Wall clock time and date at job start Tue Mar 31 2020 06:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39691 * 120.17358 * 112.91363 * 3 2 1 5 5 C 1.37866 * 119.87614 * 179.97438 * 4 3 2 6 6 C 1.38442 * 120.21706 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.82784 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.46959 * 270.01947 * 7 6 5 9 9 C 1.46898 * 110.99880 * 294.30274 * 8 7 6 10 10 C 1.53243 * 109.33635 * 172.74561 * 9 8 7 11 11 N 1.47071 * 108.52060 * 53.83036 * 10 9 8 12 12 C 1.36942 * 120.88246 * 128.84016 * 11 10 9 13 13 H 1.08005 * 119.99532 * 206.56322 * 12 11 10 14 14 C 1.38812 * 120.00229 * 26.55347 * 12 11 10 15 15 N 1.31618 * 119.99469 * 17.02671 * 14 12 11 16 16 Si 1.86793 * 120.00392 * 197.01943 * 14 12 11 17 17 H 1.48506 * 109.47005 * 90.00118 * 16 14 12 18 18 H 1.48492 * 109.47349 * 210.00570 * 16 14 12 19 19 H 1.48508 * 109.46936 * 330.00531 * 16 14 12 20 20 C 1.47085 * 118.23929 * 308.80921 * 11 10 9 21 21 C 1.46894 * 110.99969 * 169.99735 * 8 7 6 22 22 C 1.38233 * 120.34770 * 0.02562 * 6 5 4 23 23 C 1.38283 * 120.12495 * 359.97438 * 22 6 5 24 24 F 1.35098 * 120.11076 * 179.97438 * 23 22 6 25 25 H 1.08000 * 120.05537 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.89431 * 180.02562 * 5 4 3 27 27 H 1.08996 * 109.46806 * 30.01776 * 7 6 5 28 28 H 1.09000 * 109.47499 * 150.02250 * 7 6 5 29 29 H 1.09005 * 109.49149 * 292.70380 * 9 8 7 30 30 H 1.08993 * 109.49526 * 52.78496 * 9 8 7 31 31 H 1.08995 * 109.62843 * 294.11339 * 10 9 8 32 32 H 1.09004 * 109.62642 * 173.53759 * 10 9 8 33 33 H 0.97007 * 120.00050 * 179.97438 * 15 14 12 34 34 H 1.08994 * 109.62729 * 291.47991 * 20 11 10 35 35 H 1.09001 * 109.78867 * 170.99391 * 20 11 10 36 36 H 1.09005 * 109.49641 * 307.21479 * 21 8 7 37 37 H 1.09000 * 109.49689 * 67.29550 * 21 8 7 38 38 H 1.08006 * 119.94062 * 179.69990 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 0.4711 -1.1123 5 6 4.6486 0.4695 -1.1055 6 6 5.3393 0.0026 -0.0003 7 6 6.8463 0.0053 -0.0021 8 7 7.3376 -1.2692 -0.5429 9 6 6.9839 -2.3876 0.3414 10 6 7.3512 -3.7096 -0.3409 11 7 8.7664 -3.6536 -0.7370 12 6 9.6323 -4.6581 -0.3956 13 1 10.6871 -4.4500 -0.2926 14 6 9.1543 -5.9437 -0.1819 15 7 7.9607 -6.2833 -0.6204 16 14 10.2050 -7.1916 0.7280 17 1 9.9204 -7.1111 2.1833 18 1 9.8891 -8.5568 0.2366 19 1 11.6409 -6.8989 0.4874 20 6 9.2271 -2.4902 -1.5103 21 6 8.7860 -1.2162 -0.7820 22 6 4.6539 -0.4660 1.1049 23 6 3.2711 -0.4708 1.1134 24 9 2.6016 -0.9294 2.1935 25 1 2.7335 0.8355 -1.9760 26 1 5.1915 0.8335 -1.9652 27 1 7.2074 0.8262 -0.6216 28 1 7.2107 0.1319 1.0174 29 1 7.5326 -2.2974 1.2790 30 1 5.9130 -2.3674 0.5428 31 1 6.7289 -3.8509 -1.2245 32 1 7.1980 -4.5353 0.3542 33 1 7.6267 -7.1818 -0.4714 34 1 8.7851 -2.5143 -2.5063 35 1 10.3139 -2.5080 -1.5915 36 1 9.0219 -0.3465 -1.3953 37 1 9.3096 -1.1423 0.1712 38 1 5.1995 -0.8333 1.9617 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361861162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:41 Heat of formation + Delta-G solvation = 45.508619 kcal Electronic energy + Delta-G solvation = -22299.634117 eV Core-core repulsion = 18864.595482 eV Total energy + Delta-G solvation = -3435.038634 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.19999 -39.81949 -38.00366 -36.64268 -34.62737 -32.35754 -31.02600 -30.80262 -29.95567 -27.64235 -25.25301 -23.30947 -23.01807 -22.51790 -21.56716 -19.39616 -19.13387 -17.18623 -16.84771 -16.76273 -16.00098 -15.27283 -15.12597 -14.60289 -14.54086 -14.42849 -13.90324 -13.83633 -13.63333 -13.46890 -13.23564 -13.14134 -12.90529 -12.71978 -12.17373 -11.92899 -11.68630 -11.46053 -11.41309 -11.06999 -10.78187 -10.50105 -10.36638 -10.10168 -9.81073 -9.68337 -9.22849 -8.93871 -8.53716 -7.95569 -6.70496 -5.80654 -3.22206 0.38394 0.92259 2.41255 2.65711 3.36242 3.43315 3.44557 3.45367 3.56830 3.83364 4.30898 4.46379 4.49388 4.57087 4.91609 4.97008 5.27192 5.34744 5.36984 5.39709 5.57590 5.62420 5.75472 5.82222 5.85801 5.87058 6.06588 6.15253 6.22818 6.28615 6.47047 6.48936 6.63511 6.87633 7.18489 7.23569 7.44586 7.57696 7.65002 7.78221 8.40636 9.18519 9.81795 10.39691 11.28072 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.021152 B = 0.003871 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.408359 B = 7230.875108 C = 7962.511001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.258 3.742 3 C -0.072 4.072 4 C -0.042 4.042 5 C -0.109 4.109 6 C -0.006 4.006 7 C 0.082 3.918 8 N -0.526 5.526 9 C 0.029 3.971 10 C 0.179 3.821 11 N -0.595 5.595 12 C -0.254 4.254 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.902 5.902 16 Si 0.902 3.098 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.279 1.279 20 C 0.149 3.851 21 C 0.045 3.955 22 C -0.147 4.147 23 C 0.148 3.852 24 F -0.129 7.129 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.026 0.974 30 H 0.064 0.936 31 H 0.027 0.973 32 H 0.088 0.912 33 H 0.254 0.746 34 H 0.026 0.974 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.030 0.970 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 15.927 0.855 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.058 4.058 3 C -0.076 4.076 4 C -0.063 4.063 5 C -0.128 4.128 6 C -0.008 4.008 7 C -0.046 4.046 8 N -0.251 5.251 9 C -0.100 4.100 10 C 0.053 3.947 11 N -0.319 5.319 12 C -0.383 4.383 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.547 5.547 16 Si 0.732 3.268 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.205 1.205 20 C 0.022 3.978 21 C -0.084 4.084 22 C -0.167 4.167 23 C 0.126 3.874 24 F -0.107 7.107 25 H 0.160 0.840 26 H 0.161 0.839 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.637 15.634 0.454 16.991 hybrid contribution 1.119 -0.758 1.490 2.012 sum -5.519 14.876 1.944 15.985 Atomic orbital electron populations 1.81233 1.11847 1.08626 1.07087 1.25389 0.92372 0.93872 0.94127 1.15961 0.84832 1.10021 0.96795 1.21064 0.94202 0.95336 0.95674 1.21044 0.93023 1.00286 0.98452 1.19955 0.96414 0.92454 0.91943 1.21192 0.89350 0.94578 0.99478 1.62040 1.14711 1.01371 1.46974 1.23047 0.99123 0.93602 0.94221 1.20852 0.84369 0.91882 0.97634 1.44132 1.06566 1.20312 1.60859 1.19200 0.90734 0.87321 1.41089 0.91599 1.25022 0.97276 0.96716 1.00613 1.70026 1.18661 1.19031 1.46957 0.86292 0.79878 0.80815 0.79795 1.21490 1.21730 1.20466 1.20967 0.97177 0.86197 0.93472 1.22658 0.86388 1.00030 0.99348 1.21078 0.91334 1.03116 1.01153 1.17568 0.89960 0.96897 0.83014 1.91549 1.80546 1.86018 1.52613 0.84016 0.83940 0.89535 0.93793 0.95526 0.91746 0.95536 0.89352 0.93575 0.95624 0.92542 0.91789 0.95206 0.83723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.89 18.54 41.84 0.78 -5.11 16 2 C 0.26 3.17 14.98 -22.47 -0.34 2.84 16 3 C -0.07 -0.76 5.74 -106.82 -0.61 -1.37 16 4 C -0.04 -0.36 9.76 -39.18 -0.38 -0.74 16 5 C -0.11 -0.95 9.67 -39.64 -0.38 -1.33 16 6 C -0.01 -0.06 4.90 -104.55 -0.51 -0.58 16 7 C 0.08 0.90 5.11 -4.97 -0.03 0.88 16 8 N -0.53 -8.06 4.62 -235.76 -1.09 -9.14 16 9 C 0.03 0.52 5.33 -3.70 -0.02 0.50 16 10 C 0.18 4.14 5.42 -3.60 -0.02 4.12 16 11 N -0.60 -14.49 3.04 -172.01 -0.52 -15.02 16 12 C -0.25 -6.81 9.63 -15.06 -0.15 -6.95 16 13 H 0.07 1.73 7.88 -52.48 -0.41 1.32 16 14 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 15 N -0.90 -25.81 11.15 55.49 0.62 -25.19 16 16 Si 0.90 21.33 29.59 -169.99 -5.03 16.31 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.15 2.95 6.69 -3.60 -0.02 2.93 16 21 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 22 C -0.15 -1.58 7.82 -39.57 -0.31 -1.89 16 23 C 0.15 1.67 7.28 -38.95 -0.28 1.39 16 24 F -0.13 -1.63 16.81 2.25 0.04 -1.59 16 25 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 26 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 28 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 1.05 5.65 -51.93 -0.29 0.76 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 2.30 6.12 -51.93 -0.32 1.98 16 33 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 1.08 7.96 -51.93 -0.41 0.67 16 36 H 0.06 0.82 7.99 -51.93 -0.41 0.41 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.15 1.48 7.91 -52.48 -0.42 1.06 16 LS Contribution 324.42 15.07 4.89 4.89 Total: -1.00 -30.37 324.42 -8.25 -38.62 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -4.77 Total: -4.22 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -3.16 Total: 0.46 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.22 Total: -54.46 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.37 -8.25 -38.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361861162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.127 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds