Wall clock time and date at job start Tue Mar 31 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81398 * 109.46839 * 2 1 4 4 C 1.81400 * 103.00098 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.05522 * 53.58172 * 4 3 2 6 6 C 1.54264 * 110.03260 * 292.17140 * 4 3 2 7 7 C 1.54888 * 104.19570 * 217.10410 * 6 4 3 8 8 C 1.54885 * 102.74879 * 37.93915 * 7 6 4 9 9 C 1.53870 * 110.03645 * 175.00163 * 4 3 2 10 10 H 1.09004 * 110.07055 * 359.97438 * 9 4 3 11 11 N 1.46905 * 110.03260 * 238.57012 * 9 4 3 12 12 C 1.46901 * 110.99870 * 156.37905 * 11 9 4 13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.46700 * 179.97438 * 13 12 11 15 15 S 1.81007 * 109.46892 * 179.97438 * 14 13 12 16 16 C 1.76199 * 99.99998 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00023 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99718 * 179.97438 * 16 15 14 19 19 N 1.31625 * 120.00348 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99575 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47234 * 90.00209 * 20 18 16 22 22 H 1.48500 * 109.46921 * 209.99970 * 20 18 16 23 23 H 1.48503 * 109.47182 * 329.99917 * 20 18 16 24 24 H 1.09003 * 109.46880 * 299.99557 * 1 2 3 25 25 H 1.08993 * 109.47254 * 59.99929 * 1 2 3 26 26 H 1.09002 * 109.46925 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46880 * 240.00442 * 2 1 3 28 28 H 1.08995 * 109.47734 * 120.00269 * 2 1 3 29 29 H 1.08998 * 110.49099 * 98.42196 * 6 4 3 30 30 H 1.09003 * 110.60044 * 335.83335 * 6 4 3 31 31 H 1.08999 * 110.75361 * 279.62201 * 7 6 4 32 32 H 1.09003 * 110.91369 * 156.32909 * 7 6 4 33 33 H 1.09003 * 110.48750 * 203.38036 * 8 7 6 34 34 H 1.08995 * 110.49002 * 80.73921 * 8 7 6 35 35 H 1.00901 * 110.99869 * 32.42616 * 11 9 4 36 36 H 1.09004 * 109.47031 * 299.99620 * 12 11 9 37 37 H 1.08995 * 109.47111 * 59.99900 * 12 11 9 38 38 H 1.08995 * 109.46615 * 299.99641 * 13 12 11 39 39 H 1.08996 * 109.46939 * 60.00272 * 13 12 11 40 40 H 1.08993 * 109.47740 * 299.99810 * 14 13 12 41 41 H 1.09005 * 109.47573 * 59.99976 * 14 13 12 42 42 H 0.96997 * 120.00488 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 -0.0008 5 1 4.2396 0.8600 -0.8249 6 6 4.4011 0.9028 1.3411 7 6 5.7452 1.6149 1.6330 8 6 5.4799 3.0600 1.1429 9 6 4.6230 2.8775 -0.1268 10 1 3.8734 3.6665 -0.1880 11 7 5.4795 2.9040 -1.3201 12 6 5.6930 4.2813 -1.7843 13 6 6.5869 4.2682 -3.0260 14 6 6.8087 5.7026 -3.5098 15 16 7.8669 5.6871 -4.9782 16 6 7.9533 7.4152 -5.3113 17 1 7.4329 8.1147 -4.6738 18 6 8.6909 7.8776 -6.3924 19 7 9.3255 7.0251 -7.1690 20 14 8.7831 9.7096 -6.7450 21 1 9.9407 10.2952 -6.0224 22 1 8.9504 9.9249 -8.2048 23 1 7.5313 10.3652 -6.2882 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 4.5521 -0.1724 1.2442 30 1 3.6776 1.1160 2.1280 31 1 6.5559 1.1573 1.0660 32 1 5.9678 1.6036 2.7000 33 1 6.4183 3.5592 0.9013 34 1 4.9300 3.6236 1.8965 35 1 5.0936 2.3304 -2.0550 36 1 4.7330 4.7338 -2.0331 37 1 6.1740 4.8600 -0.9959 38 1 7.5469 3.8156 -2.7776 39 1 6.1054 3.6896 -3.8142 40 1 5.8486 6.1548 -3.7582 41 1 7.2900 6.2817 -2.7216 42 1 9.8413 7.3482 -7.9242 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336775229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:08 Heat of formation + Delta-G solvation = -35.178333 kcal Electronic energy + Delta-G solvation = -18064.215093 eV Core-core repulsion = 15295.041986 eV Total energy + Delta-G solvation = -2769.173107 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.89242 -35.44091 -33.17417 -32.42127 -31.89434 -29.19463 -27.55519 -25.62050 -24.31991 -23.82542 -21.49058 -20.64335 -20.01064 -17.43611 -16.99914 -16.46714 -15.61159 -15.42323 -15.11280 -14.79738 -14.72702 -14.25491 -14.07207 -13.63585 -13.07073 -13.01826 -12.83152 -12.48677 -12.15974 -11.90947 -11.74339 -11.51337 -11.40014 -11.28315 -11.18100 -11.13848 -11.04647 -10.84950 -10.75017 -10.58079 -10.37376 -10.10130 -9.49902 -9.03708 -8.47074 -8.27473 -7.96127 -6.50134 -6.20568 -3.90529 1.34182 2.24757 3.23202 3.23894 3.30662 3.57523 4.08001 4.19324 4.25097 4.31635 4.52999 4.58759 4.77121 4.99369 5.06607 5.12029 5.15322 5.16965 5.30510 5.31447 5.35542 5.38784 5.41780 5.49595 5.54900 5.61936 5.68318 5.72418 5.77218 5.83371 5.95205 6.00048 6.11192 6.15871 6.36423 6.62655 6.76470 7.02558 7.31684 7.62793 8.38977 9.25683 10.87641 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.028442 B = 0.002448 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.230410 B =11435.311360 C =11884.717794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 S -0.263 6.263 4 C -0.058 4.058 5 H 0.095 0.905 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.112 4.112 9 C 0.105 3.895 10 H 0.055 0.945 11 N -0.679 5.679 12 C 0.063 3.937 13 C -0.094 4.094 14 C -0.112 4.112 15 S -0.133 6.133 16 C -0.515 4.515 17 H 0.072 0.928 18 C 0.070 3.930 19 N -0.870 5.870 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.341 0.659 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.820 -14.649 17.968 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.238 4.238 3 S -0.035 6.035 4 C -0.187 4.187 5 H 0.113 0.887 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.150 4.150 9 C -0.006 4.006 10 H 0.072 0.928 11 N -0.311 5.311 12 C -0.067 4.067 13 C -0.133 4.133 14 C -0.261 4.261 15 S 0.095 5.905 16 C -0.664 4.664 17 H 0.090 0.910 18 C -0.138 4.138 19 N -0.506 5.506 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.160 0.840 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.277 -14.629 17.574 26.441 hybrid contribution -0.662 1.254 -0.129 1.424 sum -13.939 -13.375 17.445 26.029 Atomic orbital electron populations 1.21516 0.92308 1.02482 1.03219 1.23289 1.00111 0.95576 1.04835 1.87030 1.05699 1.12807 1.97920 1.24045 0.92125 1.00677 1.01830 0.88706 1.22735 0.98248 0.99534 0.95155 1.22421 0.96701 0.95504 1.00738 1.22391 1.00316 0.97141 0.95193 1.21909 0.92662 0.93571 0.92458 0.92756 1.60694 1.50485 1.12128 1.07764 1.22086 0.98439 0.88569 0.97643 1.21234 1.00244 0.96303 0.95548 1.23217 1.02661 0.97960 1.02263 1.84623 1.62830 1.12815 1.30241 1.22694 1.36561 0.90832 1.16285 0.90987 1.25018 0.94750 0.98958 0.95122 1.70020 1.30235 1.34203 1.16106 0.86168 0.78639 0.83148 0.77585 1.20269 1.20768 1.19704 0.91737 0.91654 0.91171 0.90192 0.90158 0.91536 0.90422 0.90761 0.91519 0.90221 0.91549 0.84043 0.95219 0.91013 0.90743 0.91854 0.92339 0.92129 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.92 37.16 0.37 -0.48 16 2 C -0.09 -0.64 6.55 37.16 0.24 -0.39 16 3 S -0.26 -2.55 20.69 -107.50 -2.22 -4.78 16 4 C -0.06 -0.53 3.09 -25.62 -0.08 -0.61 16 5 H 0.09 0.87 7.49 -51.93 -0.39 0.49 16 6 C -0.12 -0.92 6.26 -25.07 -0.16 -1.08 16 7 C -0.11 -0.95 6.91 -24.74 -0.17 -1.13 16 8 C -0.11 -1.08 6.45 -25.08 -0.16 -1.24 16 9 C 0.11 1.11 2.92 -66.60 -0.19 0.91 16 10 H 0.05 0.65 7.29 -51.93 -0.38 0.27 16 11 N -0.68 -8.02 6.25 -105.54 -0.66 -8.67 16 12 C 0.06 0.86 5.47 -3.82 -0.02 0.84 16 13 C -0.09 -1.56 5.48 -26.73 -0.15 -1.71 16 14 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 15 S -0.13 -3.55 21.44 -107.50 -2.30 -5.85 16 16 C -0.52 -15.00 9.50 30.94 0.29 -14.71 16 17 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 18 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 19 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 20 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.61 7.82 -51.93 -0.41 0.20 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.86 7.68 -51.93 -0.40 0.46 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.34 3.86 8.05 -39.29 -0.32 3.55 16 36 H 0.03 0.41 8.07 -51.93 -0.42 -0.01 16 37 H 0.07 0.98 7.78 -51.93 -0.40 0.58 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 41 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -30.78 362.32 -11.68 -42.46 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.75 Total: -0.09 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 0.09 Total: -19.74 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.07 Total: -34.22 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -6.10 SS G_CDS: -4.53 Total: -10.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.78 -11.68 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336775229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.284 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds