Wall clock time and date at job start Tue Mar 31 2020 06:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99927 * 2 1 4 4 H 1.48501 * 109.47174 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47390 * 300.00166 * 3 2 1 6 6 H 1.48506 * 109.47211 * 60.00408 * 3 2 1 7 7 C 1.37872 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99672 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46560 * 179.97438 * 9 7 2 11 11 N 1.46909 * 109.46376 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99457 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46779 * 179.97438 * 12 11 10 14 14 C 1.39916 * 126.03570 * 89.97759 * 13 12 11 15 15 N 1.30887 * 108.24160 * 180.02562 * 14 13 12 16 16 N 1.40084 * 108.21722 * 0.02562 * 15 14 13 17 17 C 1.40255 * 126.05019 * 179.97438 * 16 15 14 18 18 C 1.38829 * 120.04006 * 179.74648 * 17 16 15 19 19 C 1.38106 * 119.95751 * 179.74490 * 18 17 16 20 20 C 1.38478 * 120.04108 * 0.55259 * 19 18 17 21 21 F 1.35094 * 119.96042 * 179.71890 * 20 19 18 22 22 C 1.38484 * 120.07971 * 359.70145 * 20 19 18 23 23 C 1.38108 * 120.04667 * 0.02562 * 22 20 19 24 24 C 1.35203 * 107.89739 * 0.26045 * 16 15 14 25 25 H 0.97008 * 119.99914 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47132 * 59.99845 * 9 7 2 27 27 H 1.09001 * 109.46973 * 299.99628 * 9 7 2 28 28 H 1.08994 * 109.47427 * 60.00146 * 10 9 7 29 29 H 1.08994 * 109.47554 * 299.99348 * 10 9 7 30 30 H 1.00896 * 110.99778 * 56.04880 * 11 10 9 31 31 H 1.09000 * 109.47106 * 60.00330 * 12 11 10 32 32 H 1.08998 * 109.47319 * 300.00218 * 12 11 10 33 33 H 1.07998 * 125.87366 * 0.02562 * 14 13 12 34 34 H 1.08004 * 120.01907 * 0.02562 * 18 17 16 35 35 H 1.08004 * 119.97644 * 180.25629 * 19 18 17 36 36 H 1.08005 * 119.97738 * 180.02562 * 22 20 19 37 37 H 1.07989 * 120.02143 * 180.02562 * 23 22 20 38 38 H 1.08006 * 126.14380 * 179.71617 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5106 -4.9342 -0.0033 12 6 2.4352 -6.0759 -0.0049 13 6 1.6471 -7.3604 -0.0047 14 6 1.2151 -8.0611 -1.1361 15 7 0.5634 -9.1234 -0.7360 16 7 0.5592 -9.1327 0.6648 17 6 -0.0370 -10.1044 1.4819 18 6 0.0394 -9.9925 2.8636 19 6 -0.5527 -10.9475 3.6666 20 6 -1.2126 -12.0221 3.0944 21 9 -1.7864 -12.9582 3.8814 22 6 -1.2853 -12.1380 1.7163 23 6 -0.6992 -11.1821 0.9100 24 6 1.2260 -8.0360 1.0897 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5562 -0.8919 27 1 0.6240 -2.5574 0.8880 28 1 2.8719 -3.6051 0.8872 29 1 2.8719 -3.6036 -0.8927 30 1 0.8740 -4.9838 -0.7844 31 1 3.0638 -6.0356 0.8847 32 1 3.0625 -6.0341 -0.8952 33 1 1.3893 -7.7747 -2.1627 34 1 0.5578 -9.1569 3.3102 35 1 -0.4970 -10.8585 4.7415 36 1 -1.8007 -12.9766 1.2718 37 1 -0.7565 -11.2728 -0.1645 38 1 1.3948 -7.7516 2.1179 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344328291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:18 Heat of formation + Delta-G solvation = 37.527452 kcal Electronic energy + Delta-G solvation = -20780.700798 eV Core-core repulsion = 17345.316074 eV Total energy + Delta-G solvation = -3435.384724 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.93972 -42.60154 -39.92308 -37.49420 -35.18809 -34.27601 -32.67981 -32.16065 -30.64569 -29.62351 -26.85190 -25.05464 -24.46123 -23.78341 -22.39792 -21.88475 -21.01269 -19.18165 -18.50160 -18.40206 -17.22061 -16.80618 -16.71591 -16.40474 -16.29399 -16.04052 -15.30635 -15.20645 -15.05637 -14.72798 -14.41137 -14.23885 -14.12513 -13.84930 -13.48110 -13.40024 -13.35209 -12.88288 -12.81469 -12.39037 -12.16079 -11.89411 -11.62851 -11.36848 -11.27352 -11.17019 -10.54747 -10.29391 -10.01525 -9.22950 -8.94490 -8.18023 -6.29205 -0.37595 0.07271 1.04338 1.32659 1.42542 1.42668 1.56064 1.68211 2.42856 2.50418 3.15669 3.16971 3.33074 3.63056 3.69077 3.74787 3.86838 4.09376 4.19288 4.25652 4.36464 4.54901 4.61344 4.67391 4.71281 4.82041 4.84574 4.98358 5.00213 5.10695 5.13761 5.20702 5.48938 5.54862 5.62810 5.72424 5.82609 6.10681 6.18776 6.34653 6.54582 6.60177 6.89429 7.40248 8.94280 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.029918 B = 0.002293 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.664374 B =12209.641284 C =12703.906105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.084 3.916 11 N -0.695 5.695 12 C 0.139 3.861 13 C -0.227 4.227 14 C 0.065 3.935 15 N -0.320 5.320 16 N -0.333 5.333 17 C 0.135 3.865 18 C -0.112 4.112 19 C -0.118 4.118 20 C 0.075 3.925 21 F -0.142 7.142 22 C -0.125 4.125 23 C -0.103 4.103 24 C 0.072 3.928 25 H 0.263 0.737 26 H -0.011 1.011 27 H -0.007 1.007 28 H 0.062 0.938 29 H 0.022 0.978 30 H 0.336 0.664 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.208 0.792 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.162 0.838 37 H 0.143 0.857 38 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.608 -25.323 4.783 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.008 4.008 10 C -0.045 4.045 11 N -0.326 5.326 12 C 0.010 3.990 13 C -0.237 4.237 14 C -0.122 4.122 15 N -0.138 5.138 16 N -0.108 5.108 17 C 0.042 3.958 18 C -0.132 4.132 19 C -0.138 4.138 20 C 0.055 3.945 21 F -0.120 7.120 22 C -0.144 4.144 23 C -0.123 4.123 24 C -0.071 4.071 25 H 0.072 0.928 26 H 0.007 0.993 27 H 0.011 0.989 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.153 0.847 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.225 0.775 34 H 0.179 0.821 35 H 0.187 0.813 36 H 0.180 0.820 37 H 0.160 0.840 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.719 -26.349 5.171 26.861 hybrid contribution 0.600 1.623 -0.735 1.880 sum 1.320 -24.726 4.436 25.155 Atomic orbital electron populations 1.70126 1.07876 1.27656 1.51738 1.25997 0.95755 1.03456 0.94791 0.85370 0.79136 0.78664 0.77679 1.18367 1.20516 1.20474 1.21674 0.93638 0.92200 1.50407 0.91898 1.18939 0.94409 0.92494 0.94912 1.21778 0.95475 0.88106 0.99093 1.60592 1.20273 1.01588 1.50186 1.20151 0.92284 0.84941 1.01665 1.20170 1.10647 1.00877 0.92034 1.24415 0.94881 0.91598 1.01289 1.77354 1.24740 1.23464 0.88273 1.45845 1.41935 1.18389 1.04608 1.17932 0.98236 0.89889 0.89696 1.20946 1.01428 1.01198 0.89674 1.21224 0.97558 0.92560 1.02414 1.17894 0.98724 0.89108 0.88801 1.91506 1.82656 1.63687 1.74182 1.21214 1.00991 1.00785 0.91409 1.20789 0.97547 0.92566 1.01434 1.22827 0.95145 0.87310 1.01799 0.92841 0.99291 0.98877 0.91934 0.95991 0.84662 0.89865 0.93624 0.77534 0.82126 0.81289 0.81998 0.83964 0.78053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 3 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.58 5.23 29.85 0.16 1.74 16 10 C 0.08 3.39 5.62 86.30 0.49 3.88 16 11 N -0.70 -23.46 6.49 -517.91 -3.36 -26.82 16 12 C 0.14 3.54 6.17 85.55 0.53 4.07 16 13 C -0.23 -5.42 5.61 -20.13 -0.11 -5.53 16 14 C 0.07 1.53 11.96 85.24 1.02 2.55 16 15 N -0.32 -8.25 11.87 -56.97 -0.68 -8.93 16 16 N -0.33 -7.80 3.80 -187.72 -0.71 -8.51 16 17 C 0.13 2.68 6.69 38.07 0.25 2.94 16 18 C -0.11 -1.66 9.45 22.38 0.21 -1.45 16 19 C -0.12 -1.55 10.02 22.30 0.22 -1.33 16 20 C 0.07 1.14 7.30 22.39 0.16 1.31 16 21 F -0.14 -2.36 17.26 44.97 0.78 -1.59 16 22 C -0.12 -1.86 10.02 22.30 0.22 -1.63 16 23 C -0.10 -1.89 9.66 22.38 0.22 -1.67 16 24 C 0.07 1.58 10.71 83.50 0.89 2.48 16 25 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 26 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.34 11.43 8.72 -89.70 -0.78 10.65 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.21 3.69 8.06 -2.91 -0.02 3.66 16 34 H 0.16 1.71 6.74 -2.91 -0.02 1.69 16 35 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 36 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.14 2.67 7.69 -2.92 -0.02 2.65 16 38 H 0.20 3.23 7.04 -2.91 -0.02 3.21 16 Total: -1.00 -69.12 335.86 3.59 -65.54 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.30 Total: 13.81 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 4.96 Total: -22.67 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -4.47 Total: -101.13 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.78 Total: -1.59 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -69.12 3.59 -65.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344328291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.063 kcal (2) G-P(sol) polarization free energy of solvation -69.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds