Wall clock time and date at job start Tue Mar 31 2020 06:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00139 * 2 1 4 4 H 1.48492 * 109.47603 * 240.00502 * 3 2 1 5 5 H 1.48504 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46721 * 120.00393 * 3 2 1 7 7 C 1.37880 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99943 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99655 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46684 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47178 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99653 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00502 * 180.02562 * 11 10 9 14 14 C 1.47227 * 121.32190 * 5.14521 * 13 11 10 15 15 C 1.52780 * 107.93248 * 115.91396 * 14 13 11 16 16 C 1.50598 * 110.85711 * 47.51597 * 15 14 13 17 17 C 1.38977 * 117.63232 * 160.08970 * 16 15 14 18 18 C 1.37907 * 120.57708 * 178.77768 * 17 16 15 19 19 C 1.38256 * 119.83181 * 0.02562 * 18 17 16 20 20 C 1.37961 * 119.71805 * 0.27264 * 19 18 17 21 21 C 1.37677 * 122.84694 * 339.40336 * 16 15 14 22 22 C 1.46678 * 121.32525 * 185.17340 * 13 11 10 23 23 H 1.09004 * 109.40303 * 104.43387 * 22 13 11 24 24 C 1.52994 * 109.43830 * 344.54288 * 22 13 11 25 25 O 1.42898 * 109.47115 * 298.63124 * 24 22 13 26 26 H 0.96999 * 119.99428 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47232 * 60.00362 * 9 7 2 28 28 H 1.08992 * 109.47267 * 299.99578 * 9 7 2 29 29 H 1.08999 * 109.47581 * 59.99937 * 10 9 7 30 30 H 1.09000 * 109.47065 * 299.99541 * 10 9 7 31 31 H 1.08993 * 109.77063 * 235.53327 * 14 13 11 32 32 H 1.09001 * 109.76633 * 356.25919 * 14 13 11 33 33 H 1.08994 * 109.20879 * 287.15633 * 15 14 13 34 34 H 1.09003 * 109.19597 * 167.86254 * 15 14 13 35 35 H 1.07999 * 119.70813 * 358.80751 * 17 16 15 36 36 H 1.08006 * 120.08476 * 180.02562 * 18 17 16 37 37 H 1.08001 * 120.14199 * 180.28508 * 19 18 17 38 38 H 1.08001 * 119.74785 * 179.70700 * 20 19 18 39 39 H 1.09005 * 109.47138 * 58.63465 * 24 22 13 40 40 H 1.09004 * 109.47321 * 178.63105 * 24 22 13 41 41 H 0.96698 * 114.00436 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4918 -4.9672 0.0001 12 8 0.2789 -4.9671 0.0010 13 7 2.1655 -6.1344 0.0007 14 6 3.6330 -6.1709 0.1136 15 6 3.9867 -6.8750 1.4226 16 6 3.2017 -8.1512 1.5741 17 6 3.6874 -9.1054 2.4602 18 6 3.0035 -10.2853 2.6648 19 6 1.8244 -10.5238 1.9834 20 6 1.3431 -9.5811 1.0986 21 6 2.0332 -8.3950 0.8881 22 6 1.4661 -7.4187 -0.1116 23 1 1.5955 -7.8147 -1.1189 24 6 -0.0242 -7.2129 0.1667 25 8 -0.1968 -6.7212 1.4973 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8719 -3.6044 0.8894 30 1 2.8718 -3.6043 -0.8906 31 1 4.0538 -6.7223 -0.7271 32 1 4.0275 -5.1548 0.1224 33 1 3.7599 -6.2132 2.2584 34 1 5.0519 -7.1065 1.4285 35 1 4.6083 -8.9210 2.9935 36 1 3.3880 -11.0212 3.3555 37 1 1.2823 -11.4442 2.1432 38 1 0.4245 -9.7690 0.5625 39 1 -0.4302 -6.4918 -0.5427 40 1 -0.5484 -8.1626 0.0596 41 1 -1.1192 -6.5669 1.7431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292163446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:07 Heat of formation + Delta-G solvation = -71.024929 kcal Electronic energy + Delta-G solvation = -23386.040157 eV Core-core repulsion = 20037.115803 eV Total energy + Delta-G solvation = -3348.924354 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.80047 -39.96158 -37.49979 -36.98683 -35.54396 -33.92999 -33.23979 -32.24384 -30.42347 -28.56752 -27.36529 -25.39824 -24.46701 -23.41246 -22.36351 -21.48189 -19.56979 -18.72986 -18.50531 -17.96575 -17.25183 -16.73644 -16.63338 -16.43967 -15.80092 -15.52341 -15.40121 -14.91459 -14.66609 -14.53282 -14.27585 -14.13944 -13.91504 -13.70241 -13.35909 -13.09600 -13.01733 -12.77458 -12.53109 -12.49297 -12.33880 -11.91488 -11.85457 -11.61070 -11.51776 -11.28476 -11.07250 -10.54671 -9.95949 -9.61069 -9.51265 -9.44846 -8.16775 -6.30621 0.47094 0.50208 1.42294 1.46883 1.54442 1.78768 2.03252 2.44035 2.85310 3.16071 3.34174 3.63782 3.77961 3.94967 4.00255 4.13530 4.16395 4.29474 4.33532 4.43530 4.48138 4.53394 4.56814 4.61902 4.68006 4.77767 4.84113 4.89940 5.01802 5.09338 5.15502 5.25020 5.47773 5.51832 5.63288 5.64841 5.66400 5.79231 5.86733 6.13973 6.19528 6.49891 6.87571 6.90973 7.38020 7.41177 8.95589 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029334 B = 0.003814 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.301190 B = 7340.516912 C = 7912.719134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.973 3.027 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.049 3.951 10 C -0.116 4.116 11 C 0.518 3.482 12 O -0.556 6.556 13 N -0.610 5.610 14 C 0.101 3.899 15 C -0.095 4.095 16 C -0.085 4.085 17 C -0.128 4.128 18 C -0.126 4.126 19 C -0.129 4.129 20 C -0.121 4.121 21 C -0.092 4.092 22 C 0.181 3.819 23 H 0.105 0.895 24 C 0.078 3.922 25 O -0.573 6.573 26 H 0.262 0.738 27 H -0.017 1.017 28 H -0.020 1.020 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.128 0.872 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.571 -22.612 2.064 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.092 0.908 9 C 0.011 3.989 10 C -0.155 4.155 11 C 0.308 3.692 12 O -0.435 6.435 13 N -0.344 5.344 14 C -0.020 4.020 15 C -0.132 4.132 16 C -0.085 4.085 17 C -0.146 4.146 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.139 4.139 21 C -0.093 4.093 22 C 0.078 3.922 23 H 0.123 0.877 24 C 0.001 3.999 25 O -0.379 6.379 26 H 0.071 0.929 27 H 0.002 0.998 28 H -0.002 1.002 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.146 0.854 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 9.438 -22.533 2.054 24.516 hybrid contribution -0.947 1.021 0.063 1.394 sum 8.491 -21.511 2.118 23.223 Atomic orbital electron populations 1.70170 1.08270 1.27803 1.51435 1.26116 0.95717 1.03849 0.94624 0.85394 0.78091 0.77415 0.79470 1.18604 1.21325 1.18798 1.21685 0.93932 0.91704 1.50876 0.90785 1.18624 0.93520 0.92184 0.94534 1.21629 0.99373 0.90645 1.03877 1.21122 0.87872 0.85831 0.74385 1.90542 1.15756 1.86949 1.50248 1.48074 1.08266 1.04471 1.73611 1.21998 0.78301 1.03412 0.98328 1.20850 1.00938 0.93456 0.97964 1.19715 0.95149 0.96531 0.97146 1.21426 1.01093 0.93917 0.98179 1.21394 0.95494 0.97630 0.99861 1.21335 0.96873 0.99758 0.96684 1.21198 0.99774 0.93370 0.99569 1.19760 0.95405 0.95375 0.98718 1.20248 0.91350 0.82735 0.97887 0.87718 1.22554 0.94201 0.96975 0.86171 1.86428 1.31988 1.88733 1.30744 0.92896 0.99821 1.00205 0.88895 0.88173 0.88643 0.87908 0.91556 0.86667 0.84248 0.83778 0.83950 0.85364 0.92051 0.92630 0.77308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.81 13.29 21.45 0.28 -59.53 16 2 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 3 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.05 2.77 4.26 29.85 0.13 2.90 16 10 C -0.12 -4.83 4.03 29.85 0.12 -4.71 16 11 C 0.52 20.91 7.33 87.66 0.64 21.55 16 12 O -0.56 -26.45 10.91 19.55 0.21 -26.23 16 13 N -0.61 -18.74 2.90 -799.98 -2.32 -21.06 16 14 C 0.10 2.25 6.36 86.17 0.55 2.80 16 15 C -0.09 -1.93 5.87 29.74 0.17 -1.76 16 16 C -0.09 -1.97 5.76 -19.85 -0.11 -2.09 16 17 C -0.13 -2.47 9.59 22.37 0.21 -2.26 16 18 C -0.13 -2.20 10.04 22.20 0.22 -1.97 16 19 C -0.13 -2.35 10.05 22.21 0.22 -2.13 16 20 C -0.12 -2.62 9.07 22.35 0.20 -2.42 16 21 C -0.09 -2.30 5.06 -19.82 -0.10 -2.40 16 22 C 0.18 5.01 3.29 44.24 0.15 5.15 16 23 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 24 C 0.08 2.39 5.39 71.98 0.39 2.78 16 25 O -0.57 -20.18 11.32 -126.38 -1.43 -21.61 16 26 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 27 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 28 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 29 H 0.09 3.55 7.71 -2.39 -0.02 3.54 16 30 H 0.10 3.68 7.98 -2.39 -0.02 3.67 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.10 2.17 6.05 -2.39 -0.01 2.15 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.12 1.58 8.10 -2.39 -0.02 1.56 16 35 H 0.14 2.01 8.05 -2.91 -0.02 1.99 16 36 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.13 2.41 6.70 -2.91 -0.02 2.39 16 39 H 0.06 2.25 5.77 -8.89 -0.05 2.20 16 40 H 0.06 1.34 6.68 -2.38 -0.02 1.32 16 41 H 0.38 11.31 9.12 -74.06 -0.68 10.63 16 Total: -1.00 -78.60 328.88 2.59 -76.01 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.33 Total: 21.35 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 3.49 Total: -15.52 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -2.03 Total: -80.59 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -1.22 Total: -47.84 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -78.60 2.59 -76.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292163446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.987 kcal (2) G-P(sol) polarization free energy of solvation -78.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds