Wall clock time and date at job start Tue Mar 31 2020 06:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00139 * 2 1 4 4 H 1.48492 * 109.47603 * 240.00502 * 3 2 1 5 5 H 1.48504 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46721 * 120.00393 * 3 2 1 7 7 C 1.37880 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99943 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99655 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46684 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47178 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99653 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00502 * 180.02562 * 11 10 9 14 14 C 1.47227 * 121.32190 * 5.14521 * 13 11 10 15 15 C 1.52780 * 107.93248 * 115.91396 * 14 13 11 16 16 C 1.50598 * 110.85711 * 47.51597 * 15 14 13 17 17 C 1.38977 * 117.63232 * 160.08970 * 16 15 14 18 18 C 1.37907 * 120.57708 * 178.77768 * 17 16 15 19 19 C 1.38256 * 119.83181 * 0.02562 * 18 17 16 20 20 C 1.37961 * 119.71805 * 0.27264 * 19 18 17 21 21 C 1.37677 * 122.84694 * 339.40336 * 16 15 14 22 22 C 1.46678 * 121.32525 * 185.17340 * 13 11 10 23 23 H 1.09004 * 109.40303 * 104.43387 * 22 13 11 24 24 C 1.52994 * 109.43830 * 344.54288 * 22 13 11 25 25 O 1.42898 * 109.47115 * 298.63124 * 24 22 13 26 26 H 0.96999 * 119.99428 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47232 * 60.00362 * 9 7 2 28 28 H 1.08992 * 109.47267 * 299.99578 * 9 7 2 29 29 H 1.08999 * 109.47581 * 59.99937 * 10 9 7 30 30 H 1.09000 * 109.47065 * 299.99541 * 10 9 7 31 31 H 1.08993 * 109.77063 * 235.53327 * 14 13 11 32 32 H 1.09001 * 109.76633 * 356.25919 * 14 13 11 33 33 H 1.08994 * 109.20879 * 287.15633 * 15 14 13 34 34 H 1.09003 * 109.19597 * 167.86254 * 15 14 13 35 35 H 1.07999 * 119.70813 * 358.80751 * 17 16 15 36 36 H 1.08006 * 120.08476 * 180.02562 * 18 17 16 37 37 H 1.08001 * 120.14199 * 180.28508 * 19 18 17 38 38 H 1.08001 * 119.74785 * 179.70700 * 20 19 18 39 39 H 1.09005 * 109.47138 * 58.63465 * 24 22 13 40 40 H 1.09004 * 109.47321 * 178.63105 * 24 22 13 41 41 H 0.96698 * 114.00436 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4918 -4.9672 0.0001 12 8 0.2789 -4.9671 0.0010 13 7 2.1655 -6.1344 0.0007 14 6 3.6330 -6.1709 0.1136 15 6 3.9867 -6.8750 1.4226 16 6 3.2017 -8.1512 1.5741 17 6 3.6874 -9.1054 2.4602 18 6 3.0035 -10.2853 2.6648 19 6 1.8244 -10.5238 1.9834 20 6 1.3431 -9.5811 1.0986 21 6 2.0332 -8.3950 0.8881 22 6 1.4661 -7.4187 -0.1116 23 1 1.5955 -7.8147 -1.1189 24 6 -0.0242 -7.2129 0.1667 25 8 -0.1968 -6.7212 1.4973 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8719 -3.6044 0.8894 30 1 2.8718 -3.6043 -0.8906 31 1 4.0538 -6.7223 -0.7271 32 1 4.0275 -5.1548 0.1224 33 1 3.7599 -6.2132 2.2584 34 1 5.0519 -7.1065 1.4285 35 1 4.6083 -8.9210 2.9935 36 1 3.3880 -11.0212 3.3555 37 1 1.2823 -11.4442 2.1432 38 1 0.4245 -9.7690 0.5625 39 1 -0.4302 -6.4918 -0.5427 40 1 -0.5484 -8.1626 0.0596 41 1 -1.1192 -6.5669 1.7431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292163446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:08 Heat of formation + Delta-G solvation = -48.589210 kcal Electronic energy + Delta-G solvation = -23385.067272 eV Core-core repulsion = 20037.115803 eV Total energy + Delta-G solvation = -3347.951468 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66602 -38.79484 -36.21892 -35.83666 -33.48113 -32.88026 -31.79710 -30.68791 -29.47787 -27.29649 -25.57376 -24.23541 -23.40658 -21.78432 -21.37495 -20.21331 -18.19874 -17.35759 -17.15124 -16.47389 -15.90156 -15.59457 -15.46345 -14.64934 -14.55085 -14.35209 -14.13268 -13.82929 -13.42803 -13.25813 -13.08581 -12.90211 -12.49275 -12.15688 -12.08778 -12.00970 -11.56651 -11.44919 -11.11096 -10.90109 -10.89097 -10.61068 -10.56993 -9.95215 -9.80257 -9.49258 -9.08603 -8.87726 -8.62454 -8.42831 -8.29971 -8.22207 -5.94200 -3.98254 1.32408 1.32849 3.20343 3.35225 3.35827 3.40316 3.42211 3.69213 4.42661 4.49325 4.59434 4.71472 4.82425 4.94367 5.03576 5.15653 5.23608 5.34497 5.36585 5.40774 5.52036 5.57855 5.65039 5.69483 5.77660 5.88156 5.92425 6.08873 6.12410 6.25459 6.30088 6.37464 6.44330 6.56009 6.81919 6.93839 6.97357 7.76423 7.84714 7.90147 8.06935 8.09865 8.41703 8.86328 9.10251 9.64992 11.16726 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029334 B = 0.003814 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.301190 B = 7340.516912 C = 7912.719134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.040 3.960 10 C -0.128 4.128 11 C 0.523 3.477 12 O -0.516 6.516 13 N -0.618 5.618 14 C 0.110 3.890 15 C -0.099 4.099 16 C -0.065 4.065 17 C -0.122 4.122 18 C -0.124 4.124 19 C -0.125 4.125 20 C -0.110 4.110 21 C -0.071 4.071 22 C 0.186 3.814 23 H 0.087 0.913 24 C 0.077 3.923 25 O -0.552 6.552 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.024 0.976 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.027 0.973 41 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.712 -21.282 1.697 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.168 4.168 11 C 0.314 3.686 12 O -0.392 6.392 13 N -0.354 5.354 14 C -0.013 4.013 15 C -0.137 4.137 16 C -0.065 4.065 17 C -0.140 4.140 18 C -0.142 4.142 19 C -0.143 4.143 20 C -0.128 4.128 21 C -0.072 4.072 22 C 0.082 3.918 23 H 0.105 0.895 24 C -0.001 4.001 25 O -0.356 6.356 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.109 0.891 40 H 0.044 0.956 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 6.528 -21.156 1.688 22.204 hybrid contribution -0.029 0.733 0.155 0.750 sum 6.499 -20.422 1.843 21.511 Atomic orbital electron populations 1.69987 1.06040 1.26626 1.50223 1.25013 0.94817 0.99162 0.95335 0.86666 0.79562 0.83241 0.78533 1.20266 1.21309 1.20261 1.21192 0.92867 0.91083 1.51371 0.92733 1.18875 0.93132 0.89262 0.98514 1.21886 1.00740 0.92068 1.02060 1.21366 0.88373 0.84870 0.73990 1.90528 1.14255 1.86186 1.48182 1.48158 1.06659 1.05115 1.75457 1.21660 0.80648 1.02407 0.96607 1.20854 0.99122 0.94299 0.99382 1.19472 0.94930 0.95639 0.96466 1.21139 1.00268 0.94050 0.98573 1.21004 0.95821 0.97386 0.99997 1.20994 0.96640 0.99231 0.97456 1.21009 0.99396 0.93439 0.98965 1.19761 0.94491 0.94987 0.97990 1.20067 0.92104 0.83275 0.96336 0.89504 1.22576 0.93008 0.96667 0.87834 1.86475 1.31041 1.88376 1.29709 0.92946 0.95945 0.95801 0.90491 0.90468 0.91252 0.88360 0.89869 0.89897 0.86287 0.86362 0.86290 0.86247 0.89055 0.95556 0.78151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.46 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.04 1.07 4.26 -27.88 -0.12 0.95 16 10 C -0.13 -2.64 4.03 -27.88 -0.11 -2.75 16 11 C 0.52 10.28 7.33 -10.99 -0.08 10.20 16 12 O -0.52 -11.56 10.91 -18.08 -0.20 -11.76 16 13 N -0.62 -9.63 2.90 -166.79 -0.48 -10.12 16 14 C 0.11 1.33 6.36 -3.76 -0.02 1.31 16 15 C -0.10 -1.12 5.87 -28.05 -0.16 -1.28 16 16 C -0.06 -0.82 5.76 -104.60 -0.60 -1.42 16 17 C -0.12 -1.35 9.59 -39.43 -0.38 -1.73 16 18 C -0.12 -1.28 10.04 -39.70 -0.40 -1.67 16 19 C -0.13 -1.31 10.05 -39.68 -0.40 -1.71 16 20 C -0.11 -1.29 9.07 -39.46 -0.36 -1.65 16 21 C -0.07 -0.95 5.06 -104.56 -0.53 -1.48 16 22 C 0.19 2.63 3.29 -68.94 -0.23 2.40 16 23 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 24 C 0.08 1.15 5.39 37.15 0.20 1.35 16 25 O -0.55 -9.37 11.32 -58.86 -0.67 -10.04 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 30 H 0.08 1.45 7.98 -51.93 -0.41 1.04 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.15 6.05 -51.93 -0.31 0.83 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.12 1.06 8.05 -52.49 -0.42 0.64 16 36 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.22 6.70 -52.49 -0.35 0.87 16 39 H 0.09 1.57 5.77 -52.34 -0.30 1.27 16 40 H 0.03 0.32 6.68 -51.93 -0.35 -0.02 16 41 H 0.37 5.20 9.12 45.56 0.42 5.61 16 LS Contribution 328.88 15.07 4.96 4.96 Total: -1.00 -34.70 328.88 -9.33 -44.03 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.05 Total: 4.13 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -3.60 Total: -11.17 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.25 Total: -36.84 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.86 Total: -21.80 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.70 -9.33 -44.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292163446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.561 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds