Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81397 * 109.47223 * 2 1 4 4 C 1.81401 * 103.00131 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.53740 * 303.84162 * 4 3 2 6 6 C 1.54887 * 110.48678 * 66.45118 * 4 3 2 7 7 C 1.54890 * 102.91108 * 156.52917 * 6 4 3 8 8 C 1.54463 * 104.10368 * 322.30112 * 7 6 4 9 9 C 1.53877 * 106.68421 * 23.34437 * 8 7 6 10 10 H 1.08995 * 110.02951 * 240.87549 * 9 8 7 11 11 N 1.46894 * 110.07272 * 119.46279 * 9 8 7 12 12 C 1.46901 * 111.00174 * 87.80990 * 11 9 8 13 13 C 1.52999 * 109.47437 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46881 * 180.02562 * 13 12 11 15 15 S 1.81000 * 109.46648 * 179.97438 * 14 13 12 16 16 C 1.76199 * 99.99940 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00131 * 0.02562 * 16 15 14 18 18 C 1.38803 * 120.00305 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99621 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99998 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46912 * 60.00439 * 20 18 16 22 22 H 1.48502 * 109.46765 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47153 * 300.00197 * 20 18 16 24 24 H 1.09000 * 109.47374 * 299.99927 * 1 2 3 25 25 H 1.09001 * 109.47239 * 60.00448 * 1 2 3 26 26 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46961 * 240.00294 * 2 1 3 28 28 H 1.08997 * 109.46952 * 120.00252 * 2 1 3 29 29 H 1.09002 * 110.75856 * 274.93827 * 6 4 3 30 30 H 1.09006 * 110.75640 * 38.12813 * 6 4 3 31 31 H 1.09003 * 110.48855 * 80.83451 * 7 6 4 32 32 H 1.09003 * 110.48748 * 203.47148 * 7 6 4 33 33 H 1.08999 * 109.85715 * 264.10233 * 8 7 6 34 34 H 1.08997 * 110.12155 * 142.72920 * 8 7 6 35 35 H 1.00898 * 110.99938 * 211.76052 * 11 9 8 36 36 H 1.09002 * 109.47073 * 299.99961 * 12 11 9 37 37 H 1.09001 * 109.47050 * 59.99599 * 12 11 9 38 38 H 1.09002 * 109.46993 * 300.00053 * 13 12 11 39 39 H 1.08995 * 109.46899 * 59.99776 * 13 12 11 40 40 H 1.08997 * 109.46699 * 299.99037 * 14 13 12 41 41 H 1.08991 * 109.47350 * 60.00080 * 14 13 12 42 42 H 0.97003 * 119.99812 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 -0.0008 5 1 4.2534 0.8977 0.8468 6 6 4.4099 0.8689 -1.3312 7 6 5.8885 1.3205 -1.4248 8 6 5.8773 2.7628 -0.8721 9 6 4.6364 2.8805 0.0302 10 1 3.9663 3.6490 -0.3550 11 7 5.0410 3.2084 1.4037 12 6 5.1497 4.6618 1.5878 13 6 5.5714 4.9635 3.0272 14 6 5.6839 6.4773 3.2189 15 16 6.1821 6.8343 4.9220 16 6 6.2336 8.5945 4.8632 17 1 5.9923 9.1115 3.9461 18 6 6.5831 9.3169 5.9957 19 7 6.8766 8.6869 7.1135 20 14 6.6369 11.1831 5.9335 21 1 5.2937 11.7054 5.5753 22 1 7.0356 11.7113 7.2629 23 1 7.6248 11.6161 4.9128 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 4.3400 -0.2179 -1.2855 30 1 3.8336 1.2566 -2.1713 31 1 6.5221 0.6823 -0.8089 32 1 6.2262 1.3084 -2.4612 33 1 5.8094 3.4742 -1.6951 34 1 6.7805 2.9486 -0.2909 35 1 4.4037 2.8057 2.0743 36 1 5.8948 5.0605 0.8993 37 1 4.1843 5.1266 1.3873 38 1 4.8260 4.5649 3.7153 39 1 6.5366 4.4987 3.2280 40 1 6.4292 6.8763 2.5308 41 1 4.7185 6.9417 3.0183 42 1 7.1212 9.1916 7.9049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336775228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = -35.504072 kcal Electronic energy + Delta-G solvation = -18067.053035 eV Core-core repulsion = 15297.865803 eV Total energy + Delta-G solvation = -2769.187232 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.84859 -35.48997 -33.16231 -32.41256 -31.93761 -29.19442 -27.49766 -25.59743 -24.22488 -23.81398 -21.57855 -20.69599 -19.97541 -17.42654 -17.04827 -16.45260 -15.56969 -15.30196 -15.12113 -14.81995 -14.75666 -14.12507 -13.99375 -13.72647 -13.23326 -13.02471 -12.81441 -12.49969 -12.23803 -11.91235 -11.72932 -11.50762 -11.39991 -11.33910 -11.18549 -11.11292 -11.02426 -10.76258 -10.75249 -10.58610 -10.35947 -10.09666 -9.49167 -9.02057 -8.46827 -8.26540 -7.95945 -6.48951 -6.19448 -3.89390 1.35509 2.26101 3.24027 3.25549 3.29957 3.58345 4.07820 4.11704 4.26108 4.37584 4.53864 4.59783 4.74540 5.00277 5.05638 5.08775 5.13434 5.16302 5.27191 5.31891 5.34611 5.37102 5.41325 5.46977 5.56123 5.59589 5.70211 5.74891 5.75442 5.80942 5.96692 6.00631 6.07602 6.16478 6.38432 6.64545 6.78295 7.05237 7.35145 7.63414 8.39709 9.26611 10.88728 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.025740 B = 0.002531 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.526053 B =11058.867297 C =11663.263998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 S -0.262 6.262 4 C -0.062 4.062 5 H 0.100 0.900 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.113 4.113 9 C 0.107 3.893 10 H 0.056 0.944 11 N -0.681 5.681 12 C 0.063 3.937 13 C -0.095 4.095 14 C -0.112 4.112 15 S -0.133 6.133 16 C -0.516 4.516 17 H 0.071 0.929 18 C 0.070 3.930 19 N -0.870 5.870 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.343 0.657 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.931 -18.788 -17.936 27.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.237 4.237 3 S -0.033 6.033 4 C -0.191 4.191 5 H 0.118 0.882 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.005 4.005 10 H 0.074 0.926 11 N -0.313 5.313 12 C -0.067 4.067 13 C -0.133 4.133 14 C -0.261 4.261 15 S 0.095 5.905 16 C -0.664 4.664 17 H 0.090 0.910 18 C -0.138 4.138 19 N -0.506 5.506 20 Si 0.745 3.255 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.199 1.199 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.161 0.839 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.629 -18.611 -16.962 26.311 hybrid contribution -0.486 1.180 -0.917 1.572 sum -8.115 -17.431 -17.879 26.255 Atomic orbital electron populations 1.21518 0.92292 1.02480 1.03272 1.23279 1.00129 0.95507 1.04800 1.87054 1.05556 1.12785 1.97908 1.24287 0.92115 1.00845 1.01862 0.88223 1.22819 0.97038 0.99945 0.95796 1.22350 0.95655 0.96680 1.01040 1.22245 0.98448 0.96480 0.98079 1.21925 0.94621 0.93308 0.90597 0.92649 1.60731 1.54901 1.12438 1.03187 1.22075 0.99706 0.86662 0.98261 1.21236 1.02590 0.95069 0.94452 1.23216 1.02683 0.97153 1.03037 1.84620 1.89320 1.09189 1.07328 1.22656 1.53634 0.90176 0.99974 0.91049 1.25015 0.94681 0.99491 0.94633 1.70017 1.43523 1.35999 1.01041 0.86228 0.78711 0.83168 0.77442 1.19957 1.20826 1.19942 0.91600 0.91738 0.91171 0.90196 0.90163 0.91470 0.90248 0.91244 0.91360 0.91808 0.89839 0.83852 0.91088 0.95249 0.91821 0.90769 0.92146 0.92349 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.92 37.16 0.37 -0.50 16 2 C -0.09 -0.64 6.53 37.16 0.24 -0.39 16 3 S -0.26 -2.58 21.01 -107.50 -2.26 -4.84 16 4 C -0.06 -0.56 2.81 -25.07 -0.07 -0.63 16 5 H 0.10 0.93 7.96 -51.93 -0.41 0.52 16 6 C -0.12 -0.88 6.20 -24.74 -0.15 -1.03 16 7 C -0.12 -0.91 6.85 -24.97 -0.17 -1.08 16 8 C -0.11 -1.07 6.55 -25.51 -0.17 -1.24 16 9 C 0.11 1.13 2.84 -66.60 -0.19 0.94 16 10 H 0.06 0.66 7.46 -51.93 -0.39 0.27 16 11 N -0.68 -8.24 6.17 -105.55 -0.65 -8.89 16 12 C 0.06 0.88 5.51 -3.82 -0.02 0.86 16 13 C -0.09 -1.59 5.48 -26.73 -0.15 -1.74 16 14 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 15 S -0.13 -3.55 21.44 -107.50 -2.30 -5.86 16 16 C -0.52 -15.08 9.50 30.94 0.29 -14.78 16 17 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 18 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 19 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 20 Si 0.92 21.84 29.55 -169.99 -5.02 16.81 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.61 8.05 -51.93 -0.42 0.20 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.89 7.92 -51.93 -0.41 0.48 16 35 H 0.34 4.10 8.32 -39.29 -0.33 3.77 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.03 0.42 8.07 -51.93 -0.42 0.00 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 41 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -30.87 363.93 -11.76 -42.63 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.84 Total: 0.06 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 0.10 Total: -19.76 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.08 Total: -34.53 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -6.14 SS G_CDS: -4.56 Total: -10.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.87 -11.76 -42.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336775228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.122 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds