Wall clock time and date at job start Tue Mar 31 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81397 * 109.47223 * 2 1 4 4 C 1.81401 * 103.00131 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.53740 * 303.84162 * 4 3 2 6 6 C 1.54887 * 110.48678 * 66.45118 * 4 3 2 7 7 C 1.54890 * 102.91108 * 156.52917 * 6 4 3 8 8 C 1.54463 * 104.10368 * 322.30112 * 7 6 4 9 9 C 1.53877 * 106.68421 * 23.34437 * 8 7 6 10 10 H 1.08995 * 110.02951 * 240.87549 * 9 8 7 11 11 N 1.46894 * 110.07272 * 119.46279 * 9 8 7 12 12 C 1.46901 * 111.00174 * 87.80990 * 11 9 8 13 13 C 1.52999 * 109.47437 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46881 * 180.02562 * 13 12 11 15 15 S 1.81000 * 109.46648 * 179.97438 * 14 13 12 16 16 C 1.76199 * 99.99940 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00131 * 0.02562 * 16 15 14 18 18 C 1.38803 * 120.00305 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99621 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99998 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46912 * 60.00439 * 20 18 16 22 22 H 1.48502 * 109.46765 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47153 * 300.00197 * 20 18 16 24 24 H 1.09000 * 109.47374 * 299.99927 * 1 2 3 25 25 H 1.09001 * 109.47239 * 60.00448 * 1 2 3 26 26 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46961 * 240.00294 * 2 1 3 28 28 H 1.08997 * 109.46952 * 120.00252 * 2 1 3 29 29 H 1.09002 * 110.75856 * 274.93827 * 6 4 3 30 30 H 1.09006 * 110.75640 * 38.12813 * 6 4 3 31 31 H 1.09003 * 110.48855 * 80.83451 * 7 6 4 32 32 H 1.09003 * 110.48748 * 203.47148 * 7 6 4 33 33 H 1.08999 * 109.85715 * 264.10233 * 8 7 6 34 34 H 1.08997 * 110.12155 * 142.72920 * 8 7 6 35 35 H 1.00898 * 110.99938 * 211.76052 * 11 9 8 36 36 H 1.09002 * 109.47073 * 299.99961 * 12 11 9 37 37 H 1.09001 * 109.47050 * 59.99599 * 12 11 9 38 38 H 1.09002 * 109.46993 * 300.00053 * 13 12 11 39 39 H 1.08995 * 109.46899 * 59.99776 * 13 12 11 40 40 H 1.08997 * 109.46699 * 299.99037 * 14 13 12 41 41 H 1.08991 * 109.47350 * 60.00080 * 14 13 12 42 42 H 0.97003 * 119.99812 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 -0.0008 5 1 4.2534 0.8977 0.8468 6 6 4.4099 0.8689 -1.3312 7 6 5.8885 1.3205 -1.4248 8 6 5.8773 2.7628 -0.8721 9 6 4.6364 2.8805 0.0302 10 1 3.9663 3.6490 -0.3550 11 7 5.0410 3.2084 1.4037 12 6 5.1497 4.6618 1.5878 13 6 5.5714 4.9635 3.0272 14 6 5.6839 6.4773 3.2189 15 16 6.1821 6.8343 4.9220 16 6 6.2336 8.5945 4.8632 17 1 5.9923 9.1115 3.9461 18 6 6.5831 9.3169 5.9957 19 7 6.8766 8.6869 7.1135 20 14 6.6369 11.1831 5.9335 21 1 5.2937 11.7054 5.5753 22 1 7.0356 11.7113 7.2629 23 1 7.6248 11.6161 4.9128 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 4.3400 -0.2179 -1.2855 30 1 3.8336 1.2566 -2.1713 31 1 6.5221 0.6823 -0.8089 32 1 6.2262 1.3084 -2.4612 33 1 5.8094 3.4742 -1.6951 34 1 6.7805 2.9486 -0.2909 35 1 4.4037 2.8057 2.0743 36 1 5.8948 5.0605 0.8993 37 1 4.1843 5.1266 1.3873 38 1 4.8260 4.5649 3.7153 39 1 6.5366 4.4987 3.2280 40 1 6.4292 6.8763 2.5308 41 1 4.7185 6.9417 3.0183 42 1 7.1212 9.1916 7.9049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336775228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:04 Heat of formation + Delta-G solvation = -52.426492 kcal Electronic energy + Delta-G solvation = -18067.786846 eV Core-core repulsion = 15297.865803 eV Total energy + Delta-G solvation = -2769.921043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.66557 -36.60075 -34.61379 -33.71771 -33.15669 -29.90054 -28.54319 -27.72752 -25.44016 -24.41510 -22.68481 -21.65642 -20.77633 -19.54629 -17.82948 -17.33873 -16.90029 -16.52769 -16.30112 -16.19694 -15.69689 -15.40098 -14.92930 -14.85327 -14.58694 -13.97326 -13.79343 -13.58384 -13.36317 -13.17788 -12.92316 -12.87027 -12.58338 -12.48800 -12.30250 -12.22356 -12.16586 -11.94230 -11.85600 -11.71518 -11.43414 -11.32937 -11.13981 -10.78203 -10.33474 -9.47332 -8.71652 -8.67589 -8.37682 -6.14305 0.68033 1.30639 1.40512 1.47164 1.60245 1.73406 2.27925 2.96264 3.07767 3.33643 3.39195 3.64335 3.99142 4.00379 4.02382 4.08924 4.21828 4.28940 4.38715 4.39658 4.44725 4.46678 4.51182 4.61892 4.69843 4.77614 4.81006 4.85513 4.89687 4.97021 5.02638 5.15533 5.18754 5.21030 5.25515 5.30204 5.38673 5.40839 6.02321 6.17353 6.35404 7.04104 8.71605 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.025740 B = 0.002531 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.526053 B =11058.867297 C =11663.263998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.077 4.077 3 S -0.313 6.313 4 C -0.050 4.050 5 H 0.098 0.902 6 C -0.109 4.109 7 C -0.113 4.113 8 C -0.114 4.114 9 C 0.106 3.894 10 H 0.042 0.958 11 N -0.680 5.680 12 C 0.077 3.923 13 C -0.082 4.082 14 C -0.087 4.087 15 S -0.197 6.197 16 C -0.540 4.540 17 H 0.072 0.928 18 C 0.014 3.986 19 N -0.907 5.907 20 Si 0.995 3.005 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.264 1.264 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.344 0.656 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 -19.337 -19.525 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.225 4.225 3 S -0.084 6.084 4 C -0.179 4.179 5 H 0.116 0.884 6 C -0.149 4.149 7 C -0.152 4.152 8 C -0.153 4.153 9 C -0.005 4.005 10 H 0.060 0.940 11 N -0.312 5.312 12 C -0.054 4.054 13 C -0.121 4.121 14 C -0.237 4.237 15 S 0.032 5.968 16 C -0.688 4.688 17 H 0.090 0.910 18 C -0.190 4.190 19 N -0.544 5.544 20 Si 0.816 3.184 21 H -0.190 1.190 22 H -0.199 1.199 23 H -0.189 1.189 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.162 0.838 36 H 0.093 0.907 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.910 -19.177 -18.562 27.836 hybrid contribution -0.439 1.261 -0.460 1.412 sum -8.349 -17.916 -19.021 27.432 Atomic orbital electron populations 1.21532 0.91757 1.03547 1.02594 1.23335 1.00426 0.93046 1.05699 1.87247 1.06950 1.16198 1.98038 1.24199 0.91050 0.99839 1.02835 0.88370 1.22792 0.96657 1.00782 0.94642 1.22332 0.95804 0.95213 1.01822 1.22241 0.97164 0.98067 0.97833 1.21973 0.95117 0.93890 0.89529 0.93980 1.60720 1.55184 1.10993 1.04287 1.21834 0.99568 0.88021 0.95952 1.21109 1.02404 0.92068 0.96510 1.23141 1.02334 0.99826 0.98360 1.84626 1.89963 1.09142 1.13113 1.23012 1.54186 0.91125 1.00438 0.90973 1.26091 0.93782 1.05187 0.93986 1.70151 1.44143 1.38240 1.01834 0.85061 0.79223 0.76105 0.77992 1.18956 1.19854 1.18869 0.92611 0.92102 0.89117 0.88819 0.89632 0.89853 0.90289 0.91079 0.89908 0.91412 0.91078 0.83788 0.90743 0.95400 0.91992 0.91269 0.91868 0.92254 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.92 71.98 0.71 -0.81 16 2 C -0.08 -0.97 6.53 71.98 0.47 -0.50 16 3 S -0.31 -5.93 21.01 -56.49 -1.19 -7.12 16 4 C -0.05 -0.85 2.81 31.67 0.09 -0.76 16 5 H 0.10 1.70 7.96 -2.38 -0.02 1.68 16 6 C -0.11 -1.40 6.20 31.88 0.20 -1.20 16 7 C -0.11 -1.48 6.85 31.74 0.22 -1.27 16 8 C -0.11 -2.01 6.55 31.39 0.21 -1.80 16 9 C 0.11 2.14 2.84 45.64 0.13 2.27 16 10 H 0.04 0.98 7.46 -2.39 -0.02 0.96 16 11 N -0.68 -15.97 6.17 -487.85 -3.01 -18.98 16 12 C 0.08 2.09 5.51 86.30 0.48 2.57 16 13 C -0.08 -2.73 5.48 30.60 0.17 -2.57 16 14 C -0.09 -3.62 5.67 71.98 0.41 -3.21 16 15 S -0.20 -10.78 21.44 -56.49 -1.21 -11.99 16 16 C -0.54 -31.88 9.50 67.96 0.65 -31.24 16 17 H 0.07 4.10 7.80 -2.91 -0.02 4.07 16 18 C 0.01 0.84 5.49 84.86 0.47 1.30 16 19 N -0.91 -55.66 13.22 21.65 0.29 -55.37 16 20 Si 0.99 44.58 29.55 68.60 2.03 46.60 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 1.05 8.05 -2.38 -0.02 1.03 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.45 7.92 -2.39 -0.02 1.43 16 35 H 0.34 8.01 8.32 -89.70 -0.75 7.26 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 37 H 0.03 0.77 8.07 -2.39 -0.02 0.75 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.06 2.58 8.14 -2.40 -0.02 2.56 16 41 H 0.06 2.44 8.14 -2.40 -0.02 2.42 16 42 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -66.80 363.93 1.31 -65.49 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.21 Total: 18.58 kcal Atomic # 6 Polarization: -41.40 SS G_CDS: 4.19 Total: -37.21 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -2.72 Total: -74.35 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -16.71 SS G_CDS: -2.40 Total: -19.11 kcal Total: -66.80 1.31 -65.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336775228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.063 kcal (2) G-P(sol) polarization free energy of solvation -66.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds