Wall clock time and date at job start Tue Mar 31 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81398 * 109.46839 * 2 1 4 4 C 1.81400 * 103.00098 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.05522 * 53.58172 * 4 3 2 6 6 C 1.54264 * 110.03260 * 292.17140 * 4 3 2 7 7 C 1.54888 * 104.19570 * 217.10410 * 6 4 3 8 8 C 1.54885 * 102.74879 * 37.93915 * 7 6 4 9 9 C 1.53870 * 110.03645 * 175.00163 * 4 3 2 10 10 H 1.09004 * 110.07055 * 359.97438 * 9 4 3 11 11 N 1.46905 * 110.03260 * 238.57012 * 9 4 3 12 12 C 1.46901 * 110.99870 * 156.37905 * 11 9 4 13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.46700 * 179.97438 * 13 12 11 15 15 S 1.81007 * 109.46892 * 179.97438 * 14 13 12 16 16 C 1.76199 * 99.99998 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00023 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99718 * 179.97438 * 16 15 14 19 19 N 1.31625 * 120.00348 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99575 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47234 * 90.00209 * 20 18 16 22 22 H 1.48500 * 109.46921 * 209.99970 * 20 18 16 23 23 H 1.48503 * 109.47182 * 329.99917 * 20 18 16 24 24 H 1.09003 * 109.46880 * 299.99557 * 1 2 3 25 25 H 1.08993 * 109.47254 * 59.99929 * 1 2 3 26 26 H 1.09002 * 109.46925 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46880 * 240.00442 * 2 1 3 28 28 H 1.08995 * 109.47734 * 120.00269 * 2 1 3 29 29 H 1.08998 * 110.49099 * 98.42196 * 6 4 3 30 30 H 1.09003 * 110.60044 * 335.83335 * 6 4 3 31 31 H 1.08999 * 110.75361 * 279.62201 * 7 6 4 32 32 H 1.09003 * 110.91369 * 156.32909 * 7 6 4 33 33 H 1.09003 * 110.48750 * 203.38036 * 8 7 6 34 34 H 1.08995 * 110.49002 * 80.73921 * 8 7 6 35 35 H 1.00901 * 110.99869 * 32.42616 * 11 9 4 36 36 H 1.09004 * 109.47031 * 299.99620 * 12 11 9 37 37 H 1.08995 * 109.47111 * 59.99900 * 12 11 9 38 38 H 1.08995 * 109.46615 * 299.99641 * 13 12 11 39 39 H 1.08996 * 109.46939 * 60.00272 * 13 12 11 40 40 H 1.08993 * 109.47740 * 299.99810 * 14 13 12 41 41 H 1.09005 * 109.47573 * 59.99976 * 14 13 12 42 42 H 0.96997 * 120.00488 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 -0.0008 5 1 4.2396 0.8600 -0.8249 6 6 4.4011 0.9028 1.3411 7 6 5.7452 1.6149 1.6330 8 6 5.4799 3.0600 1.1429 9 6 4.6230 2.8775 -0.1268 10 1 3.8734 3.6665 -0.1880 11 7 5.4795 2.9040 -1.3201 12 6 5.6930 4.2813 -1.7843 13 6 6.5869 4.2682 -3.0260 14 6 6.8087 5.7026 -3.5098 15 16 7.8669 5.6871 -4.9782 16 6 7.9533 7.4152 -5.3113 17 1 7.4329 8.1147 -4.6738 18 6 8.6909 7.8776 -6.3924 19 7 9.3255 7.0251 -7.1690 20 14 8.7831 9.7096 -6.7450 21 1 9.9407 10.2952 -6.0224 22 1 8.9504 9.9249 -8.2048 23 1 7.5313 10.3652 -6.2882 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 4.5521 -0.1724 1.2442 30 1 3.6776 1.1160 2.1280 31 1 6.5559 1.1573 1.0660 32 1 5.9678 1.6036 2.7000 33 1 6.4183 3.5592 0.9013 34 1 4.9300 3.6236 1.8965 35 1 5.0936 2.3304 -2.0550 36 1 4.7330 4.7338 -2.0331 37 1 6.1740 4.8600 -0.9959 38 1 7.5469 3.8156 -2.7776 39 1 6.1054 3.6896 -3.8142 40 1 5.8486 6.1548 -3.7582 41 1 7.2900 6.2817 -2.7216 42 1 9.8413 7.3482 -7.9242 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336775229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:07 Heat of formation + Delta-G solvation = -52.034957 kcal Electronic energy + Delta-G solvation = -18064.946051 eV Core-core repulsion = 15295.041986 eV Total energy + Delta-G solvation = -2769.904065 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.71813 -36.55095 -34.61509 -33.70948 -33.10561 -29.91864 -28.57844 -27.74426 -25.54760 -24.40339 -22.65652 -21.53458 -20.84114 -19.54643 -17.79059 -17.34951 -16.90314 -16.52660 -16.37249 -16.17815 -15.70757 -15.44164 -15.05341 -14.87811 -14.48131 -13.95222 -13.67863 -13.57845 -13.36413 -13.14498 -12.93156 -12.81066 -12.56316 -12.47694 -12.32804 -12.20211 -12.18851 -11.94089 -11.86054 -11.70733 -11.52723 -11.31870 -11.14948 -10.78180 -10.33169 -9.45572 -8.70539 -8.67476 -8.37986 -6.14383 0.66787 1.30832 1.38973 1.48141 1.59265 1.73759 2.27652 2.96046 3.09975 3.33747 3.43195 3.56363 3.99650 4.01670 4.02218 4.09409 4.22154 4.29713 4.40497 4.41950 4.43753 4.46578 4.51528 4.66578 4.72654 4.78629 4.82704 4.86200 4.89840 4.94995 5.00300 5.17294 5.18760 5.20986 5.22853 5.29560 5.38952 5.44949 6.00409 6.17453 6.35812 7.04054 8.71473 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.028442 B = 0.002448 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.230410 B =11435.311360 C =11884.717794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 S -0.308 6.308 4 C -0.048 4.048 5 H 0.095 0.905 6 C -0.110 4.110 7 C -0.111 4.111 8 C -0.112 4.112 9 C 0.105 3.895 10 H 0.041 0.959 11 N -0.677 5.677 12 C 0.077 3.923 13 C -0.082 4.082 14 C -0.088 4.088 15 S -0.197 6.197 16 C -0.539 4.539 17 H 0.072 0.928 18 C 0.014 3.986 19 N -0.907 5.907 20 Si 0.995 3.005 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.264 1.264 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.344 0.656 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.597 -14.911 19.207 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.227 4.227 3 S -0.080 6.080 4 C -0.177 4.177 5 H 0.113 0.887 6 C -0.150 4.150 7 C -0.149 4.149 8 C -0.151 4.151 9 C -0.006 4.006 10 H 0.059 0.941 11 N -0.310 5.310 12 C -0.054 4.054 13 C -0.121 4.121 14 C -0.237 4.237 15 S 0.032 5.968 16 C -0.687 4.687 17 H 0.090 0.910 18 C -0.191 4.191 19 N -0.543 5.543 20 Si 0.817 3.183 21 H -0.192 1.192 22 H -0.198 1.198 23 H -0.188 1.188 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.163 0.837 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.058 -14.906 18.824 27.823 hybrid contribution -0.477 1.258 -0.466 1.423 sum -14.536 -13.648 18.358 27.103 Atomic orbital electron populations 1.21529 0.91659 1.03543 1.02646 1.23350 1.00516 0.93215 1.05647 1.87205 1.06760 1.16028 1.98038 1.23958 0.91325 0.99679 1.02703 0.88711 1.22701 0.97808 1.00187 0.94263 1.22396 0.96730 0.94324 1.01480 1.22395 0.99585 0.98211 0.94942 1.21935 0.92381 0.94187 0.92076 0.94149 1.60667 1.51150 1.10873 1.08278 1.21843 0.97603 0.89835 0.96150 1.21104 1.00690 0.93471 0.96788 1.23146 1.00878 1.00685 0.98992 1.84621 1.65118 1.12778 1.34322 1.23039 1.37088 0.91631 1.16903 0.90995 1.26086 0.93961 1.04400 0.94624 1.70151 1.30863 1.36678 1.16658 0.85006 0.79101 0.76448 0.77786 1.19201 1.19828 1.18790 0.92018 0.92538 0.89186 0.89728 0.88909 0.90144 0.90183 0.91362 0.90112 0.91397 0.90968 0.83700 0.95257 0.90801 0.91274 0.91860 0.92224 0.91916 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.92 71.98 0.71 -0.73 16 2 C -0.08 -0.98 6.55 71.98 0.47 -0.51 16 3 S -0.31 -5.69 20.69 -56.49 -1.17 -6.86 16 4 C -0.05 -0.80 3.09 31.32 0.10 -0.71 16 5 H 0.09 1.61 7.49 -2.39 -0.02 1.59 16 6 C -0.11 -1.49 6.26 31.67 0.20 -1.29 16 7 C -0.11 -1.63 6.91 31.88 0.22 -1.41 16 8 C -0.11 -2.05 6.45 31.67 0.20 -1.84 16 9 C 0.10 2.12 2.92 45.64 0.13 2.25 16 10 H 0.04 0.95 7.29 -2.38 -0.02 0.93 16 11 N -0.68 -15.38 6.25 -487.82 -3.05 -18.43 16 12 C 0.08 2.03 5.47 86.30 0.47 2.50 16 13 C -0.08 -2.66 5.48 30.59 0.17 -2.50 16 14 C -0.09 -3.60 5.67 71.98 0.41 -3.19 16 15 S -0.20 -10.70 21.44 -56.49 -1.21 -11.91 16 16 C -0.54 -31.69 9.50 67.95 0.65 -31.04 16 17 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 18 C 0.01 0.82 5.49 84.86 0.47 1.28 16 19 N -0.91 -55.42 13.22 21.65 0.29 -55.13 16 20 Si 0.99 44.49 29.55 68.60 2.03 46.51 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.08 7.82 -2.39 -0.02 1.06 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.40 7.68 -2.39 -0.02 1.38 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.34 7.47 8.05 -89.69 -0.72 6.75 16 36 H 0.03 0.79 8.07 -2.39 -0.02 0.77 16 37 H 0.07 1.94 7.78 -2.39 -0.02 1.92 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 2.43 8.14 -2.40 -0.02 2.41 16 41 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -66.39 362.32 1.32 -65.07 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.24 Total: 17.95 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 4.20 Total: -37.19 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -2.76 Total: -73.56 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: -16.39 SS G_CDS: -2.38 Total: -18.77 kcal Total: -66.39 1.32 -65.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336775229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.031 kcal (2) G-P(sol) polarization free energy of solvation -66.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds