Wall clock time and date at job start Tue Mar 31 2020 06:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 H 1.08995 * 108.64627 * 33.10800 * 14 13 11 16 16 C 1.52152 * 108.68437 * 151.08439 * 14 13 11 17 17 C 1.52871 * 110.79996 * 188.55670 * 16 14 13 18 18 C 1.51654 * 108.69680 * 276.69418 * 17 16 14 19 19 C 1.38025 * 119.98936 * 247.53177 * 18 17 16 20 20 C 1.38390 * 119.63773 * 182.12066 * 19 18 17 21 21 C 1.38282 * 120.07044 * 359.95811 * 20 19 18 22 22 C 1.38174 * 120.23307 * 359.56594 * 21 20 19 23 23 C 1.37946 * 119.45640 * 68.74365 * 18 17 16 24 24 O 1.36143 * 120.35146 * 357.28640 * 23 18 17 25 25 C 1.43136 * 115.60796 * 289.70346 * 24 23 18 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 32 32 H 1.08998 * 109.20996 * 308.90118 * 16 14 13 33 33 H 1.09000 * 109.20721 * 68.22498 * 16 14 13 34 34 H 1.08994 * 109.59739 * 156.93154 * 17 16 14 35 35 H 1.09004 * 109.73440 * 36.53026 * 17 16 14 36 36 H 1.08001 * 120.18047 * 2.13990 * 19 18 17 37 37 H 1.07995 * 119.96386 * 179.97438 * 20 19 18 38 38 H 1.07997 * 119.88623 * 179.55875 * 21 20 19 39 39 H 1.07998 * 120.15975 * 180.08561 * 22 21 20 40 40 H 1.09003 * 109.18132 * 326.38046 * 25 24 23 41 41 H 1.09001 * 109.18333 * 207.14047 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 1.4329 -7.4031 0.0008 15 1 0.5093 -7.2722 -0.5630 16 6 2.2815 -8.4560 -0.6966 17 6 1.4826 -9.7414 -0.9124 18 6 1.5344 -10.5654 0.3597 19 6 2.2127 -11.7673 0.3760 20 6 2.2184 -12.5344 1.5278 21 6 1.5482 -12.0965 2.6553 22 6 0.8778 -10.8883 2.6407 23 6 0.8788 -10.1151 1.4868 24 8 0.2365 -8.9148 1.4757 25 6 1.0824 -7.7610 1.4298 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 3.1354 -6.1345 0.0004 32 1 2.6090 -8.0708 -1.6622 33 1 3.1556 -8.6757 -0.0836 34 1 1.9189 -10.3094 -1.7340 35 1 0.4468 -9.4959 -1.1469 36 1 2.7364 -12.1072 -0.5053 37 1 2.7470 -13.4760 1.5462 38 1 1.5486 -12.7008 3.5503 39 1 0.3558 -10.5468 3.5224 40 1 1.9990 -7.9667 1.9827 41 1 0.5666 -6.9201 1.8935 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360549022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:17 Heat of formation + Delta-G solvation = -65.484186 kcal Electronic energy + Delta-G solvation = -22288.761951 eV Core-core repulsion = 18940.077862 eV Total energy + Delta-G solvation = -3348.684089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84860 -39.27009 -37.57913 -35.84573 -33.60185 -33.45010 -31.30693 -30.58409 -30.23604 -27.54586 -25.82773 -24.87394 -22.92028 -21.99659 -21.13746 -20.83760 -19.63563 -18.12874 -16.97610 -16.76897 -15.98532 -15.71567 -15.64442 -15.26708 -14.99302 -14.62273 -14.41544 -14.20949 -13.71655 -13.48835 -13.24494 -12.94182 -12.44665 -12.35254 -12.22254 -12.12127 -11.98509 -11.35923 -11.16744 -10.96672 -10.93203 -10.81310 -10.60090 -10.46900 -9.96807 -9.67976 -9.21528 -9.11745 -9.03814 -8.86228 -8.72880 -8.32409 -5.96414 -4.00974 0.95701 1.05561 3.08403 3.21376 3.33011 3.38515 3.40661 3.43274 3.88464 4.34648 4.42798 4.47131 4.64050 4.70904 4.84021 4.93764 5.02757 5.09910 5.20956 5.25805 5.36559 5.38503 5.43113 5.53172 5.64514 5.71254 5.78835 5.88220 6.01902 6.08931 6.19492 6.20562 6.22259 6.28283 6.46588 6.65404 6.87543 7.33310 7.73712 7.82641 7.85432 8.06664 8.37870 8.73162 9.07596 9.62622 11.14511 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.043436 B = 0.002660 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.474605 B =10523.575195 C =10706.980594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.529 6.529 13 N -0.739 5.739 14 C 0.114 3.886 15 H 0.094 0.906 16 C -0.123 4.123 17 C -0.076 4.076 18 C -0.114 4.114 19 C -0.102 4.102 20 C -0.130 4.130 21 C -0.110 4.110 22 C -0.131 4.131 23 C 0.099 3.901 24 O -0.321 6.321 25 C 0.061 3.939 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.398 0.602 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.056 0.944 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.648 -25.980 1.862 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.404 6.404 13 N -0.395 5.395 14 C 0.009 3.991 15 H 0.112 0.888 16 C -0.161 4.161 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.148 4.148 21 C -0.128 4.128 22 C -0.150 4.150 23 C 0.056 3.944 24 O -0.236 6.236 25 C -0.015 4.015 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.232 0.768 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.075 0.925 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.372 -25.792 1.873 26.634 hybrid contribution 1.130 0.879 0.028 1.431 sum 7.502 -24.913 1.900 26.088 Atomic orbital electron populations 1.70001 1.06054 1.26600 1.50141 1.25031 0.94831 0.99244 0.95309 0.86588 0.79757 0.83514 0.78064 1.20672 1.21213 1.19903 1.21216 0.92912 0.91016 1.51440 0.92620 1.18902 0.93172 0.89363 0.98657 1.21875 1.00732 0.91810 1.02534 1.21666 0.88756 0.85671 0.74165 1.90691 1.14390 1.87474 1.47813 1.46274 1.10004 1.05044 1.78180 1.20991 0.97397 0.84110 0.96648 0.88763 1.21630 0.98513 0.94323 1.01648 1.20689 1.01939 0.94616 0.94106 1.20302 0.98908 0.96545 0.95671 1.20967 0.98975 0.93633 0.98472 1.21186 1.00288 1.00047 0.93289 1.21033 0.97402 0.95789 0.98603 1.21344 1.00472 0.95969 0.97206 1.18598 0.95338 0.87892 0.92600 1.86362 1.32396 1.11573 1.93256 1.22981 0.94858 0.86953 0.96721 0.92932 0.95814 0.95793 0.90202 0.90175 0.76775 0.90099 0.91354 0.90229 0.89796 0.85591 0.85864 0.85673 0.85224 0.92513 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.13 -2.57 5.64 -27.88 -0.16 -2.73 16 11 C 0.51 9.50 7.72 -10.98 -0.08 9.42 16 12 O -0.53 -12.28 15.59 5.56 0.09 -12.19 16 13 N -0.74 -9.90 4.98 -55.01 -0.27 -10.18 16 14 C 0.11 1.44 2.27 -69.16 -0.16 1.29 16 15 H 0.09 1.45 7.33 -51.93 -0.38 1.07 16 16 C -0.12 -1.16 5.08 -27.23 -0.14 -1.29 16 17 C -0.08 -0.69 5.54 -27.48 -0.15 -0.85 16 18 C -0.11 -1.14 5.07 -104.34 -0.53 -1.67 16 19 C -0.10 -0.85 9.69 -39.60 -0.38 -1.23 16 20 C -0.13 -1.00 10.05 -39.51 -0.40 -1.40 16 21 C -0.11 -0.90 10.03 -39.59 -0.40 -1.30 16 22 C -0.13 -1.33 10.01 -39.36 -0.39 -1.73 16 23 C 0.10 1.16 5.61 -39.44 -0.22 0.94 16 24 O -0.32 -4.38 9.99 -20.20 -0.20 -4.58 16 25 C 0.06 0.79 5.99 36.36 0.22 1.01 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.40 4.08 8.61 -40.82 -0.35 3.73 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.58 7.89 -51.93 -0.41 0.17 16 34 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 35 H 0.08 0.87 7.89 -51.93 -0.41 0.46 16 36 H 0.13 0.77 7.98 -52.49 -0.42 0.35 16 37 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.06 0.65 7.90 -51.93 -0.41 0.24 16 41 H 0.11 1.58 8.08 -51.93 -0.42 1.16 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -34.29 340.72 -8.99 -43.29 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.13 Total: 0.98 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -3.32 Total: -12.34 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.46 Total: -36.92 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.12 Total: -16.77 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.29 -8.99 -43.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360549022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.195 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds