Wall clock time and date at job start Tue Mar 31 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81397 * 109.47139 * 2 1 4 4 C 1.81400 * 103.00229 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.01301 * 54.29451 * 4 3 2 6 6 C 1.54261 * 110.02954 * 292.90528 * 4 3 2 7 7 C 1.55014 * 104.13579 * 217.06433 * 6 4 3 8 8 C 1.54884 * 102.75228 * 37.95313 * 7 6 4 9 9 C 1.53873 * 110.03487 * 175.68684 * 4 3 2 10 10 H 1.09002 * 110.03414 * 238.61754 * 9 4 3 11 11 N 1.46905 * 110.02826 * 359.97438 * 9 4 3 12 12 C 1.46898 * 110.99916 * 275.11128 * 11 9 4 13 13 C 1.53001 * 109.47030 * 180.02562 * 12 11 9 14 14 C 1.52992 * 109.47356 * 180.02562 * 13 12 11 15 15 S 1.81000 * 109.47302 * 179.97438 * 14 13 12 16 16 C 1.76205 * 100.00023 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00031 * 0.02562 * 16 15 14 18 18 C 1.38801 * 119.99914 * 179.97438 * 16 15 14 19 19 N 1.31629 * 119.99711 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00098 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46854 * 89.99868 * 20 18 16 22 22 H 1.48499 * 109.47559 * 210.00393 * 20 18 16 23 23 H 1.48509 * 109.46896 * 330.00660 * 20 18 16 24 24 H 1.08993 * 109.47280 * 300.00496 * 1 2 3 25 25 H 1.09005 * 109.46670 * 60.01065 * 1 2 3 26 26 H 1.09002 * 109.47255 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47549 * 239.99608 * 2 1 3 28 28 H 1.09007 * 109.46950 * 119.99655 * 2 1 3 29 29 H 1.08996 * 110.49020 * 335.73769 * 6 4 3 30 30 H 1.09006 * 110.48832 * 98.38001 * 6 4 3 31 31 H 1.09002 * 110.76487 * 279.62682 * 7 6 4 32 32 H 1.09007 * 110.90151 * 156.33493 * 7 6 4 33 33 H 1.09003 * 110.48476 * 203.36525 * 8 7 6 34 34 H 1.08998 * 110.60012 * 80.77976 * 8 7 6 35 35 H 1.00899 * 111.00407 * 39.07291 * 11 9 4 36 36 H 1.09002 * 109.47329 * 300.00199 * 12 11 9 37 37 H 1.09002 * 109.46928 * 60.00813 * 12 11 9 38 38 H 1.08998 * 109.47173 * 300.00909 * 13 12 11 39 39 H 1.09003 * 109.47102 * 60.00087 * 13 12 11 40 40 H 1.09002 * 109.47157 * 300.00095 * 14 13 12 41 41 H 1.09003 * 109.46952 * 59.99986 * 14 13 12 42 42 H 0.97006 * 119.99540 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2408 0.8698 -0.8307 6 6 4.3980 0.8860 1.3361 7 6 5.7429 1.5951 1.6384 8 6 5.4784 3.0459 1.1652 9 6 4.6234 2.8788 -0.1078 10 1 5.2602 2.9090 -0.9920 11 7 3.6125 3.9422 -0.1802 12 6 3.1511 4.1370 -1.5612 13 6 2.1021 5.2502 -1.5962 14 6 1.6211 5.4526 -3.0344 15 16 0.3795 6.7690 -3.0757 16 6 0.0112 6.7883 -4.7987 17 1 0.5151 6.1050 -5.4663 18 6 -0.9272 7.6809 -5.2979 19 7 -1.5416 8.5133 -4.4841 20 14 -1.3171 7.7019 -7.1246 21 1 -2.4306 6.7600 -7.4039 22 1 -1.7157 9.0738 -7.5300 23 1 -0.1148 7.2885 -7.8921 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.6724 1.0920 2.1229 30 1 4.5485 -0.1880 1.2264 31 1 6.5544 1.1442 1.0671 32 1 5.9640 1.5711 2.7055 33 1 6.4172 3.5479 0.9310 34 1 4.9283 3.6025 1.9239 35 1 2.8376 3.7471 0.4359 36 1 3.9964 4.4148 -2.1909 37 1 2.7111 3.2109 -1.9312 38 1 1.2568 4.9728 -0.9663 39 1 2.5424 6.1761 -1.2262 40 1 2.4662 5.7298 -3.6645 41 1 1.1806 4.5265 -3.4039 42 1 -2.1972 9.1374 -4.8330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336775227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:02 Heat of formation + Delta-G solvation = -29.900066 kcal Electronic energy + Delta-G solvation = -18570.898322 eV Core-core repulsion = 15801.954098 eV Total energy + Delta-G solvation = -2768.944224 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.94487 -35.45285 -32.99756 -32.37888 -31.83388 -29.16901 -27.42058 -25.56225 -24.12459 -23.62320 -21.36900 -20.82415 -20.24926 -17.39288 -16.68697 -16.59464 -15.50417 -15.21965 -14.95836 -14.76944 -14.69458 -14.22042 -13.92809 -13.71155 -13.15203 -12.96541 -12.62395 -12.41311 -12.20095 -11.78184 -11.72149 -11.45142 -11.35572 -11.25716 -11.17232 -11.02508 -10.98928 -10.88679 -10.69452 -10.53697 -10.27460 -9.89016 -9.42834 -8.99765 -8.42972 -8.20617 -7.71106 -6.44122 -6.16496 -3.85553 1.41503 2.35178 3.25499 3.26573 3.32955 3.64622 4.11290 4.19369 4.28963 4.45913 4.68225 4.72387 4.77606 5.04450 5.10425 5.16207 5.17913 5.19271 5.23245 5.37375 5.43743 5.47848 5.51467 5.59129 5.59709 5.64438 5.71858 5.75621 5.90988 5.92183 5.93871 6.06738 6.11224 6.26524 6.47884 6.75129 6.86637 7.13494 7.45734 7.66625 8.43016 9.29650 10.91725 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.003215 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.504263 B = 8708.357425 C = 9499.464583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 S -0.233 6.233 4 C -0.100 4.100 5 H 0.085 0.915 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.111 4.111 9 C 0.105 3.895 10 H 0.086 0.914 11 N -0.674 5.674 12 C 0.057 3.943 13 C -0.092 4.092 14 C -0.109 4.109 15 S -0.133 6.133 16 C -0.514 4.514 17 H 0.071 0.929 18 C 0.070 3.930 19 N -0.870 5.870 20 Si 0.917 3.083 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.347 0.653 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.212 -18.305 12.334 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.248 4.248 3 S -0.006 6.006 4 C -0.231 4.231 5 H 0.104 0.896 6 C -0.157 4.157 7 C -0.162 4.162 8 C -0.149 4.149 9 C -0.008 4.008 10 H 0.105 0.895 11 N -0.309 5.309 12 C -0.073 4.073 13 C -0.131 4.131 14 C -0.258 4.258 15 S 0.095 5.905 16 C -0.663 4.663 17 H 0.090 0.910 18 C -0.138 4.138 19 N -0.506 5.506 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.172 0.828 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.468 -16.050 13.131 23.697 hybrid contribution 0.351 -2.763 -2.410 3.683 sum 11.819 -18.813 10.721 24.669 Atomic orbital electron populations 1.21506 0.92137 1.02360 1.03581 1.23387 1.00410 0.96676 1.04351 1.87101 1.04256 1.11685 1.97548 1.24736 0.93983 1.03120 1.01224 0.89608 1.22755 0.98059 0.99205 0.95671 1.22502 0.96593 0.95845 1.01246 1.22372 0.99556 0.96169 0.96817 1.22099 0.93651 0.85525 0.99480 0.89547 1.60752 1.16892 1.43475 1.09761 1.22199 0.97947 0.98686 0.88484 1.21185 0.97506 0.98323 0.96060 1.23198 1.02004 1.02640 0.97997 1.84624 1.48308 1.43993 1.13589 1.22703 1.27609 1.23989 0.91984 0.91050 1.25008 0.95201 0.94731 0.98896 1.70032 1.25427 1.20283 1.34848 0.86185 0.78719 0.77515 0.83214 1.20331 1.20790 1.19714 0.91626 0.91367 0.91374 0.90526 0.90524 0.90210 0.91777 0.91482 0.91083 0.91025 0.90397 0.82828 0.91738 0.93486 0.91776 0.91144 0.92330 0.92307 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.92 37.16 0.37 -0.84 16 2 C -0.10 -0.89 6.53 37.16 0.24 -0.65 16 3 S -0.23 -2.62 16.19 -107.50 -1.74 -4.36 16 4 C -0.10 -0.94 3.36 -25.62 -0.09 -1.03 16 5 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.12 -0.91 6.25 -25.01 -0.16 -1.06 16 7 C -0.12 -0.86 6.91 -24.67 -0.17 -1.03 16 8 C -0.11 -0.96 6.54 -25.08 -0.16 -1.13 16 9 C 0.10 1.08 3.22 -66.60 -0.21 0.87 16 10 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 11 N -0.67 -8.70 6.05 -105.54 -0.64 -9.34 16 12 C 0.06 0.84 4.97 -3.82 -0.02 0.82 16 13 C -0.09 -1.62 5.48 -26.73 -0.15 -1.77 16 14 C -0.11 -2.32 5.67 37.15 0.21 -2.11 16 15 S -0.13 -3.62 21.44 -107.50 -2.30 -5.92 16 16 C -0.51 -15.16 9.50 30.94 0.29 -14.87 16 17 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 18 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 19 N -0.87 -26.55 13.22 55.49 0.73 -25.81 16 20 Si 0.92 21.96 29.55 -169.99 -5.02 16.94 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 28 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 29 H 0.08 0.66 7.81 -51.93 -0.41 0.26 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 35 H 0.35 4.63 6.23 -23.68 -0.15 4.48 16 36 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.05 0.70 6.53 -51.93 -0.34 0.36 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 41 H 0.06 1.25 8.14 -51.91 -0.42 0.82 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 356.26 15.07 5.37 5.37 Total: -1.00 -31.14 356.26 -11.14 -42.28 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.60 Total: 1.70 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 0.06 Total: -20.85 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.10 Total: -35.15 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -6.24 SS G_CDS: -4.04 Total: -10.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.14 -11.14 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336775227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.377 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds