Wall clock time and date at job start Tue Mar 31 2020 06:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39691 * 120.17358 * 112.91363 * 3 2 1 5 5 C 1.37866 * 119.87614 * 179.97438 * 4 3 2 6 6 C 1.38442 * 120.21706 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.82784 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.46959 * 270.01947 * 7 6 5 9 9 C 1.46898 * 110.99880 * 294.30274 * 8 7 6 10 10 C 1.53243 * 109.33635 * 172.74561 * 9 8 7 11 11 N 1.47071 * 108.52060 * 53.83036 * 10 9 8 12 12 C 1.36942 * 120.88246 * 128.84016 * 11 10 9 13 13 H 1.08005 * 119.99532 * 206.56322 * 12 11 10 14 14 C 1.38812 * 120.00229 * 26.55347 * 12 11 10 15 15 N 1.31618 * 119.99469 * 17.02671 * 14 12 11 16 16 Si 1.86793 * 120.00392 * 197.01943 * 14 12 11 17 17 H 1.48506 * 109.47005 * 90.00118 * 16 14 12 18 18 H 1.48492 * 109.47349 * 210.00570 * 16 14 12 19 19 H 1.48508 * 109.46936 * 330.00531 * 16 14 12 20 20 C 1.47085 * 118.23929 * 308.80921 * 11 10 9 21 21 C 1.46894 * 110.99969 * 169.99735 * 8 7 6 22 22 C 1.38233 * 120.34770 * 0.02562 * 6 5 4 23 23 C 1.38283 * 120.12495 * 359.97438 * 22 6 5 24 24 F 1.35098 * 120.11076 * 179.97438 * 23 22 6 25 25 H 1.08000 * 120.05537 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.89431 * 180.02562 * 5 4 3 27 27 H 1.08996 * 109.46806 * 30.01776 * 7 6 5 28 28 H 1.09000 * 109.47499 * 150.02250 * 7 6 5 29 29 H 1.09005 * 109.49149 * 292.70380 * 9 8 7 30 30 H 1.08993 * 109.49526 * 52.78496 * 9 8 7 31 31 H 1.08995 * 109.62843 * 294.11339 * 10 9 8 32 32 H 1.09004 * 109.62642 * 173.53759 * 10 9 8 33 33 H 0.97007 * 120.00050 * 179.97438 * 15 14 12 34 34 H 1.08994 * 109.62729 * 291.47991 * 20 11 10 35 35 H 1.09001 * 109.78867 * 170.99391 * 20 11 10 36 36 H 1.09005 * 109.49641 * 307.21479 * 21 8 7 37 37 H 1.09000 * 109.49689 * 67.29550 * 21 8 7 38 38 H 1.08006 * 119.94062 * 179.69990 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 0.4711 -1.1123 5 6 4.6486 0.4695 -1.1055 6 6 5.3393 0.0026 -0.0003 7 6 6.8463 0.0053 -0.0021 8 7 7.3376 -1.2692 -0.5429 9 6 6.9839 -2.3876 0.3414 10 6 7.3512 -3.7096 -0.3409 11 7 8.7664 -3.6536 -0.7370 12 6 9.6323 -4.6581 -0.3956 13 1 10.6871 -4.4500 -0.2926 14 6 9.1543 -5.9437 -0.1819 15 7 7.9607 -6.2833 -0.6204 16 14 10.2050 -7.1916 0.7280 17 1 9.9204 -7.1111 2.1833 18 1 9.8891 -8.5568 0.2366 19 1 11.6409 -6.8989 0.4874 20 6 9.2271 -2.4902 -1.5103 21 6 8.7860 -1.2162 -0.7820 22 6 4.6539 -0.4660 1.1049 23 6 3.2711 -0.4708 1.1134 24 9 2.6016 -0.9294 2.1935 25 1 2.7335 0.8355 -1.9760 26 1 5.1915 0.8335 -1.9652 27 1 7.2074 0.8262 -0.6216 28 1 7.2107 0.1319 1.0174 29 1 7.5326 -2.2974 1.2790 30 1 5.9130 -2.3674 0.5428 31 1 6.7289 -3.8509 -1.2245 32 1 7.1980 -4.5353 0.3542 33 1 7.6267 -7.1818 -0.4714 34 1 8.7851 -2.5143 -2.5063 35 1 10.3139 -2.5080 -1.5915 36 1 9.0219 -0.3465 -1.3953 37 1 9.3096 -1.1423 0.1712 38 1 5.1995 -0.8333 1.9617 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361861162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:40 Heat of formation + Delta-G solvation = 27.421842 kcal Electronic energy + Delta-G solvation = -22300.418418 eV Core-core repulsion = 18864.595482 eV Total energy + Delta-G solvation = -3435.822936 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.11039 -40.69767 -39.30477 -37.69984 -36.16799 -33.75066 -32.32645 -31.83083 -31.43380 -28.99677 -26.71752 -24.59398 -24.31269 -23.72765 -22.66603 -20.75928 -20.21490 -18.71052 -17.97468 -17.66232 -17.05361 -16.82413 -16.19799 -15.99498 -15.76121 -15.29869 -15.26134 -15.03770 -14.92756 -14.84149 -14.56892 -14.48833 -13.96921 -13.85393 -13.28907 -13.05073 -12.91271 -12.77145 -12.69871 -12.58516 -12.24526 -12.20164 -11.97730 -11.81017 -11.52634 -11.36364 -10.56390 -10.04091 -9.74951 -9.20292 -8.64071 -7.85232 -5.29314 -0.43997 0.17598 1.45289 1.47712 1.49048 1.57696 1.76658 2.52506 2.59728 2.69259 3.02057 3.22211 3.31084 3.64450 3.75001 3.78442 4.16771 4.22390 4.35806 4.42493 4.50020 4.56249 4.68376 4.71308 4.77035 4.88934 4.89298 4.97694 5.02341 5.11562 5.15412 5.27838 5.43876 5.50205 5.64291 5.73721 5.74291 6.21325 6.28794 6.30579 6.40468 7.16502 7.88637 8.41194 9.21074 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.021152 B = 0.003871 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.408359 B = 7230.875108 C = 7962.511001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.275 3.725 3 C -0.079 4.079 4 C -0.029 4.029 5 C -0.099 4.099 6 C -0.014 4.014 7 C 0.085 3.915 8 N -0.533 5.533 9 C 0.049 3.951 10 C 0.185 3.815 11 N -0.615 5.615 12 C -0.261 4.261 13 H 0.069 0.931 14 C -0.052 4.052 15 N -0.936 5.936 16 Si 0.965 3.035 17 H -0.287 1.287 18 H -0.297 1.297 19 H -0.267 1.267 20 C 0.141 3.859 21 C 0.056 3.944 22 C -0.152 4.152 23 C 0.131 3.869 24 F -0.143 7.143 25 H 0.171 0.829 26 H 0.171 0.829 27 H 0.120 0.880 28 H 0.051 0.949 29 H 0.021 0.979 30 H 0.078 0.922 31 H -0.004 1.004 32 H 0.051 0.949 33 H 0.249 0.751 34 H 0.017 0.983 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.026 0.974 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 18.347 0.299 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.039 4.039 3 C -0.084 4.084 4 C -0.049 4.049 5 C -0.117 4.117 6 C -0.015 4.015 7 C -0.042 4.042 8 N -0.258 5.258 9 C -0.080 4.080 10 C 0.059 3.941 11 N -0.340 5.340 12 C -0.391 4.391 13 H 0.086 0.914 14 C -0.247 4.247 15 N -0.582 5.582 16 Si 0.793 3.207 17 H -0.214 1.214 18 H -0.224 1.224 19 H -0.192 1.192 20 C 0.016 3.984 21 C -0.072 4.072 22 C -0.172 4.172 23 C 0.109 3.891 24 F -0.122 7.122 25 H 0.189 0.811 26 H 0.189 0.811 27 H 0.138 0.862 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.096 0.904 31 H 0.014 0.986 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.044 0.956 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.535 18.101 -0.103 18.928 hybrid contribution 0.813 -1.444 1.588 2.295 sum -4.722 16.656 1.485 17.376 Atomic orbital electron populations 1.81245 1.13047 1.10202 1.08451 1.25657 0.92645 0.92688 0.92932 1.16115 0.83877 1.10837 0.97522 1.21397 0.94320 0.93692 0.95480 1.21366 0.93034 0.98852 0.98492 1.20018 0.96198 0.92960 0.92336 1.21288 0.89554 0.92836 1.00472 1.61925 1.14558 1.02547 1.46783 1.22625 0.99793 0.92104 0.93506 1.20589 0.83805 0.93874 0.95804 1.44431 1.06594 1.21067 1.61877 1.19551 0.91315 0.88108 1.40152 0.91364 1.25754 0.98501 0.98588 1.01847 1.70190 1.20384 1.19012 1.48641 0.85301 0.78917 0.78110 0.78346 1.21359 1.22381 1.19204 1.21169 0.97441 0.86621 0.93173 1.22494 0.86533 0.98906 0.99296 1.21133 0.91054 1.03304 1.01676 1.17747 0.90353 0.97932 0.83054 1.91512 1.80863 1.86404 1.53408 0.81143 0.81143 0.86195 0.93112 0.96094 0.90352 0.98585 0.93110 0.94234 0.96468 0.92230 0.87546 0.95558 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.84 18.54 19.00 0.35 -12.49 16 2 C 0.28 6.55 14.98 88.33 1.32 7.87 16 3 C -0.08 -1.53 5.74 -21.29 -0.12 -1.65 16 4 C -0.03 -0.38 9.76 22.53 0.22 -0.16 16 5 C -0.10 -1.29 9.67 22.23 0.22 -1.07 16 6 C -0.01 -0.23 4.90 -19.82 -0.10 -0.33 16 7 C 0.09 1.52 5.11 85.56 0.44 1.96 16 8 N -0.53 -14.74 4.62 -899.82 -4.16 -18.90 16 9 C 0.05 1.71 5.33 86.38 0.46 2.17 16 10 C 0.19 8.80 5.42 86.35 0.47 9.27 16 11 N -0.62 -30.19 3.04 -698.13 -2.12 -32.31 16 12 C -0.26 -14.13 9.63 84.03 0.81 -13.32 16 13 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 14 C -0.05 -2.87 4.93 84.86 0.42 -2.45 16 15 N -0.94 -55.40 11.15 21.65 0.24 -55.16 16 16 Si 0.96 44.54 29.59 68.60 2.03 46.57 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 C 0.14 5.44 6.69 86.35 0.58 6.02 16 21 C 0.06 1.59 5.62 86.38 0.49 2.08 16 22 C -0.15 -2.99 7.82 22.28 0.17 -2.82 16 23 C 0.13 2.83 7.28 22.68 0.17 3.00 16 24 F -0.14 -3.65 16.81 44.97 0.76 -2.90 16 25 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 26 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 27 H 0.12 1.42 7.91 -2.39 -0.02 1.40 16 28 H 0.05 0.89 8.06 -2.39 -0.02 0.87 16 29 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.08 2.49 5.65 -2.39 -0.01 2.47 16 31 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.05 2.76 6.12 -2.38 -0.01 2.75 16 33 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 34 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 2.20 7.96 -2.39 -0.02 2.19 16 36 H 0.11 2.16 7.99 -2.38 -0.02 2.14 16 37 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.14 2.78 7.91 -2.91 -0.02 2.76 16 Total: -1.00 -68.66 324.42 3.71 -64.94 By element: Atomic # 1 Polarization: -1.39 SS G_CDS: 1.08 Total: -0.32 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 5.53 Total: 10.55 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -5.68 Total: -118.86 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.76 Total: -2.90 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -68.66 3.71 -64.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361861162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.366 kcal (2) G-P(sol) polarization free energy of solvation -68.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds