Wall clock time and date at job start Tue Mar 31 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47059 * 2 1 4 4 C 1.38803 * 119.99861 * 179.72440 * 3 2 1 5 5 C 1.39535 * 119.99648 * 0.28022 * 4 3 2 6 6 N 1.31712 * 120.01120 * 179.97438 * 5 4 3 7 7 C 1.33069 * 120.00484 * 359.97438 * 6 5 4 8 8 C 1.48367 * 120.00782 * 179.97438 * 7 6 5 9 9 N 1.30783 * 126.41875 * 179.68777 * 8 7 6 10 10 O 1.21291 * 110.08938 * 179.86182 * 9 8 7 11 11 C 1.33669 * 110.03628 * 0.40232 * 10 9 8 12 12 C 1.50698 * 126.43930 * 179.78748 * 11 10 9 13 13 C 1.53001 * 109.46740 * 269.95633 * 12 11 10 14 14 C 1.50702 * 109.46743 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00416 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99877 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00037 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99973 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46847 * 89.99340 * 18 16 14 20 20 H 1.48499 * 109.47012 * 209.99394 * 18 16 14 21 21 H 1.48496 * 109.46915 * 329.99061 * 18 16 14 22 22 N 1.30977 * 107.12493 * 359.74650 * 11 10 9 23 23 C 1.39245 * 119.98952 * 359.97438 * 7 6 5 24 24 N 1.32094 * 119.99143 * 359.76798 * 23 7 6 25 25 H 1.09003 * 109.47345 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47066 * 299.99732 * 1 2 3 27 27 H 1.09000 * 109.47665 * 59.99541 * 1 2 3 28 28 H 1.09004 * 109.47066 * 240.00268 * 2 1 3 29 29 H 1.08994 * 109.46974 * 120.00415 * 2 1 3 30 30 H 0.97001 * 120.00384 * 0.02562 * 3 2 1 31 31 H 1.08003 * 119.99555 * 359.97103 * 5 4 3 32 32 H 1.09003 * 109.46712 * 29.95008 * 12 11 10 33 33 H 1.09000 * 109.47289 * 149.95492 * 12 11 10 34 34 H 1.09003 * 109.47008 * 299.99194 * 13 12 11 35 35 H 1.09000 * 109.47345 * 59.99893 * 13 12 11 36 36 H 0.96993 * 119.99969 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.00833 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3829 1.6348 0.0058 5 6 4.2896 0.5742 0.0057 6 7 5.5846 0.8145 0.0107 7 6 6.0286 2.0690 0.0153 8 6 7.4873 2.3397 0.0214 9 7 8.0586 3.5162 0.0206 10 8 9.2653 3.3934 0.0295 11 6 9.5937 2.0977 0.0283 12 6 10.9889 1.5279 0.0329 13 6 11.4664 1.3370 -1.4081 14 6 12.8618 0.7678 -1.4036 15 1 13.3582 0.5623 -0.4667 16 6 13.5043 0.5083 -2.5955 17 7 14.7223 0.0120 -2.5916 18 14 12.6455 0.8629 -4.2161 19 1 12.9471 2.2531 -4.6423 20 1 13.1277 -0.0875 -5.2502 21 1 11.1790 0.7050 -4.0440 22 7 8.4752 1.4162 0.0233 23 6 5.1239 3.1275 0.0143 24 7 3.8252 2.8861 0.0042 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3880 2.1185 0.0004 31 1 3.9295 -0.4440 0.0016 32 1 11.6597 2.2139 0.5501 33 1 10.9868 0.5660 0.5455 34 1 10.7955 0.6510 -1.9253 35 1 11.4684 2.2989 -1.9207 36 1 15.1745 -0.1702 -3.4301 37 1 5.4839 4.1457 0.0176 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361261947.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:32 Heat of formation + Delta-G solvation = 89.707835 kcal Electronic energy + Delta-G solvation = -21251.737997 eV Core-core repulsion = 17838.535946 eV Total energy + Delta-G solvation = -3413.202051 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.58207 -42.19903 -38.04687 -37.04241 -36.20073 -35.29214 -34.47852 -32.89917 -31.99620 -30.03640 -28.04784 -26.24316 -25.98301 -24.39993 -23.70260 -23.11236 -22.05566 -19.44635 -19.20943 -19.00500 -18.74296 -18.10473 -17.42360 -16.56238 -16.35261 -16.00863 -15.79094 -15.62272 -15.48991 -15.16441 -14.71913 -14.50804 -13.67659 -13.61119 -13.49422 -13.16381 -12.89852 -12.77014 -12.72443 -12.67560 -12.43960 -12.28171 -12.14575 -11.94629 -11.77052 -11.43839 -11.35171 -10.85133 -10.75409 -10.34971 -8.96589 -8.28010 -6.31889 -0.63513 -0.06298 0.25309 1.29138 1.36229 1.39098 1.49100 1.77009 1.78697 2.23330 2.36151 2.64261 2.70210 3.07574 3.18637 3.38752 3.54022 3.82951 4.03843 4.06754 4.22306 4.34655 4.37168 4.41986 4.49205 4.53665 4.76981 4.85963 4.90931 5.04514 5.06109 5.26578 5.27934 5.37998 5.56500 5.59471 6.17233 6.25136 6.35901 6.73615 6.75512 7.04937 7.32388 8.87614 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.025316 B = 0.002872 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.775635 B = 9747.616680 C =10283.928722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 N -0.692 5.692 4 C 0.371 3.629 5 C 0.007 3.993 6 N -0.393 5.393 7 C 0.041 3.959 8 C 0.222 3.778 9 N -0.387 5.387 10 O 0.077 5.923 11 C 0.211 3.789 12 C -0.008 4.008 13 C -0.005 4.005 14 C -0.525 4.525 15 H 0.054 0.946 16 C 0.014 3.986 17 N -0.942 5.942 18 Si 0.937 3.063 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.259 1.259 22 N -0.490 5.490 23 C 0.159 3.841 24 N -0.516 5.516 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.415 0.585 31 H 0.202 0.798 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.017 0.983 35 H 0.026 0.974 36 H 0.267 0.733 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.620 2.540 5.953 31.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.017 4.017 3 N -0.323 5.323 4 C 0.127 3.873 5 C -0.167 4.167 6 N -0.107 5.107 7 C -0.098 4.098 8 C -0.049 4.049 9 N -0.097 5.097 10 O 0.019 5.981 11 C -0.009 4.009 12 C -0.047 4.047 13 C -0.043 4.043 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.184 4.184 17 N -0.583 5.583 18 Si 0.761 3.239 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.183 1.183 22 N -0.223 5.223 23 C -0.004 4.004 24 N -0.239 5.239 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.252 0.748 31 H 0.218 0.782 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.035 0.965 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -31.222 2.669 5.833 31.874 hybrid contribution 0.267 0.270 -0.817 0.901 sum -30.955 2.938 5.016 31.496 Atomic orbital electron populations 1.21959 0.92212 1.04525 1.03034 1.21837 0.96567 0.80149 1.03161 1.44842 1.00722 1.10381 1.76347 1.19826 0.88344 0.90159 0.88970 1.23673 0.86696 1.01305 1.05009 1.67991 1.16787 1.21271 1.04664 1.18399 0.87761 0.91280 1.12329 1.23479 0.95432 0.84597 1.01431 1.74756 0.90213 1.21994 1.22752 1.85249 1.17164 1.29806 1.65866 1.29490 0.99459 0.79419 0.92556 1.20356 0.81642 1.02149 1.00549 1.19493 0.95305 0.97038 0.92487 1.21246 0.99016 1.42042 0.93981 0.92739 1.25788 0.95262 0.94484 1.02825 1.70018 1.14058 1.45968 1.28217 0.85856 0.79725 0.78757 0.79528 1.18932 1.20880 1.18320 1.72162 0.97567 1.31337 1.21253 1.23412 0.87012 1.00283 0.89679 1.68149 1.15133 1.20689 1.19959 0.88943 0.91561 0.91676 0.90300 0.90130 0.74762 0.78158 0.86185 0.87028 0.96475 0.95553 0.92373 0.79695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.27 10.03 71.98 0.72 0.45 16 2 C 0.11 0.52 5.62 86.38 0.49 1.00 16 3 N -0.69 -7.36 5.72 -344.66 -1.97 -9.33 16 4 C 0.37 6.97 7.66 133.13 1.02 7.99 16 5 C 0.01 0.15 10.48 85.02 0.89 1.04 16 6 N -0.39 -11.78 10.43 -183.65 -1.92 -13.69 16 7 C 0.04 1.27 6.75 41.90 0.28 1.56 16 8 C 0.22 7.95 7.91 137.27 1.09 9.03 16 9 N -0.39 -13.33 11.84 -59.11 -0.70 -14.03 16 10 O 0.08 2.69 11.29 74.61 0.84 3.53 16 11 C 0.21 7.67 7.75 88.35 0.68 8.35 16 12 C -0.01 -0.30 5.78 29.85 0.17 -0.12 16 13 C 0.00 -0.21 4.02 29.85 0.12 -0.09 16 14 C -0.52 -28.65 9.66 25.60 0.25 -28.40 16 15 H 0.05 3.16 7.99 -2.91 -0.02 3.14 16 16 C 0.01 0.82 5.47 84.65 0.46 1.28 16 17 N -0.94 -57.46 13.96 21.45 0.30 -57.16 16 18 Si 0.94 44.15 27.47 68.60 1.88 46.04 16 19 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.26 -11.84 6.54 99.48 0.65 -11.19 16 22 N -0.49 -19.14 11.57 -302.50 -3.50 -22.64 16 23 C 0.16 4.07 10.86 84.90 0.92 4.99 16 24 N -0.52 -11.78 10.52 -191.84 -2.02 -13.79 16 25 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 26 H 0.07 0.12 8.14 -2.38 -0.02 0.10 16 27 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.08 0.33 7.94 -2.38 -0.02 0.32 16 29 H 0.08 0.31 7.93 -2.39 -0.02 0.29 16 30 H 0.41 3.61 8.60 -92.71 -0.80 2.81 16 31 H 0.20 2.65 6.71 -2.91 -0.02 2.63 16 32 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 33 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 34 H 0.02 0.80 7.20 -2.39 -0.02 0.79 16 35 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.19 4.19 7.86 -2.91 -0.02 4.16 16 Total: -1.00 -71.42 326.36 0.28 -71.14 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 0.26 Total: 2.86 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 7.10 Total: 7.08 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -9.81 Total: -130.65 kcal Atomic # 8 Polarization: 2.69 SS G_CDS: 0.84 Total: 3.53 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.04 kcal Total: -71.42 0.28 -71.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361261947.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.847 kcal (2) G-P(sol) polarization free energy of solvation -71.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds