Wall clock time and date at job start Tue Mar 31 2020 06:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47219 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47005 * 300.00652 * 3 2 1 6 6 H 1.48510 * 109.46752 * 59.99919 * 3 2 1 7 7 C 1.37870 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47522 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47054 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.46619 * 180.02562 * 11 10 9 13 13 C 1.46909 * 110.99637 * 185.01117 * 12 11 10 14 14 C 1.50699 * 115.54554 * 185.32359 * 13 12 11 15 15 C 1.38247 * 119.93163 * 354.93724 * 14 13 12 16 16 C 1.38242 * 120.14349 * 179.79380 * 15 14 13 17 17 C 1.38551 * 120.02614 * 0.47327 * 16 15 14 18 18 C 1.39264 * 119.82814 * 359.53048 * 17 16 15 19 19 C 1.38237 * 119.92183 * 174.96367 * 14 13 12 20 20 O 1.36502 * 108.64089 * 180.24511 * 18 17 16 21 21 C 1.43984 * 105.48543 * 342.71813 * 20 18 17 22 22 O 1.36502 * 131.53298 * 179.83275 * 17 16 15 23 23 C 1.52998 * 117.49731 * 330.99447 * 13 12 11 24 24 C 1.52995 * 117.49866 * 39.65383 * 13 12 11 25 25 H 0.97002 * 119.99538 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46518 * 59.99980 * 9 7 2 27 27 H 1.08999 * 109.47278 * 300.00505 * 9 7 2 28 28 H 1.08997 * 109.46797 * 59.99663 * 10 9 7 29 29 H 1.09005 * 109.46643 * 300.00228 * 10 9 7 30 30 H 1.08992 * 109.47496 * 60.00020 * 11 10 9 31 31 H 1.09002 * 109.46761 * 299.99300 * 11 10 9 32 32 H 1.00904 * 110.99982 * 61.06438 * 12 11 10 33 33 H 1.07998 * 119.92956 * 0.04740 * 15 14 13 34 34 H 1.07995 * 119.98536 * 180.33725 * 16 15 14 35 35 H 1.07997 * 119.98777 * 359.97438 * 19 14 13 36 36 H 1.08996 * 110.57276 * 268.55125 * 21 20 18 37 37 H 1.09000 * 110.69711 * 145.73400 * 21 20 18 38 38 H 1.09006 * 117.49546 * 215.00123 * 23 13 12 39 39 H 1.08993 * 117.50354 * 0.02562 * 23 13 12 40 40 H 1.09005 * 117.50155 * 359.97438 * 24 13 12 41 41 H 1.08998 * 117.50209 * 144.97366 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4804 -4.9870 -0.0025 12 7 2.4351 -6.1036 -0.0031 13 6 1.7387 -7.3915 -0.1235 14 6 2.6110 -8.6151 -0.0091 15 6 3.9829 -8.4773 0.0904 16 6 4.7869 -9.5966 0.1998 17 6 4.2194 -10.8605 0.2000 18 6 2.8373 -10.9993 0.0998 19 6 2.0374 -9.8728 -0.0045 20 8 2.5291 -12.3288 0.1275 21 6 3.7605 -13.0150 -0.1655 22 8 4.7772 -12.1031 0.2905 23 6 0.3181 -7.4816 0.4373 24 6 0.5439 -7.4622 -1.0765 25 1 -0.4849 0.8401 0.0004 26 1 0.6242 -2.5566 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.8727 -3.6047 0.8877 29 1 2.8714 -3.6039 -0.8923 30 1 0.8534 -5.0442 -0.8921 31 1 0.8542 -5.0454 0.8878 32 1 3.0165 -6.0826 0.8213 33 1 4.4273 -7.4930 0.0867 34 1 5.8579 -9.4858 0.2828 35 1 0.9653 -9.9775 -0.0824 36 1 3.8558 -13.1900 -1.2371 37 1 3.8168 -13.9560 0.3817 38 1 0.0143 -8.4260 0.8890 39 1 -0.1001 -6.5853 0.8952 40 1 0.2742 -6.5530 -1.6139 41 1 0.3889 -8.3936 -1.6211 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342223754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:34 Heat of formation + Delta-G solvation = -12.551783 kcal Electronic energy + Delta-G solvation = -21942.976354 eV Core-core repulsion = 18596.587585 eV Total energy + Delta-G solvation = -3346.388768 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.40704 -39.72558 -37.17738 -36.53165 -34.51234 -32.69113 -30.91045 -30.32767 -29.93811 -26.56896 -25.86610 -23.84784 -23.07181 -22.51560 -22.35297 -20.27114 -19.95882 -18.14191 -17.80582 -17.56422 -16.69590 -16.23148 -15.59216 -15.28785 -14.90244 -14.64090 -14.42968 -14.12520 -13.89256 -13.54906 -13.33161 -13.24056 -13.08289 -12.46794 -12.19901 -11.95889 -11.89082 -11.53051 -11.43372 -11.14611 -10.91275 -10.63309 -10.55084 -10.48999 -10.34833 -9.68620 -9.36843 -9.07474 -9.04786 -8.34805 -8.32923 -7.95642 -5.99693 -4.01646 0.88374 1.00071 2.46973 3.14005 3.25273 3.31611 3.39110 3.43522 3.93377 4.12673 4.23302 4.35176 4.43868 4.48661 4.57357 4.68065 4.93104 4.97038 5.03046 5.05512 5.29324 5.36340 5.44183 5.53675 5.73573 5.79034 5.82765 5.85963 5.91431 6.09530 6.12832 6.20120 6.27058 6.32578 6.68309 6.73522 6.87713 7.11459 7.24750 7.50194 7.68271 7.82390 8.00603 8.43736 9.05740 9.62529 11.11771 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040617 B = 0.002524 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.207631 B =11090.592456 C =11668.802787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.052 3.948 12 N -0.647 5.647 13 C 0.091 3.909 14 C -0.023 4.023 15 C -0.092 4.092 16 C -0.096 4.096 17 C 0.022 3.978 18 C 0.032 3.968 19 C -0.099 4.099 20 O -0.311 6.311 21 C 0.214 3.786 22 O -0.311 6.311 23 C -0.214 4.214 24 C -0.160 4.160 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.014 0.986 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.343 0.657 33 H 0.149 0.851 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 -25.347 -0.193 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.075 4.075 12 N -0.276 5.276 13 C -0.001 4.001 14 C -0.024 4.024 15 C -0.110 4.110 16 C -0.115 4.115 17 C -0.022 4.022 18 C -0.013 4.013 19 C -0.118 4.118 20 O -0.227 6.227 21 C 0.102 3.898 22 O -0.227 6.227 23 C -0.253 4.253 24 C -0.198 4.198 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.100 0.900 37 H 0.147 0.853 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.622 -25.361 -0.753 25.987 hybrid contribution -0.033 0.560 0.798 0.976 sum 5.589 -24.801 0.045 25.423 Atomic orbital electron populations 1.69978 1.06054 1.26452 1.51113 1.25035 0.94856 0.99294 0.95400 0.86542 0.80149 0.83805 0.77547 1.19714 1.21028 1.21061 1.21283 0.93097 0.91002 1.50203 0.92597 1.19068 0.94005 0.91376 0.97113 1.21612 0.99219 0.92638 1.00887 1.22329 0.94367 0.90380 1.00467 1.60360 1.22757 0.99394 1.45127 1.20014 0.86116 0.88936 1.05065 1.18594 0.93345 0.91137 0.99354 1.20874 0.92346 0.98713 0.99061 1.20112 1.00908 0.87639 1.02818 1.19824 0.90588 0.87064 1.04747 1.19612 0.92558 0.84659 1.04427 1.19763 0.99988 0.88253 1.03775 1.87350 1.32997 1.14670 1.87672 1.25587 0.71243 0.92492 1.00512 1.87351 1.38578 1.13971 1.82830 1.23774 1.00618 1.03998 0.96956 1.23311 0.99750 1.03938 0.92763 0.93095 0.96597 0.96798 0.93522 0.92451 0.90863 0.94972 0.83728 0.83309 0.84544 0.84744 0.90002 0.85293 0.88677 0.87542 0.87466 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.12 5.46 -26.73 -0.15 -2.26 16 11 C 0.05 0.86 4.69 -3.82 -0.02 0.84 16 12 N -0.65 -8.92 5.90 -101.14 -0.60 -9.51 16 13 C 0.09 1.12 3.17 -132.75 -0.42 0.70 16 14 C -0.02 -0.27 5.67 -104.62 -0.59 -0.86 16 15 C -0.09 -0.99 9.33 -39.58 -0.37 -1.36 16 16 C -0.10 -1.00 10.06 -39.46 -0.40 -1.39 16 17 C 0.02 0.25 7.15 -39.09 -0.28 -0.03 16 18 C 0.03 0.37 7.15 -39.08 -0.28 0.09 16 19 C -0.10 -1.10 8.76 -39.47 -0.35 -1.44 16 20 O -0.31 -3.36 11.40 -45.69 -0.52 -3.88 16 21 C 0.21 1.63 8.89 101.05 0.90 2.53 16 22 O -0.31 -3.31 11.40 -45.69 -0.52 -3.83 16 23 C -0.21 -2.47 9.10 -26.70 -0.24 -2.72 16 24 C -0.16 -1.87 9.22 -26.70 -0.25 -2.12 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.22 6.03 -51.93 -0.31 0.91 16 31 H 0.03 0.53 6.55 -51.93 -0.34 0.19 16 32 H 0.34 4.36 8.04 -39.29 -0.32 4.05 16 33 H 0.15 1.50 6.90 -52.49 -0.36 1.13 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.13 1.33 6.49 -52.49 -0.34 0.99 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.97 7.02 -51.93 -0.36 0.61 16 39 H 0.11 1.34 6.18 -51.93 -0.32 1.02 16 40 H 0.11 1.36 6.32 -51.93 -0.33 1.03 16 41 H 0.10 0.99 7.61 -51.93 -0.40 0.60 16 LS Contribution 335.14 15.07 5.05 5.05 Total: -1.00 -31.55 335.14 -9.44 -40.99 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.58 Total: 1.80 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -2.99 Total: -21.06 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.14 Total: -35.72 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -1.04 Total: -7.71 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.55 -9.44 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342223754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.439 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds