Wall clock time and date at job start Tue Mar 31 2020 06:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47219 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47005 * 300.00652 * 3 2 1 6 6 H 1.48510 * 109.46752 * 59.99919 * 3 2 1 7 7 C 1.37870 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47522 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47054 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.46619 * 180.02562 * 11 10 9 13 13 C 1.46909 * 110.99637 * 185.01117 * 12 11 10 14 14 C 1.50699 * 115.54554 * 185.32359 * 13 12 11 15 15 C 1.38247 * 119.93163 * 354.93724 * 14 13 12 16 16 C 1.38242 * 120.14349 * 179.79380 * 15 14 13 17 17 C 1.38551 * 120.02614 * 0.47327 * 16 15 14 18 18 C 1.39264 * 119.82814 * 359.53048 * 17 16 15 19 19 C 1.38237 * 119.92183 * 174.96367 * 14 13 12 20 20 O 1.36502 * 108.64089 * 180.24511 * 18 17 16 21 21 C 1.43984 * 105.48543 * 342.71813 * 20 18 17 22 22 O 1.36502 * 131.53298 * 179.83275 * 17 16 15 23 23 C 1.52998 * 117.49731 * 330.99447 * 13 12 11 24 24 C 1.52995 * 117.49866 * 39.65383 * 13 12 11 25 25 H 0.97002 * 119.99538 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46518 * 59.99980 * 9 7 2 27 27 H 1.08999 * 109.47278 * 300.00505 * 9 7 2 28 28 H 1.08997 * 109.46797 * 59.99663 * 10 9 7 29 29 H 1.09005 * 109.46643 * 300.00228 * 10 9 7 30 30 H 1.08992 * 109.47496 * 60.00020 * 11 10 9 31 31 H 1.09002 * 109.46761 * 299.99300 * 11 10 9 32 32 H 1.00904 * 110.99982 * 61.06438 * 12 11 10 33 33 H 1.07998 * 119.92956 * 0.04740 * 15 14 13 34 34 H 1.07995 * 119.98536 * 180.33725 * 16 15 14 35 35 H 1.07997 * 119.98777 * 359.97438 * 19 14 13 36 36 H 1.08996 * 110.57276 * 268.55125 * 21 20 18 37 37 H 1.09000 * 110.69711 * 145.73400 * 21 20 18 38 38 H 1.09006 * 117.49546 * 215.00123 * 23 13 12 39 39 H 1.08993 * 117.50354 * 0.02562 * 23 13 12 40 40 H 1.09005 * 117.50155 * 359.97438 * 24 13 12 41 41 H 1.08998 * 117.50209 * 144.97366 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4804 -4.9870 -0.0025 12 7 2.4351 -6.1036 -0.0031 13 6 1.7387 -7.3915 -0.1235 14 6 2.6110 -8.6151 -0.0091 15 6 3.9829 -8.4773 0.0904 16 6 4.7869 -9.5966 0.1998 17 6 4.2194 -10.8605 0.2000 18 6 2.8373 -10.9993 0.0998 19 6 2.0374 -9.8728 -0.0045 20 8 2.5291 -12.3288 0.1275 21 6 3.7605 -13.0150 -0.1655 22 8 4.7772 -12.1031 0.2905 23 6 0.3181 -7.4816 0.4373 24 6 0.5439 -7.4622 -1.0765 25 1 -0.4849 0.8401 0.0004 26 1 0.6242 -2.5566 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.8727 -3.6047 0.8877 29 1 2.8714 -3.6039 -0.8923 30 1 0.8534 -5.0442 -0.8921 31 1 0.8542 -5.0454 0.8878 32 1 3.0165 -6.0826 0.8213 33 1 4.4273 -7.4930 0.0867 34 1 5.8579 -9.4858 0.2828 35 1 0.9653 -9.9775 -0.0824 36 1 3.8558 -13.1900 -1.2371 37 1 3.8168 -13.9560 0.3817 38 1 0.0143 -8.4260 0.8890 39 1 -0.1001 -6.5853 0.8952 40 1 0.2742 -6.5530 -1.6139 41 1 0.3889 -8.3936 -1.6211 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342223754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:33 Heat of formation + Delta-G solvation = -31.665156 kcal Electronic energy + Delta-G solvation = -21943.805172 eV Core-core repulsion = 18596.587585 eV Total energy + Delta-G solvation = -3347.217586 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.15194 -40.67241 -38.11328 -37.29125 -36.16689 -34.45864 -32.25714 -31.23739 -30.99090 -28.08891 -26.78418 -25.10759 -23.94251 -23.72337 -23.42036 -21.95204 -20.92527 -18.92375 -18.69560 -18.45596 -18.29451 -17.39181 -16.66887 -16.56454 -16.20763 -16.01318 -15.45028 -15.06734 -14.85540 -14.61983 -14.44652 -14.11985 -14.00737 -13.89971 -13.74129 -13.48464 -13.04291 -12.83773 -12.73410 -12.40049 -12.26165 -12.18478 -12.15215 -11.65729 -11.36671 -11.34438 -11.27170 -11.09737 -10.54281 -9.89184 -9.31287 -8.88909 -8.19028 -6.29455 0.04860 0.19173 1.41041 1.41465 1.54875 1.74825 2.40744 2.41695 2.47354 2.94615 3.14426 3.15615 3.44116 3.52686 3.72037 3.82341 4.03112 4.06284 4.18533 4.19325 4.24837 4.28417 4.41894 4.52778 4.58975 4.72152 4.72942 4.93294 4.97455 5.03800 5.06983 5.13994 5.19720 5.24879 5.28311 5.41089 5.44415 5.55378 5.77458 5.88151 6.01498 6.11039 6.28387 6.41455 6.87958 7.39797 8.93019 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040617 B = 0.002524 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.207631 B =11090.592456 C =11668.802787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.091 4.091 11 C 0.068 3.932 12 N -0.646 5.646 13 C 0.087 3.913 14 C -0.030 4.030 15 C -0.094 4.094 16 C -0.097 4.097 17 C 0.011 3.989 18 C 0.020 3.980 19 C -0.101 4.101 20 O -0.325 6.325 21 C 0.204 3.796 22 O -0.324 6.324 23 C -0.209 4.209 24 C -0.161 4.161 25 H 0.263 0.737 26 H -0.009 1.009 27 H -0.009 1.009 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.351 0.649 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.102 0.898 37 H 0.162 0.838 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 -26.298 -0.167 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.061 4.061 12 N -0.276 5.276 13 C -0.005 4.005 14 C -0.031 4.031 15 C -0.113 4.113 16 C -0.115 4.115 17 C -0.033 4.033 18 C -0.024 4.024 19 C -0.120 4.120 20 O -0.241 6.241 21 C 0.094 3.906 22 O -0.241 6.241 23 C -0.248 4.248 24 C -0.198 4.198 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.171 0.829 33 H 0.172 0.828 34 H 0.173 0.827 35 H 0.162 0.838 36 H 0.120 0.880 37 H 0.179 0.821 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.914 -26.337 -0.726 27.239 hybrid contribution -0.436 0.763 0.782 1.176 sum 6.478 -25.574 0.056 26.382 Atomic orbital electron populations 1.70106 1.07762 1.27641 1.51939 1.25987 0.95788 1.03380 0.94861 0.85406 0.79128 0.78825 0.77736 1.18556 1.20445 1.20399 1.21729 0.93561 0.92380 1.50102 0.92203 1.18970 0.94434 0.93082 0.94761 1.21348 0.98008 0.92583 1.00940 1.21989 0.94126 0.89691 1.00287 1.60226 1.22233 0.99420 1.45700 1.20024 0.86440 0.88366 1.05692 1.18546 0.93527 0.90834 1.00222 1.20979 0.92204 0.99172 0.98896 1.20322 1.01869 0.87212 1.02140 1.20055 0.90780 0.87682 1.04772 1.19771 0.92828 0.85151 1.04675 1.19837 1.00521 0.88039 1.03620 1.87321 1.34569 1.14411 1.87845 1.26101 0.69534 0.92589 1.02393 1.87324 1.39627 1.14004 1.83100 1.23766 0.99883 1.04263 0.96906 1.23359 0.99377 1.04206 0.92903 0.92829 0.99047 0.99048 0.92905 0.92772 0.91341 0.95058 0.82903 0.82779 0.82726 0.83792 0.88009 0.82135 0.87045 0.88760 0.88744 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 3 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.32 4.97 29.85 0.15 1.47 16 10 C -0.09 -3.65 5.46 30.59 0.17 -3.49 16 11 C 0.07 2.21 4.69 86.30 0.40 2.62 16 12 N -0.65 -17.23 5.90 -473.89 -2.80 -20.02 16 13 C 0.09 2.04 3.17 2.78 0.01 2.05 16 14 C -0.03 -0.66 5.67 -19.86 -0.11 -0.77 16 15 C -0.09 -1.90 9.33 22.27 0.21 -1.70 16 16 C -0.10 -1.87 10.06 22.35 0.22 -1.64 16 17 C 0.01 0.24 7.15 22.59 0.16 0.40 16 18 C 0.02 0.44 7.15 22.59 0.16 0.60 16 19 C -0.10 -2.11 8.76 22.34 0.20 -1.92 16 20 O -0.32 -6.54 11.40 -76.07 -0.87 -7.40 16 21 C 0.20 2.71 8.89 113.37 1.01 3.72 16 22 O -0.32 -6.38 11.40 -76.07 -0.87 -7.25 16 23 C -0.21 -4.62 9.10 30.62 0.28 -4.34 16 24 C -0.16 -3.62 9.22 30.62 0.28 -3.34 16 25 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 26 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 27 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.07 2.31 6.03 -2.39 -0.01 2.30 16 31 H 0.03 1.03 6.55 -2.39 -0.02 1.01 16 32 H 0.35 8.49 8.04 -89.69 -0.72 7.77 16 33 H 0.15 2.87 6.90 -2.91 -0.02 2.85 16 34 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.14 2.61 6.49 -2.91 -0.02 2.59 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.11 2.09 7.02 -2.38 -0.02 2.07 16 39 H 0.09 2.34 6.18 -2.39 -0.01 2.32 16 40 H 0.09 2.38 6.32 -2.38 -0.02 2.37 16 41 H 0.11 2.16 7.61 -2.39 -0.02 2.14 16 Total: -1.00 -67.57 335.14 1.94 -65.63 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.33 Total: 15.92 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 3.83 Total: -36.58 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -2.51 Total: -76.75 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -1.73 Total: -14.65 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.57 1.94 -65.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342223754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.962 kcal (2) G-P(sol) polarization free energy of solvation -67.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds