Wall clock time and date at job start Tue Mar 31 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47059 * 2 1 4 4 C 1.38803 * 119.99861 * 179.72440 * 3 2 1 5 5 C 1.39535 * 119.99648 * 0.28022 * 4 3 2 6 6 N 1.31712 * 120.01120 * 179.97438 * 5 4 3 7 7 C 1.33069 * 120.00484 * 359.97438 * 6 5 4 8 8 C 1.48367 * 120.00782 * 179.97438 * 7 6 5 9 9 N 1.30783 * 126.41875 * 179.68777 * 8 7 6 10 10 O 1.21291 * 110.08938 * 179.86182 * 9 8 7 11 11 C 1.33669 * 110.03628 * 0.40232 * 10 9 8 12 12 C 1.50698 * 126.43930 * 179.78748 * 11 10 9 13 13 C 1.53001 * 109.46740 * 269.95633 * 12 11 10 14 14 C 1.50702 * 109.46743 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00416 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99877 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00037 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99973 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46847 * 89.99340 * 18 16 14 20 20 H 1.48499 * 109.47012 * 209.99394 * 18 16 14 21 21 H 1.48496 * 109.46915 * 329.99061 * 18 16 14 22 22 N 1.30977 * 107.12493 * 359.74650 * 11 10 9 23 23 C 1.39245 * 119.98952 * 359.97438 * 7 6 5 24 24 N 1.32094 * 119.99143 * 359.76798 * 23 7 6 25 25 H 1.09003 * 109.47345 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47066 * 299.99732 * 1 2 3 27 27 H 1.09000 * 109.47665 * 59.99541 * 1 2 3 28 28 H 1.09004 * 109.47066 * 240.00268 * 2 1 3 29 29 H 1.08994 * 109.46974 * 120.00415 * 2 1 3 30 30 H 0.97001 * 120.00384 * 0.02562 * 3 2 1 31 31 H 1.08003 * 119.99555 * 359.97103 * 5 4 3 32 32 H 1.09003 * 109.46712 * 29.95008 * 12 11 10 33 33 H 1.09000 * 109.47289 * 149.95492 * 12 11 10 34 34 H 1.09003 * 109.47008 * 299.99194 * 13 12 11 35 35 H 1.09000 * 109.47345 * 59.99893 * 13 12 11 36 36 H 0.96993 * 119.99969 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.00833 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3829 1.6348 0.0058 5 6 4.2896 0.5742 0.0057 6 7 5.5846 0.8145 0.0107 7 6 6.0286 2.0690 0.0153 8 6 7.4873 2.3397 0.0214 9 7 8.0586 3.5162 0.0206 10 8 9.2653 3.3934 0.0295 11 6 9.5937 2.0977 0.0283 12 6 10.9889 1.5279 0.0329 13 6 11.4664 1.3370 -1.4081 14 6 12.8618 0.7678 -1.4036 15 1 13.3582 0.5623 -0.4667 16 6 13.5043 0.5083 -2.5955 17 7 14.7223 0.0120 -2.5916 18 14 12.6455 0.8629 -4.2161 19 1 12.9471 2.2531 -4.6423 20 1 13.1277 -0.0875 -5.2502 21 1 11.1790 0.7050 -4.0440 22 7 8.4752 1.4162 0.0233 23 6 5.1239 3.1275 0.0143 24 7 3.8252 2.8861 0.0042 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3880 2.1185 0.0004 31 1 3.9295 -0.4440 0.0016 32 1 11.6597 2.2139 0.5501 33 1 10.9868 0.5660 0.5455 34 1 10.7955 0.6510 -1.9253 35 1 11.4684 2.2989 -1.9207 36 1 15.1745 -0.1702 -3.4301 37 1 5.4839 4.1457 0.0176 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361261947.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:32 Heat of formation + Delta-G solvation = 114.179503 kcal Electronic energy + Delta-G solvation = -21250.676826 eV Core-core repulsion = 17838.535946 eV Total energy + Delta-G solvation = -3412.140880 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.21784 -41.28683 -37.33440 -35.68689 -34.69728 -34.26755 -32.73209 -31.86742 -30.61129 -29.20433 -26.27966 -25.28176 -25.01661 -23.05802 -22.98960 -21.76050 -20.55459 -18.38238 -17.99288 -17.76920 -17.32477 -16.67077 -16.26313 -15.92927 -15.36654 -14.87314 -14.84206 -14.37958 -14.02282 -13.86958 -13.27406 -12.86557 -12.75146 -12.68125 -12.40514 -12.17976 -11.93839 -11.80249 -11.76034 -11.29068 -11.06787 -10.80156 -10.68124 -10.38066 -10.18176 -9.87068 -9.51403 -9.40066 -9.34118 -8.60099 -8.16007 -6.10928 -4.11243 0.39750 0.88911 1.58238 2.47007 2.57681 3.16539 3.29530 3.36557 3.37564 3.42205 3.63059 3.88104 4.12744 4.18794 4.33793 4.40897 4.46866 4.59459 4.72669 4.93742 5.12717 5.21726 5.23155 5.27062 5.27349 5.43370 5.70515 5.89988 5.97001 6.07106 6.26065 6.28816 6.47938 6.89246 7.05372 7.18997 7.19425 7.60419 7.64305 8.41010 8.41477 8.91367 9.49910 11.01643 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.025316 B = 0.002872 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.775635 B = 9747.616680 C =10283.928722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.711 5.711 4 C 0.362 3.638 5 C 0.002 3.998 6 N -0.361 5.361 7 C 0.083 3.917 8 C 0.221 3.779 9 N -0.385 5.385 10 O 0.078 5.922 11 C 0.210 3.790 12 C -0.019 4.019 13 C -0.008 4.008 14 C -0.524 4.524 15 H 0.079 0.921 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.876 3.124 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.265 1.265 22 N -0.466 5.466 23 C 0.148 3.852 24 N -0.503 5.503 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.408 0.592 31 H 0.171 0.829 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.027 0.973 35 H 0.020 0.980 36 H 0.265 0.735 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.470 2.445 6.233 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.344 5.344 4 C 0.121 3.879 5 C -0.170 4.170 6 N -0.075 5.075 7 C -0.057 4.057 8 C -0.050 4.050 9 N -0.095 5.095 10 O 0.018 5.982 11 C -0.010 4.010 12 C -0.058 4.058 13 C -0.047 4.047 14 C -0.562 4.562 15 H 0.097 0.903 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.703 3.297 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.190 1.190 22 N -0.198 5.198 23 C -0.015 4.015 24 N -0.225 5.225 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.244 0.756 31 H 0.188 0.812 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -28.046 2.550 6.102 28.815 hybrid contribution -0.459 0.395 -0.986 1.157 sum -28.504 2.945 5.116 29.109 Atomic orbital electron populations 1.21976 0.93714 1.03609 1.02929 1.21522 0.95327 0.81778 1.02262 1.44541 1.02102 1.08676 1.79099 1.19590 0.86973 0.90738 0.90621 1.23176 0.87771 0.99708 1.06331 1.68089 1.14801 1.21025 1.03594 1.18433 0.88616 0.90290 1.08389 1.23048 0.94444 0.85026 1.02511 1.74785 0.90469 1.22127 1.22101 1.85266 1.16880 1.30280 1.65755 1.29720 0.99839 0.79094 0.92310 1.20569 0.81073 1.01096 1.03065 1.19636 0.97955 0.97499 0.89610 1.20927 0.97333 1.42968 0.94961 0.90322 1.24946 0.94635 0.94320 0.99083 1.69890 1.12362 1.44067 1.27210 0.86837 0.80672 0.78475 0.83749 1.20089 1.21167 1.18987 1.72180 0.96801 1.30304 1.20518 1.23363 0.86895 1.00468 0.90788 1.68056 1.15832 1.19918 1.18683 0.90262 0.91720 0.91707 0.91150 0.91176 0.75584 0.81193 0.88329 0.87450 0.95491 0.96219 0.92511 0.80566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.41 10.03 37.16 0.37 -0.04 16 2 C 0.12 0.48 5.62 -4.04 -0.02 0.46 16 3 N -0.71 -4.85 5.72 -60.29 -0.34 -5.20 16 4 C 0.36 3.81 7.66 -154.79 -1.19 2.62 16 5 C 0.00 0.02 10.48 -17.12 -0.18 -0.16 16 6 N -0.36 -5.54 10.43 -9.40 -0.10 -5.64 16 7 C 0.08 1.31 6.75 -82.79 -0.56 0.75 16 8 C 0.22 3.97 7.91 -156.11 -1.24 2.73 16 9 N -0.39 -6.70 11.84 30.97 0.37 -6.33 16 10 O 0.08 1.38 11.29 18.04 0.20 1.58 16 11 C 0.21 3.87 7.75 -12.98 -0.10 3.77 16 12 C -0.02 -0.35 5.78 -27.88 -0.16 -0.51 16 13 C -0.01 -0.19 4.02 -27.88 -0.11 -0.31 16 14 C -0.52 -14.19 9.66 -34.44 -0.33 -14.52 16 15 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 18 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 22 N -0.47 -9.12 11.57 -9.88 -0.11 -9.23 16 23 C 0.15 1.95 10.86 -17.06 -0.19 1.76 16 24 N -0.50 -6.13 10.52 -11.99 -0.13 -6.25 16 25 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 26 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.28 7.94 -51.93 -0.41 -0.13 16 29 H 0.07 0.26 7.93 -51.93 -0.41 -0.15 16 30 H 0.41 2.38 8.60 -40.82 -0.35 2.03 16 31 H 0.17 1.38 6.71 -52.48 -0.35 1.03 16 32 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 34 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 35 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.18 2.04 7.86 -52.49 -0.41 1.63 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -32.94 326.36 -7.30 -40.23 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -4.41 Total: -3.27 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -3.80 Total: -1.48 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.46 Total: -58.79 kcal Atomic # 8 Polarization: 1.38 SS G_CDS: 0.20 Total: 1.58 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.94 -7.30 -40.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361261947.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.411 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds