Wall clock time and date at job start Tue Mar 31 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34945 * 126.03821 * 2 1 4 4 C 1.35319 * 107.74770 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.04107 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47088 * 340.00283 * 5 4 3 7 7 N 1.46903 * 109.46981 * 220.00382 * 5 4 3 8 8 C 1.46896 * 110.99799 * 85.00238 * 7 5 4 9 9 C 1.50699 * 109.47020 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00060 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00230 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99858 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 120.00069 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.46859 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46732 * 120.00091 * 13 11 9 16 16 H 1.48496 * 109.46878 * 239.99996 * 13 11 9 17 17 C 1.50697 * 109.46990 * 100.00237 * 5 4 3 18 18 C 1.38254 * 119.97187 * 79.72724 * 17 5 4 19 19 C 1.38197 * 120.02399 * 179.72262 * 18 17 5 20 20 C 1.38467 * 119.97193 * 0.52885 * 19 18 17 21 21 F 1.35096 * 120.02350 * 179.72327 * 20 19 18 22 22 C 1.38456 * 119.94769 * 359.74461 * 20 19 18 23 23 C 1.38193 * 119.97822 * 0.02562 * 22 20 19 24 24 C 1.39877 * 107.91756 * 0.02562 * 4 3 2 25 25 N 1.30833 * 108.20100 * 359.97438 * 24 4 3 26 26 H 1.09000 * 109.47005 * 269.99454 * 1 2 3 27 27 H 1.09003 * 109.46946 * 29.99763 * 1 2 3 28 28 H 1.09006 * 109.46968 * 149.99628 * 1 2 3 29 29 H 1.07994 * 126.12681 * 0.02720 * 3 2 1 30 30 H 1.00896 * 111.00378 * 321.04275 * 7 5 4 31 31 H 1.08998 * 109.47230 * 299.99802 * 8 7 5 32 32 H 1.09004 * 109.47418 * 59.99709 * 8 7 5 33 33 H 0.97002 * 120.00247 * 180.02562 * 12 11 9 34 34 H 1.07994 * 119.98560 * 359.97438 * 18 17 5 35 35 H 1.07996 * 120.01428 * 180.25093 * 19 18 17 36 36 H 1.08003 * 120.01211 * 179.97438 * 22 20 19 37 37 H 1.07998 * 119.98803 * 179.97438 * 23 22 20 38 38 H 1.07995 * 125.89269 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5452 -0.0013 6 1 4.4999 2.5416 -0.3528 7 7 5.7840 0.9687 -0.8921 8 6 5.5616 1.3850 -2.2832 9 6 6.6210 0.7760 -3.1652 10 1 7.3830 0.1427 -2.7353 11 6 6.6170 1.0264 -4.5210 12 7 5.6888 1.7972 -5.0445 13 14 7.9306 0.2721 -5.6141 14 1 8.8515 -0.5483 -4.7871 15 1 7.2873 -0.5883 -6.6393 16 1 8.6968 1.3529 -6.2850 17 6 5.3207 1.6378 1.3976 18 6 6.0942 0.6100 1.9041 19 6 6.6063 0.6964 3.1847 20 6 6.3353 1.8080 3.9646 21 9 6.8308 1.8910 5.2187 22 6 5.5558 2.8341 3.4582 23 6 5.0487 2.7477 2.1756 24 6 3.5346 -0.7322 -0.0015 25 7 2.2891 -1.1328 -0.0010 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.9281 2.1192 0.0004 30 1 5.8042 -0.0371 -0.8144 31 1 4.5781 1.0480 -2.6105 32 1 5.6142 2.4717 -2.3501 33 1 5.6857 1.9731 -5.9984 34 1 6.3017 -0.2589 1.2972 35 1 7.2139 -0.1048 3.5788 36 1 5.3435 3.7015 4.0658 37 1 4.4403 3.5479 1.7807 38 1 4.4054 -1.3710 -0.0018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299263909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:08 Heat of formation + Delta-G solvation = 41.177254 kcal Electronic energy + Delta-G solvation = -22161.701295 eV Core-core repulsion = 18726.474839 eV Total energy + Delta-G solvation = -3435.226456 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.79924 -42.22000 -40.02780 -37.24318 -34.88985 -33.77279 -32.26607 -31.90016 -30.73843 -28.72029 -27.37288 -25.54919 -24.22922 -23.21322 -22.53901 -21.82119 -20.85266 -18.75822 -18.44427 -17.87061 -17.20426 -16.76846 -16.50941 -16.45240 -16.14034 -15.69568 -15.40756 -15.05726 -14.84408 -14.33797 -14.28331 -14.21333 -13.89675 -13.60770 -13.51897 -13.33650 -13.18590 -12.84653 -12.78528 -12.55973 -12.33490 -11.96979 -11.82638 -11.53147 -11.22680 -10.63490 -10.33580 -9.92087 -9.53753 -9.22631 -9.04754 -8.17664 -6.26731 0.28991 0.42897 0.96898 1.42771 1.43813 1.56875 1.72641 1.84074 2.43151 2.76025 3.16660 3.40047 3.53451 3.71946 3.92400 4.00085 4.06768 4.17737 4.31126 4.42636 4.44671 4.46067 4.58333 4.66456 4.68189 4.89987 5.03906 5.10029 5.17622 5.22783 5.26881 5.36550 5.45530 5.64527 5.66159 5.76790 6.05361 6.09721 6.16767 6.52221 6.70676 6.80223 6.96290 7.43611 8.93718 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.005175 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.055169 B = 5409.397317 C = 7247.445340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.379 5.379 3 C 0.064 3.936 4 C -0.266 4.266 5 C 0.205 3.795 6 H 0.080 0.920 7 N -0.670 5.670 8 C 0.218 3.782 9 C -0.529 4.529 10 H 0.063 0.937 11 C 0.004 3.996 12 N -0.933 5.933 13 Si 0.965 3.035 14 H -0.263 1.263 15 H -0.281 1.281 16 H -0.280 1.280 17 C -0.065 4.065 18 C -0.076 4.076 19 C -0.157 4.157 20 C 0.069 3.931 21 F -0.151 7.151 22 C -0.151 4.151 23 C -0.091 4.091 24 C 0.047 3.953 25 N -0.330 5.330 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.087 0.913 29 H 0.204 0.796 30 H 0.334 0.666 31 H -0.039 1.039 32 H 0.002 0.998 33 H 0.263 0.737 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.124 0.461 15.691 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.162 5.162 3 C -0.084 4.084 4 C -0.279 4.279 5 C 0.094 3.906 6 H 0.098 0.902 7 N -0.300 5.300 8 C 0.091 3.909 9 C -0.568 4.568 10 H 0.082 0.918 11 C -0.194 4.194 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.187 1.187 15 H -0.207 1.207 16 H -0.205 1.205 17 C -0.066 4.066 18 C -0.095 4.095 19 C -0.176 4.176 20 C 0.050 3.950 21 F -0.130 7.130 22 C -0.170 4.170 23 C -0.109 4.109 24 C -0.138 4.138 25 N -0.152 5.152 26 H 0.109 0.891 27 H 0.129 0.871 28 H 0.105 0.895 29 H 0.220 0.780 30 H 0.153 0.847 31 H -0.021 1.021 32 H 0.020 0.980 33 H 0.071 0.929 34 H 0.149 0.851 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.657 0.013 15.688 17.919 hybrid contribution 0.424 -0.158 -0.968 1.068 sum -8.234 -0.145 14.720 16.867 Atomic orbital electron populations 1.22183 0.72034 1.05713 1.04678 1.48790 1.07889 1.03225 1.56289 1.22787 0.90361 0.94612 1.00639 1.20876 0.95752 0.94351 1.16956 1.18637 0.85815 0.96593 0.89605 0.90200 1.60762 1.47014 1.14624 1.07554 1.19101 0.93300 0.94407 0.84121 1.21596 1.12723 1.29852 0.92599 0.91829 1.25844 0.98172 0.95757 0.99666 1.70085 1.35628 1.38934 1.12714 0.85392 0.78944 0.78220 0.78400 1.18658 1.20739 1.20538 1.19912 0.97142 0.94667 0.94884 1.20878 0.95535 0.99057 0.93981 1.21267 1.03028 0.98376 0.94931 1.17892 0.99509 0.97310 0.80312 1.91450 1.86283 1.96618 1.38600 1.21256 0.99431 0.99191 0.97119 1.21059 0.99249 0.97720 0.92885 1.23776 0.95354 0.95107 0.99558 1.77212 1.02088 1.09829 1.26114 0.89065 0.87065 0.89467 0.77975 0.84738 1.02124 0.98027 0.92862 0.85102 0.83703 0.82889 0.83256 0.79988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 11.47 127.77 1.47 2.95 16 2 N -0.38 -10.14 4.01 -369.56 -1.48 -11.62 16 3 C 0.06 1.69 11.40 83.54 0.95 2.65 16 4 C -0.27 -8.35 4.82 -20.14 -0.10 -8.45 16 5 C 0.21 6.73 2.63 43.42 0.11 6.84 16 6 H 0.08 2.68 7.65 -2.39 -0.02 2.67 16 7 N -0.67 -27.11 5.69 -503.39 -2.87 -29.98 16 8 C 0.22 11.26 5.23 85.56 0.45 11.71 16 9 C -0.53 -29.60 9.32 25.60 0.24 -29.36 16 10 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 11 C 0.00 0.21 5.46 84.66 0.46 0.67 16 12 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 13 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 14 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 C -0.07 -1.85 4.94 -19.86 -0.10 -1.95 16 18 C -0.08 -2.11 9.31 22.26 0.21 -1.90 16 19 C -0.16 -3.99 10.03 22.31 0.22 -3.77 16 20 C 0.07 1.75 7.30 22.38 0.16 1.91 16 21 F -0.15 -3.89 17.27 44.97 0.78 -3.11 16 22 C -0.15 -3.44 10.03 22.31 0.22 -3.22 16 23 C -0.09 -2.18 9.67 22.26 0.22 -1.96 16 24 C 0.05 1.55 11.15 85.24 0.95 2.50 16 25 N -0.33 -10.88 12.57 -57.02 -0.72 -11.60 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 28 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.20 3.80 8.06 -2.91 -0.02 3.78 16 30 H 0.33 12.95 6.49 -89.70 -0.58 12.37 16 31 H -0.04 -2.21 8.00 -2.39 -0.02 -2.22 16 32 H 0.00 0.09 8.06 -2.38 -0.02 0.07 16 33 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.13 3.54 7.25 -2.91 -0.02 3.52 16 35 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.15 2.86 8.04 -2.91 -0.02 2.83 16 38 H 0.18 5.44 7.42 -2.91 -0.02 5.42 16 Total: -1.00 -70.30 334.08 3.98 -66.32 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.49 Total: 20.63 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 5.47 Total: -21.38 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -4.78 Total: -108.69 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -70.30 3.98 -66.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299263909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.492 kcal (2) G-P(sol) polarization free energy of solvation -70.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds