Wall clock time and date at job start Tue Mar 31 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47120 * 2 1 4 4 C 1.53002 * 109.47017 * 120.00616 * 2 1 3 5 5 C 1.50703 * 109.46378 * 184.99730 * 4 2 1 6 6 H 1.07993 * 120.00874 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99297 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00295 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99591 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46855 * 60.00158 * 9 7 5 11 11 H 1.48498 * 109.46798 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47157 * 300.00001 * 9 7 5 13 13 N 1.46906 * 109.46413 * 240.00378 * 2 1 3 14 14 C 1.46899 * 111.00050 * 85.00080 * 13 2 1 15 15 H 1.08995 * 109.46986 * 324.99845 * 14 13 2 16 16 C 1.53004 * 109.47114 * 84.99566 * 14 13 2 17 17 C 1.50690 * 109.47001 * 204.99624 * 14 13 2 18 18 C 1.31827 * 124.30089 * 140.31526 * 17 14 13 19 19 C 1.45389 * 114.89668 * 180.22144 * 18 17 14 20 20 C 1.41175 * 129.34342 * 179.79761 * 19 18 17 21 21 C 1.36086 * 120.45617 * 179.67385 * 20 19 18 22 22 C 1.38850 * 120.59453 * 0.02562 * 21 20 19 23 23 C 1.37467 * 120.18672 * 0.02562 * 22 21 20 24 24 C 1.39744 * 111.82614 * 359.51062 * 19 18 17 25 25 S 1.75301 * 124.30179 * 320.02424 * 17 14 13 26 26 H 1.09000 * 109.47439 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46607 * 299.99527 * 1 2 3 28 28 H 1.08994 * 109.47531 * 59.99081 * 1 2 3 29 29 H 1.08997 * 109.46731 * 304.99543 * 4 2 1 30 30 H 1.08996 * 109.47021 * 64.99478 * 4 2 1 31 31 H 0.96993 * 120.00018 * 180.02562 * 8 7 5 32 32 H 1.00900 * 110.99671 * 208.95518 * 13 2 1 33 33 H 1.08999 * 109.47103 * 59.99764 * 16 14 13 34 34 H 1.08996 * 109.47299 * 180.02562 * 16 14 13 35 35 H 1.09004 * 109.46963 * 300.00014 * 16 14 13 36 36 H 1.08005 * 122.55247 * 0.04066 * 18 17 14 37 37 H 1.08001 * 119.76475 * 359.69215 * 20 19 18 38 38 H 1.08002 * 119.70375 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.90587 * 180.02562 * 22 21 20 40 40 H 1.07997 * 119.90686 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5420 -0.6150 1.3125 6 1 4.0791 -0.0863 0.5391 7 6 4.2304 -1.1929 2.3581 8 7 3.5765 -1.8373 3.2998 9 14 6.0922 -1.0617 2.4363 10 1 6.4856 0.3691 2.4949 11 1 6.5872 -1.7618 3.6488 12 1 6.6838 -1.6887 1.2271 13 7 2.0196 -0.6925 -1.1996 14 6 2.0823 0.2227 -2.3470 15 1 1.2576 0.9330 -2.2906 16 6 3.4110 0.9810 -2.3225 17 6 1.9784 -0.5675 -3.6259 18 6 1.2935 -0.1814 -4.6841 19 6 1.3286 -1.1050 -5.8063 20 6 0.7096 -1.0010 -7.0708 21 6 0.8709 -1.9816 -8.0006 22 6 1.6455 -3.0996 -7.7214 23 6 2.2590 -3.2275 -6.4979 24 6 2.1078 -2.2313 -5.5281 25 16 2.7588 -2.1134 -3.8983 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 1.6055 -0.2619 2.1369 30 1 1.7516 -1.7716 1.2054 31 1 4.0608 -2.2434 4.0355 32 1 2.9172 -1.1205 -1.0289 33 1 4.2358 0.2706 -2.3787 34 1 3.4574 1.6603 -3.1735 35 1 3.4862 1.5525 -1.3973 36 1 0.7455 0.7488 -4.7140 37 1 0.1041 -0.1371 -7.3019 38 1 0.3920 -1.8893 -8.9642 39 1 1.7663 -3.8709 -8.4677 40 1 2.8602 -4.0991 -6.2855 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298945806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:18 Heat of formation + Delta-G solvation = 25.318885 kcal Electronic energy + Delta-G solvation = -20040.030684 eV Core-core repulsion = 17138.036982 eV Total energy + Delta-G solvation = -2901.993702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.48142 -37.67012 -35.23156 -33.11810 -31.81816 -31.01930 -28.79845 -27.54993 -27.40180 -23.95170 -23.31474 -22.87431 -21.21530 -20.12681 -19.30168 -17.75489 -16.36726 -15.91069 -15.60287 -15.19636 -14.76628 -14.49410 -14.21232 -13.76345 -13.69366 -13.48284 -12.98972 -12.75426 -12.65652 -12.04987 -11.84127 -11.74003 -11.57653 -11.34209 -11.26110 -11.02724 -10.95643 -10.81104 -10.71250 -10.48584 -10.34897 -10.22891 -9.63674 -9.30358 -9.10000 -8.42287 -8.34939 -7.78977 -7.56385 -6.04459 -4.07980 0.79882 1.21394 1.68045 2.22997 2.36647 3.29405 3.34843 3.36281 3.69933 4.41334 4.45552 4.74877 4.84849 4.94291 5.14289 5.23930 5.32489 5.34256 5.38483 5.50835 5.67356 5.78812 5.86658 5.92243 5.92752 6.05235 6.10479 6.18284 6.26789 6.29483 6.39335 6.41682 6.52188 6.56407 6.81456 6.89730 6.91060 7.45904 7.60549 7.93635 7.98430 8.16588 8.33912 8.97910 9.56400 11.06364 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.003896 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.589581 B = 7184.447863 C = 7726.837732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.089 3.911 3 H 0.033 0.967 4 C 0.021 3.979 5 C -0.526 4.526 6 H 0.052 0.948 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.676 5.676 14 C 0.144 3.856 15 H 0.090 0.910 16 C -0.177 4.177 17 C -0.112 4.112 18 C -0.147 4.147 19 C -0.066 4.066 20 C -0.085 4.085 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.081 4.081 24 C -0.154 4.154 25 S 0.124 5.876 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.022 0.978 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.357 0.643 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.140 0.860 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.393 1.625 -20.022 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 H 0.051 0.949 4 C -0.016 4.016 5 C -0.564 4.564 6 H 0.070 0.930 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.309 5.309 14 C 0.031 3.969 15 H 0.108 0.892 16 C -0.236 4.236 17 C -0.228 4.228 18 C -0.177 4.177 19 C -0.075 4.075 20 C -0.105 4.105 21 C -0.144 4.144 22 C -0.136 4.136 23 C -0.103 4.103 24 C -0.270 4.270 25 S 0.391 5.609 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.179 0.821 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.157 0.843 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.040 0.384 -19.008 19.437 hybrid contribution 0.903 1.457 -0.485 1.782 sum -3.137 1.841 -19.493 19.830 Atomic orbital electron populations 1.21816 0.96623 1.01480 0.99475 1.21633 0.93327 0.96039 0.90999 0.94910 1.19272 0.95433 0.96242 0.90682 1.21132 0.92158 1.34747 1.08386 0.92985 1.24976 0.98157 0.95137 0.95698 1.69942 1.35619 1.35415 1.11888 0.86728 0.85997 0.78176 0.77545 1.20350 1.21248 1.20145 1.60685 1.34933 1.31165 1.04165 1.20113 0.97702 0.91985 0.87091 0.89162 1.22513 0.97682 1.01041 1.02394 1.24155 1.01074 0.98502 0.99111 1.20689 1.03958 1.01042 0.92026 1.19260 0.99208 0.93937 0.95063 1.20665 0.98996 0.99150 0.91647 1.20625 0.99920 0.94507 0.99384 1.20968 0.97990 0.98269 0.96372 1.20473 1.00139 0.97339 0.92392 1.22970 1.04662 0.99497 0.99848 1.84470 1.52296 1.18971 1.05191 0.92568 0.93218 0.94527 0.95957 0.95551 0.92862 0.82098 0.92081 0.92549 0.91218 0.84262 0.85974 0.85912 0.85659 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.40 37.16 0.35 -2.06 16 2 C 0.09 1.79 2.40 -67.71 -0.16 1.62 16 3 H 0.03 0.66 7.11 -51.93 -0.37 0.29 16 4 C 0.02 0.52 4.57 -27.88 -0.13 0.40 16 5 C -0.53 -14.09 8.12 -34.44 -0.28 -14.37 16 6 H 0.05 1.34 7.49 -52.49 -0.39 0.95 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.68 -12.65 5.76 -100.95 -0.58 -13.23 16 14 C 0.14 2.24 2.79 -68.87 -0.19 2.05 16 15 H 0.09 1.34 7.07 -51.93 -0.37 0.97 16 16 C -0.18 -2.64 9.13 37.16 0.34 -2.30 16 17 C -0.11 -1.67 5.34 -36.21 -0.19 -1.87 16 18 C -0.15 -2.01 10.19 -38.64 -0.39 -2.40 16 19 C -0.07 -0.89 6.04 -105.38 -0.64 -1.53 16 20 C -0.08 -0.94 10.05 -39.24 -0.39 -1.33 16 21 C -0.12 -1.21 9.95 -40.13 -0.40 -1.61 16 22 C -0.11 -1.14 10.03 -39.64 -0.40 -1.54 16 23 C -0.08 -0.96 10.07 -39.26 -0.40 -1.35 16 24 C -0.15 -2.16 6.48 -38.41 -0.25 -2.41 16 25 S 0.12 1.88 22.89 -107.50 -2.46 -0.58 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.04 0.57 7.43 -51.93 -0.39 0.19 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.36 7.35 6.95 -39.29 -0.27 7.08 16 33 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.10 7.43 -51.93 -0.39 0.72 16 36 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -29.22 343.73 -11.34 -40.56 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.96 Total: 4.42 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -3.23 Total: -27.05 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.15 Total: -38.68 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.46 Total: -0.58 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.22 -11.34 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298945806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.877 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds