Wall clock time and date at job start Tue Mar 31 2020 06:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99927 * 2 1 4 4 H 1.48501 * 109.47174 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47390 * 300.00166 * 3 2 1 6 6 H 1.48506 * 109.47211 * 60.00408 * 3 2 1 7 7 C 1.37872 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99672 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46560 * 179.97438 * 9 7 2 11 11 N 1.46909 * 109.46376 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99457 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46779 * 179.97438 * 12 11 10 14 14 C 1.39916 * 126.03570 * 89.97759 * 13 12 11 15 15 N 1.30887 * 108.24160 * 180.02562 * 14 13 12 16 16 N 1.40084 * 108.21722 * 0.02562 * 15 14 13 17 17 C 1.40255 * 126.05019 * 179.97438 * 16 15 14 18 18 C 1.38829 * 120.04006 * 179.74648 * 17 16 15 19 19 C 1.38106 * 119.95751 * 179.74490 * 18 17 16 20 20 C 1.38478 * 120.04108 * 0.55259 * 19 18 17 21 21 F 1.35094 * 119.96042 * 179.71890 * 20 19 18 22 22 C 1.38484 * 120.07971 * 359.70145 * 20 19 18 23 23 C 1.38108 * 120.04667 * 0.02562 * 22 20 19 24 24 C 1.35203 * 107.89739 * 0.26045 * 16 15 14 25 25 H 0.97008 * 119.99914 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47132 * 59.99845 * 9 7 2 27 27 H 1.09001 * 109.46973 * 299.99628 * 9 7 2 28 28 H 1.08994 * 109.47427 * 60.00146 * 10 9 7 29 29 H 1.08994 * 109.47554 * 299.99348 * 10 9 7 30 30 H 1.00896 * 110.99778 * 56.04880 * 11 10 9 31 31 H 1.09000 * 109.47106 * 60.00330 * 12 11 10 32 32 H 1.08998 * 109.47319 * 300.00218 * 12 11 10 33 33 H 1.07998 * 125.87366 * 0.02562 * 14 13 12 34 34 H 1.08004 * 120.01907 * 0.02562 * 18 17 16 35 35 H 1.08004 * 119.97644 * 180.25629 * 19 18 17 36 36 H 1.08005 * 119.97738 * 180.02562 * 22 20 19 37 37 H 1.07989 * 120.02143 * 180.02562 * 23 22 20 38 38 H 1.08006 * 126.14380 * 179.71617 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5106 -4.9342 -0.0033 12 6 2.4352 -6.0759 -0.0049 13 6 1.6471 -7.3604 -0.0047 14 6 1.2151 -8.0611 -1.1361 15 7 0.5634 -9.1234 -0.7360 16 7 0.5592 -9.1327 0.6648 17 6 -0.0370 -10.1044 1.4819 18 6 0.0394 -9.9925 2.8636 19 6 -0.5527 -10.9475 3.6666 20 6 -1.2126 -12.0221 3.0944 21 9 -1.7864 -12.9582 3.8814 22 6 -1.2853 -12.1380 1.7163 23 6 -0.6992 -11.1821 0.9100 24 6 1.2260 -8.0360 1.0897 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5562 -0.8919 27 1 0.6240 -2.5574 0.8880 28 1 2.8719 -3.6051 0.8872 29 1 2.8719 -3.6036 -0.8927 30 1 0.8740 -4.9838 -0.7844 31 1 3.0638 -6.0356 0.8847 32 1 3.0625 -6.0341 -0.8952 33 1 1.3893 -7.7747 -2.1627 34 1 0.5578 -9.1569 3.3102 35 1 -0.4970 -10.8585 4.7415 36 1 -1.8007 -12.9766 1.2718 37 1 -0.7565 -11.2728 -0.1645 38 1 1.3948 -7.7516 2.1179 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344328291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:19 Heat of formation + Delta-G solvation = 56.636995 kcal Electronic energy + Delta-G solvation = -20779.872146 eV Core-core repulsion = 17345.316074 eV Total energy + Delta-G solvation = -3434.556072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.25383 -41.73472 -39.22762 -36.06826 -33.69659 -32.90547 -31.84697 -30.95333 -29.50955 -28.41606 -25.38659 -23.75730 -23.65922 -22.76738 -21.10978 -20.61676 -20.05855 -18.42479 -17.68878 -16.51922 -16.31469 -16.01415 -15.59823 -15.40421 -15.08836 -14.49448 -14.45070 -14.14568 -13.96038 -13.76666 -13.53038 -13.14516 -13.01872 -12.73324 -12.21769 -12.19014 -11.98920 -11.49864 -11.08181 -10.94454 -10.67618 -10.53103 -10.39680 -10.00302 -9.66657 -9.45904 -9.19624 -9.04649 -8.35850 -8.18930 -7.78273 -5.99876 -4.02492 0.35810 0.70096 1.86632 2.13300 2.61814 3.18895 3.30999 3.38437 3.42270 3.82210 4.06651 4.31187 4.43955 4.45488 4.58271 4.74746 4.91530 4.97483 5.08648 5.33441 5.36163 5.37322 5.39279 5.54482 5.62252 5.67252 5.79793 5.90903 6.09941 6.24253 6.33508 6.40791 6.47746 6.91275 6.97888 7.44151 7.48290 7.73673 7.82592 7.96051 8.08869 8.43462 9.05276 9.61410 11.11547 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.029918 B = 0.002293 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.664374 B =12209.641284 C =12703.906105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.689 5.689 12 C 0.132 3.868 13 C -0.209 4.209 14 C 0.069 3.931 15 N -0.295 5.295 16 N -0.330 5.330 17 C 0.163 3.837 18 C -0.115 4.115 19 C -0.123 4.123 20 C 0.082 3.918 21 F -0.138 7.138 22 C -0.128 4.128 23 C -0.095 4.095 24 C 0.070 3.930 25 H 0.260 0.740 26 H 0.013 0.987 27 H 0.025 0.975 28 H 0.058 0.942 29 H 0.016 0.984 30 H 0.337 0.663 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.189 0.811 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.434 -24.992 3.990 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.063 4.063 11 N -0.320 5.320 12 C 0.001 3.999 13 C -0.220 4.220 14 C -0.118 4.118 15 N -0.113 5.113 16 N -0.106 5.106 17 C 0.069 3.931 18 C -0.136 4.136 19 C -0.142 4.142 20 C 0.062 3.938 21 F -0.116 7.116 22 C -0.147 4.147 23 C -0.115 4.115 24 C -0.072 4.072 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.154 0.846 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.206 0.794 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.460 -25.979 4.376 26.349 hybrid contribution 1.036 1.640 -0.540 2.014 sum 0.577 -24.339 3.836 24.646 Atomic orbital electron populations 1.69988 1.06040 1.26473 1.50752 1.25014 0.94845 0.99253 0.95346 0.86533 0.80066 0.83793 0.77574 1.19762 1.21051 1.20992 1.21220 0.93024 0.91003 1.50707 0.92675 1.19073 0.94042 0.90447 0.97721 1.22173 0.96990 0.88411 0.98695 1.60673 1.19622 1.01720 1.49985 1.20186 0.92779 0.86124 1.00768 1.20236 1.09420 1.00879 0.91423 1.24051 0.95461 0.91994 1.00326 1.77396 1.23816 1.22695 0.87359 1.45703 1.42052 1.18032 1.04766 1.17574 0.97058 0.89549 0.88893 1.20717 1.01740 1.00612 0.90507 1.20952 0.98659 0.93404 1.01226 1.17700 0.98606 0.88889 0.88611 1.91512 1.82551 1.63482 1.74105 1.21047 1.01488 1.00675 0.91485 1.20748 0.97128 0.92244 1.01423 1.22404 0.96188 0.87775 1.00814 0.93051 0.96824 0.95690 0.92314 0.96560 0.84565 0.90709 0.94710 0.79416 0.83936 0.83647 0.83843 0.83469 0.80371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.64 5.23 -27.88 -0.15 0.49 16 10 C 0.07 1.33 5.62 -3.82 -0.02 1.31 16 11 N -0.69 -11.84 6.49 -115.05 -0.75 -12.58 16 12 C 0.13 1.78 6.17 -4.98 -0.03 1.75 16 13 C -0.21 -2.62 5.61 -105.03 -0.59 -3.21 16 14 C 0.07 0.84 11.96 -17.33 -0.21 0.63 16 15 N -0.29 -3.85 11.87 30.64 0.36 -3.48 16 16 N -0.33 -4.00 3.80 -10.69 -0.04 -4.04 16 17 C 0.16 1.69 6.69 -83.57 -0.56 1.13 16 18 C -0.11 -0.96 9.45 -39.41 -0.37 -1.33 16 19 C -0.12 -0.93 10.02 -39.54 -0.40 -1.33 16 20 C 0.08 0.69 7.30 -39.40 -0.29 0.41 16 21 F -0.14 -1.26 17.26 2.25 0.04 -1.22 16 22 C -0.13 -1.02 10.02 -39.54 -0.40 -1.41 16 23 C -0.10 -0.89 9.66 -39.41 -0.38 -1.27 16 24 C 0.07 0.82 10.71 -17.10 -0.18 0.64 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.34 5.74 8.72 -39.29 -0.34 5.40 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.14 0.93 6.74 -52.48 -0.35 0.58 16 35 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.15 1.36 7.69 -52.49 -0.40 0.96 16 38 H 0.18 1.62 7.04 -52.48 -0.37 1.25 16 LS Contribution 335.86 15.07 5.06 5.06 Total: -1.00 -32.11 335.86 -8.41 -40.52 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.82 Total: 1.06 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -3.98 Total: -15.67 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.31 Total: -46.29 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.11 -8.41 -40.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344328291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.154 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds