 14 C 0.103 3.897 15 C 0.173 3.827 16 O -0.554 6.554 17 C -0.103 4.103 18 C -0.081 4.081 19 C -0.102 4.102 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.110 4.110 24 C -0.144 4.144 25 H 0.263 0.737 26 H -0.019 1.019 27 H -0.017 1.017 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.409 0.591 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.385 0.615 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.306 -23.310 -4.668 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.301 3.699 12 O -0.465 6.465 13 N -0.372 5.372 14 C -0.022 4.022 15 C 0.132 3.868 16 O -0.361 6.361 17 C -0.141 4.141 18 C -0.118 4.118 19 C -0.102 4.102 20 C -0.137 4.137 21 C -0.137 4.137 22 C -0.147 4.147 23 C -0.128 4.128 24 C -0.145 4.145 25 H 0.071 0.929 26 H 0.000 1.000 27 H 0.001 0.999 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.247 0.753 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.234 0.766 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.041 -23.816 -4.580 26.647 hybrid contribution 0.410 1.664 -0.095 1.716 sum 11.451 -22.152 -4.674 25.371 Atomic orbital electron populations 1.70190 1.08340 1.27731 1.51548 1.26141 0.95713 1.03965 0.94639 0.85269 0.79348 0.78073 0.77524 1.17510 1.20674 1.20662 1.21740 0.94032 0.91525 1.50660 0.90491 1.18697 0.93720 0.92498 0.94715 1.21651 0.99365 0.89932 1.04932 1.21369 0.87851 0.86634 0.74012 1.90661 1.16662 1.88324 1.50903 1.45856 1.10592 1.04715 1.76044 1.21987 0.95142 0.82672 1.02352 1.20949 0.88540 0.95281 0.82064 1.86579 1.63216 1.44594 1.41754 1.22342 1.01140 0.93980 0.96617 1.21130 0.95331 1.01543 0.93796 1.20791 0.97365 0.97380 0.94636 1.20941 0.95964 1.00559 0.96252 1.21442 0.96630 0.95531 1.00137 1.21378 1.00704 0.99160 0.93457 1.20845 0.94941 0.98818 0.98229 1.21149 0.97431 0.98505 0.97398 0.92875 1.00040 0.99864 0.87430 0.87830 0.75340 0.91265 0.91705 0.76576 0.88756 0.88596 0.88067 0.89364 0.84293 0.83670 0.83818 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.72 13.29 21.45 0.28 -59.43 16 2 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 3 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 4 H -0.25 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.31 4.26 29.85 0.13 2.44 16 10 C -0.12 -4.76 5.64 29.85 0.17 -4.59 16 11 C 0.51 19.96 7.83 87.66 0.69 20.65 16 12 O -0.59 -29.12 15.98 -3.04 -0.05 -29.17 16 13 N -0.72 -19.56 5.09 -463.07 -2.36 -21.92 16 14 C 0.10 2.62 4.77 86.38 0.41 3.03 16 15 C 0.17 3.44 0.98 -10.87 -0.01 3.43 16 16 O -0.55 -11.02 13.05 -148.98 -1.94 -12.97 16 17 C -0.10 -1.68 6.32 31.51 0.20 -1.48 16 18 C -0.08 -1.20 6.76 30.52 0.21 -0.99 16 19 C -0.10 -1.89 6.14 -19.60 -0.12 -2.01 16 20 C -0.12 -1.98 10.04 22.30 0.22 -1.76 16 21 C -0.12 -1.88 10.05 22.24 0.22 -1.66 16 22 C -0.13 -2.13 10.05 22.24 0.22 -1.91 16 23 C -0.11 -1.99 9.08 22.30 0.20 -1.78 16 24 C -0.14 -2.87 4.83 -19.59 -0.09 -2.96 16 25 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 26 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 27 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 28 H 0.11 3.70 8.14 -2.38 -0.02 3.68 16 29 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.41 8.31 5.52 -92.71 -0.51 7.80 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.38 5.69 8.08 -74.05 -0.60 5.09 16 34 H 0.09 1.46 8.11 -2.39 -0.02 1.44 16 35 H 0.10 1.41 7.90 -2.39 -0.02 1.39 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.13 1.82 6.98 -2.91 -0.02 1.80 16 Total: -1.00 -79.56 341.44 1.04 -78.53 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.07 Total: 18.82 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 3.14 Total: -20.11 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -2.07 Total: -81.35 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.99 Total: -42.14 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -79.56 1.04 -78.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291952525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.179 kcal (2) G-P(sol) polarization free energy of solvation -79.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds