Wall clock time and date at job start Tue Mar 31 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81397 * 109.47139 * 2 1 4 4 C 1.81400 * 103.00229 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.01301 * 54.29451 * 4 3 2 6 6 C 1.54261 * 110.02954 * 292.90528 * 4 3 2 7 7 C 1.55014 * 104.13579 * 217.06433 * 6 4 3 8 8 C 1.54884 * 102.75228 * 37.95313 * 7 6 4 9 9 C 1.53873 * 110.03487 * 175.68684 * 4 3 2 10 10 H 1.09002 * 110.03414 * 238.61754 * 9 4 3 11 11 N 1.46905 * 110.02826 * 359.97438 * 9 4 3 12 12 C 1.46898 * 110.99916 * 275.11128 * 11 9 4 13 13 C 1.53001 * 109.47030 * 180.02562 * 12 11 9 14 14 C 1.52992 * 109.47356 * 180.02562 * 13 12 11 15 15 S 1.81000 * 109.47302 * 179.97438 * 14 13 12 16 16 C 1.76205 * 100.00023 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00031 * 0.02562 * 16 15 14 18 18 C 1.38801 * 119.99914 * 179.97438 * 16 15 14 19 19 N 1.31629 * 119.99711 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00098 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46854 * 89.99868 * 20 18 16 22 22 H 1.48499 * 109.47559 * 210.00393 * 20 18 16 23 23 H 1.48509 * 109.46896 * 330.00660 * 20 18 16 24 24 H 1.08993 * 109.47280 * 300.00496 * 1 2 3 25 25 H 1.09005 * 109.46670 * 60.01065 * 1 2 3 26 26 H 1.09002 * 109.47255 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47549 * 239.99608 * 2 1 3 28 28 H 1.09007 * 109.46950 * 119.99655 * 2 1 3 29 29 H 1.08996 * 110.49020 * 335.73769 * 6 4 3 30 30 H 1.09006 * 110.48832 * 98.38001 * 6 4 3 31 31 H 1.09002 * 110.76487 * 279.62682 * 7 6 4 32 32 H 1.09007 * 110.90151 * 156.33493 * 7 6 4 33 33 H 1.09003 * 110.48476 * 203.36525 * 8 7 6 34 34 H 1.08998 * 110.60012 * 80.77976 * 8 7 6 35 35 H 1.00899 * 111.00407 * 39.07291 * 11 9 4 36 36 H 1.09002 * 109.47329 * 300.00199 * 12 11 9 37 37 H 1.09002 * 109.46928 * 60.00813 * 12 11 9 38 38 H 1.08998 * 109.47173 * 300.00909 * 13 12 11 39 39 H 1.09003 * 109.47102 * 60.00087 * 13 12 11 40 40 H 1.09002 * 109.47157 * 300.00095 * 14 13 12 41 41 H 1.09003 * 109.46952 * 59.99986 * 14 13 12 42 42 H 0.97006 * 119.99540 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2408 0.8698 -0.8307 6 6 4.3980 0.8860 1.3361 7 6 5.7429 1.5951 1.6384 8 6 5.4784 3.0459 1.1652 9 6 4.6234 2.8788 -0.1078 10 1 5.2602 2.9090 -0.9920 11 7 3.6125 3.9422 -0.1802 12 6 3.1511 4.1370 -1.5612 13 6 2.1021 5.2502 -1.5962 14 6 1.6211 5.4526 -3.0344 15 16 0.3795 6.7690 -3.0757 16 6 0.0112 6.7883 -4.7987 17 1 0.5151 6.1050 -5.4663 18 6 -0.9272 7.6809 -5.2979 19 7 -1.5416 8.5133 -4.4841 20 14 -1.3171 7.7019 -7.1246 21 1 -2.4306 6.7600 -7.4039 22 1 -1.7157 9.0738 -7.5300 23 1 -0.1148 7.2885 -7.8921 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.6724 1.0920 2.1229 30 1 4.5485 -0.1880 1.2264 31 1 6.5544 1.1442 1.0671 32 1 5.9640 1.5711 2.7055 33 1 6.4172 3.5479 0.9310 34 1 4.9283 3.6025 1.9239 35 1 2.8376 3.7471 0.4359 36 1 3.9964 4.4148 -2.1909 37 1 2.7111 3.2109 -1.9312 38 1 1.2568 4.9728 -0.9663 39 1 2.5424 6.1761 -1.2262 40 1 2.4662 5.7298 -3.6645 41 1 1.1806 4.5265 -3.4039 42 1 -2.1972 9.1374 -4.8330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336775227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:01 Heat of formation + Delta-G solvation = -47.296948 kcal Electronic energy + Delta-G solvation = -18571.652708 eV Core-core repulsion = 15801.954098 eV Total energy + Delta-G solvation = -2769.698609 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.75121 -36.57426 -34.60416 -33.76943 -33.05047 -29.85271 -28.47362 -27.70905 -25.38588 -24.37769 -22.59009 -21.59340 -21.13998 -19.53691 -17.56888 -17.45322 -16.89373 -16.37849 -16.30552 -16.25327 -15.69344 -15.28523 -15.03445 -14.81004 -14.70800 -13.93996 -13.70502 -13.53546 -13.36123 -13.09728 -12.98595 -12.85839 -12.61308 -12.46473 -12.38218 -12.15750 -12.03555 -11.96002 -11.75938 -11.69879 -11.53619 -11.27031 -11.13853 -10.66829 -10.30839 -9.42887 -8.66115 -8.59382 -8.36650 -6.13017 0.64739 1.31193 1.39494 1.48789 1.60210 1.75580 2.28968 2.97216 3.17500 3.35739 3.51108 3.64935 3.99822 4.02498 4.05146 4.09517 4.29266 4.34158 4.40326 4.42831 4.48184 4.49264 4.53213 4.62744 4.75640 4.79708 4.82152 4.86873 4.88342 4.97361 5.05351 5.15708 5.19898 5.23076 5.26019 5.33659 5.39790 5.44935 6.09526 6.18635 6.40613 7.05070 8.72963 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.003215 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.504263 B = 8708.357425 C = 9499.464583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 S -0.294 6.294 4 C -0.086 4.086 5 H 0.090 0.910 6 C -0.112 4.112 7 C -0.115 4.115 8 C -0.108 4.108 9 C 0.099 3.901 10 H 0.088 0.912 11 N -0.679 5.679 12 C 0.073 3.927 13 C -0.079 4.079 14 C -0.083 4.083 15 S -0.198 6.198 16 C -0.538 4.538 17 H 0.072 0.928 18 C 0.014 3.986 19 N -0.908 5.908 20 Si 0.995 3.005 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.263 1.263 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.345 0.655 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.485 -20.168 11.934 27.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.234 4.234 3 S -0.067 6.067 4 C -0.217 4.217 5 H 0.108 0.892 6 C -0.152 4.152 7 C -0.153 4.153 8 C -0.147 4.147 9 C -0.012 4.012 10 H 0.106 0.894 11 N -0.314 5.314 12 C -0.058 4.058 13 C -0.118 4.118 14 C -0.233 4.233 15 S 0.030 5.970 16 C -0.686 4.686 17 H 0.090 0.910 18 C -0.190 4.190 19 N -0.544 5.544 20 Si 0.817 3.183 21 H -0.192 1.192 22 H -0.198 1.198 23 H -0.187 1.187 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.169 0.831 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.755 -17.924 12.747 25.426 hybrid contribution -0.014 -2.229 -2.211 3.140 sum 12.741 -20.154 10.536 26.068 Atomic orbital electron populations 1.21513 0.92231 1.03334 1.02413 1.23382 1.00167 0.94499 1.05348 1.87322 1.06886 1.14811 1.97694 1.24688 0.91881 1.02612 1.02506 0.89192 1.22718 0.98133 1.00032 0.94274 1.22483 0.96458 0.94250 1.02155 1.22351 0.99214 0.97493 0.95632 1.22236 0.93125 0.85363 1.00497 0.89393 1.60738 1.17169 1.45089 1.08379 1.21947 0.96879 0.97121 0.89895 1.21050 0.98100 0.99277 0.93353 1.23105 0.99842 0.99874 1.00433 1.84654 1.51191 1.47375 1.13742 1.23042 1.28353 1.24582 0.92638 0.90999 1.26093 0.94620 0.93910 1.04426 1.70167 1.25959 1.20953 1.37350 0.85000 0.78883 0.78048 0.76368 1.19231 1.19804 1.18686 0.92160 0.93165 0.89237 0.89965 0.88924 0.90894 0.90268 0.90261 0.89911 0.90442 0.91495 0.83125 0.91306 0.93576 0.92573 0.91897 0.91987 0.92246 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.92 71.98 0.71 -1.57 16 2 C -0.09 -1.40 6.53 71.98 0.47 -0.93 16 3 S -0.29 -6.45 16.19 -56.49 -0.91 -7.37 16 4 C -0.09 -1.49 3.36 31.32 0.11 -1.38 16 5 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 6 C -0.11 -1.46 6.25 31.71 0.20 -1.26 16 7 C -0.11 -1.29 6.91 31.93 0.22 -1.07 16 8 C -0.11 -1.70 6.54 31.67 0.21 -1.49 16 9 C 0.10 1.92 3.22 45.64 0.15 2.06 16 10 H 0.09 1.67 7.85 -2.39 -0.02 1.66 16 11 N -0.68 -17.16 6.05 -487.83 -2.95 -20.11 16 12 C 0.07 2.08 4.97 86.30 0.43 2.51 16 13 C -0.08 -2.81 5.48 30.59 0.17 -2.65 16 14 C -0.08 -3.57 5.67 71.98 0.41 -3.16 16 15 S -0.20 -11.06 21.44 -56.49 -1.21 -12.27 16 16 C -0.54 -32.15 9.50 67.95 0.65 -31.50 16 17 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 18 C 0.01 0.83 5.49 84.86 0.47 1.30 16 19 N -0.91 -56.15 13.22 21.65 0.29 -55.87 16 20 Si 1.00 44.90 29.55 68.60 2.03 46.92 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.08 7.81 -2.39 -0.02 1.06 16 30 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.78 8.14 -2.38 -0.02 0.77 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.21 8.05 -2.39 -0.02 1.19 16 35 H 0.34 9.19 6.23 -99.62 -0.62 8.57 16 36 H 0.07 1.92 8.07 -2.39 -0.02 1.90 16 37 H 0.05 1.34 6.53 -2.39 -0.02 1.33 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 Total: -1.00 -67.68 356.26 1.76 -65.93 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.34 Total: 21.90 kcal Atomic # 6 Polarization: -43.32 SS G_CDS: 4.18 Total: -39.14 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -2.66 Total: -75.98 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: -17.51 SS G_CDS: -2.13 Total: -19.63 kcal Total: -67.68 1.76 -65.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336775227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.629 kcal (2) G-P(sol) polarization free energy of solvation -67.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds