Wall clock time and date at job start Tue Mar 31 2020 06:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48503 * 109.47223 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47077 * 120.00554 * 3 2 1 6 6 H 1.48499 * 109.47454 * 240.00258 * 3 2 1 7 7 C 1.37883 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99727 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00119 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.93488 * 48.43906 * 9 7 2 11 11 C 1.53931 * 113.73585 * 276.73589 * 9 7 2 12 12 N 1.47964 * 86.18086 * 221.92069 * 11 9 7 13 13 C 1.46899 * 111.00340 * 137.58151 * 12 11 9 14 14 C 1.52999 * 109.46977 * 75.90901 * 13 12 11 15 15 H 1.09004 * 109.43570 * 303.54687 * 14 13 12 16 16 C 1.53066 * 109.43767 * 63.46625 * 14 13 12 17 17 C 1.53418 * 108.29230 * 168.25263 * 16 14 13 18 18 O 1.42827 * 108.37246 * 295.25438 * 17 16 14 19 19 C 1.35851 * 117.86141 * 49.14379 * 18 17 16 20 20 C 1.39148 * 118.49944 * 162.98059 * 19 18 17 21 21 C 1.37963 * 120.21524 * 179.82247 * 20 19 18 22 22 C 1.38287 * 119.96238 * 359.97438 * 21 20 19 23 23 C 1.38110 * 119.98023 * 0.08213 * 22 21 20 24 24 C 1.38369 * 121.80661 * 342.93104 * 19 18 17 25 25 C 1.47958 * 90.76192 * 24.68678 * 12 11 9 26 26 H 0.97000 * 119.99956 * 359.97438 * 1 2 3 27 27 H 0.96696 * 114.00214 * 309.66793 * 10 9 7 28 28 H 1.08998 * 113.75908 * 336.23658 * 11 9 7 29 29 H 1.08996 * 113.76454 * 107.60084 * 11 9 7 30 30 H 1.09000 * 109.47358 * 195.91073 * 13 12 11 31 31 H 1.09001 * 109.47029 * 315.91218 * 13 12 11 32 32 H 1.09001 * 109.69864 * 287.94858 * 16 14 13 33 33 H 1.08994 * 109.70074 * 48.55495 * 16 14 13 34 34 H 1.09004 * 109.68183 * 54.96943 * 17 16 14 35 35 H 1.09001 * 109.68528 * 175.53133 * 17 16 14 36 36 H 1.08000 * 119.88733 * 359.84390 * 20 19 18 37 37 H 1.08005 * 120.02160 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.01379 * 180.02562 * 22 21 20 39 39 H 1.07997 * 119.83790 * 179.97438 * 23 22 21 40 40 H 1.09001 * 113.75861 * 220.99627 * 25 12 11 41 41 H 1.09002 * 113.85976 * 89.64534 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1031 1.6963 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2162 -2.5447 -0.9849 11 6 0.7987 -2.9534 1.3989 12 7 1.2180 -4.3109 0.9854 13 6 1.9379 -4.9926 2.0694 14 6 0.9384 -5.4654 3.1269 15 1 0.3593 -4.6141 3.4849 16 6 -0.0056 -6.5000 2.5093 17 6 -0.7940 -7.1695 3.6423 18 8 0.1240 -7.8935 4.4628 19 6 1.2436 -7.2494 4.8838 20 6 1.9575 -7.7871 5.9502 21 6 3.1017 -7.1641 6.4043 22 6 3.5420 -6.0017 5.7983 23 6 2.8352 -5.4645 4.7403 24 6 1.6847 -6.0844 4.2814 25 6 2.1617 -3.7403 -0.0011 26 1 -0.4850 0.8400 0.0004 27 1 -0.3758 -1.7803 -0.9688 28 1 1.3961 -2.5374 2.2101 29 1 -0.2740 -2.8571 1.5665 30 1 2.4734 -5.8519 1.6657 31 1 2.6485 -4.3024 2.5239 32 1 -0.6947 -6.0059 1.8243 33 1 0.5733 -7.2505 1.9712 34 1 -1.2978 -6.4086 4.2385 35 1 -1.5303 -7.8547 3.2223 36 1 1.6150 -8.6953 6.4238 37 1 3.6532 -7.5840 7.2325 38 1 4.4378 -5.5135 6.1528 39 1 3.1809 -4.5564 4.2690 40 1 2.1779 -4.2727 -0.9521 41 1 3.1584 -3.5539 0.3989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364473063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:57 Heat of formation + Delta-G solvation = -30.835995 kcal Electronic energy + Delta-G solvation = -23246.976158 eV Core-core repulsion = 19899.794527 eV Total energy + Delta-G solvation = -3347.181631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76988 -38.97414 -37.45167 -35.39531 -33.63729 -32.07531 -30.63025 -30.21603 -28.85454 -26.32277 -25.15130 -24.28360 -23.67044 -22.54021 -20.95511 -19.64031 -18.62288 -17.76622 -17.26888 -16.60328 -16.03907 -15.20140 -14.98476 -14.94281 -14.65838 -14.19522 -14.02192 -13.67956 -13.63987 -13.19388 -13.12762 -12.74338 -12.14960 -12.05923 -11.98132 -11.59794 -11.45854 -11.30378 -11.13386 -10.84715 -10.80945 -10.64744 -10.59827 -10.34623 -10.10110 -9.95849 -9.31607 -8.78192 -8.65587 -8.23151 -8.12627 -7.82071 -6.28411 -4.38301 1.32500 1.43888 3.18981 3.24703 3.27078 3.32158 3.76864 4.23212 4.52158 4.75539 4.82109 4.89084 4.93258 5.01375 5.10947 5.24795 5.32193 5.36760 5.47763 5.55380 5.56372 5.82235 5.90860 5.93575 5.97269 6.04738 6.14831 6.21003 6.28737 6.34101 6.34934 6.45026 6.52255 6.58880 6.67621 6.80361 6.99923 7.16138 7.33728 7.47270 7.74052 7.95107 7.99037 8.63112 9.31870 9.63416 10.77313 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.004074 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.165987 B = 6871.141500 C = 7584.584814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.245 3.755 10 O -0.572 6.572 11 C -0.014 4.014 12 N -0.477 5.477 13 C 0.031 3.969 14 C -0.039 4.039 15 H 0.083 0.917 16 C -0.141 4.141 17 C 0.059 3.941 18 O -0.321 6.321 19 C 0.133 3.867 20 C -0.155 4.155 21 C -0.093 4.093 22 C -0.155 4.155 23 C -0.083 4.083 24 C -0.146 4.146 25 C 0.009 3.991 26 H 0.271 0.729 27 H 0.389 0.611 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.074 0.926 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.115 -11.620 10.347 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.204 3.796 10 O -0.384 6.384 11 C -0.143 4.143 12 N -0.200 5.200 13 C -0.098 4.098 14 C -0.058 4.058 15 H 0.102 0.898 16 C -0.179 4.179 17 C -0.016 4.016 18 O -0.235 6.235 19 C 0.088 3.912 20 C -0.173 4.173 21 C -0.112 4.112 22 C -0.173 4.173 23 C -0.101 4.101 24 C -0.148 4.148 25 C -0.120 4.120 26 H 0.082 0.918 27 H 0.244 0.756 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.093 0.907 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.676 -12.738 10.024 16.296 hybrid contribution 0.877 2.176 0.534 2.406 sum 2.553 -10.562 10.558 15.150 Atomic orbital electron populations 1.69335 1.06098 1.27900 1.50542 1.25041 0.94963 0.99590 0.93387 0.86486 0.79587 0.82129 0.78838 1.20990 1.20094 1.19936 1.21630 0.93638 0.90816 1.51623 0.91783 1.19721 0.85137 0.90707 0.84044 1.86037 1.45197 1.50184 1.56972 1.24705 1.00492 0.87555 1.01543 1.68504 1.26411 1.16250 1.08788 1.22660 0.94982 0.99072 0.93044 1.19956 0.95997 0.97685 0.92123 0.89847 1.22143 0.99439 0.98614 0.97675 1.23075 0.90518 0.96492 0.91522 1.85946 1.30426 1.40835 1.66269 1.18712 0.87528 0.91774 0.93221 1.20547 0.97429 1.02393 0.96947 1.20872 0.95504 0.95410 0.99367 1.21019 1.01013 0.97335 0.97932 1.21062 0.93792 0.99429 0.95836 1.19942 0.98448 0.96851 0.99523 1.24113 0.95060 0.96602 0.96206 0.91834 0.75648 0.92397 0.91114 0.91577 0.94177 0.88535 0.90765 0.91965 0.87623 0.85581 0.85756 0.86060 0.85558 0.90729 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.77 11.09 55.43 0.61 -23.15 16 2 C 0.07 1.88 5.40 -17.82 -0.10 1.78 16 3 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.19 8.62 -34.44 -0.30 -14.49 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.25 6.09 1.44 -90.84 -0.13 5.96 16 10 O -0.57 -15.25 13.48 -35.23 -0.47 -15.73 16 11 C -0.01 -0.31 6.71 -2.77 -0.02 -0.33 16 12 N -0.48 -9.51 5.85 -238.25 -1.39 -10.91 16 13 C 0.03 0.52 3.77 -3.82 -0.01 0.51 16 14 C -0.04 -0.59 2.43 -91.70 -0.22 -0.81 16 15 H 0.08 1.35 7.65 -51.93 -0.40 0.95 16 16 C -0.14 -1.96 5.23 -26.48 -0.14 -2.10 16 17 C 0.06 0.71 7.03 37.37 0.26 0.97 16 18 O -0.32 -4.45 10.27 -19.27 -0.20 -4.65 16 19 C 0.13 1.87 6.47 -39.20 -0.25 1.62 16 20 C -0.15 -1.90 9.94 -39.34 -0.39 -2.29 16 21 C -0.09 -1.03 10.04 -39.66 -0.40 -1.42 16 22 C -0.15 -1.81 10.04 -39.61 -0.40 -2.20 16 23 C -0.08 -1.12 9.09 -39.53 -0.36 -1.48 16 24 C -0.15 -2.11 5.43 -104.44 -0.57 -2.68 16 25 C 0.01 0.19 7.37 -2.77 -0.02 0.17 16 26 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.39 10.53 6.46 45.56 0.29 10.83 16 28 H 0.06 1.29 7.64 -51.93 -0.40 0.89 16 29 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 31 H 0.04 0.67 5.89 -51.93 -0.31 0.37 16 32 H 0.10 1.42 8.06 -51.93 -0.42 1.00 16 33 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.13 1.66 6.41 -52.49 -0.34 1.33 16 40 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.06 1.28 7.83 -51.93 -0.41 0.88 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -27.76 329.58 -9.86 -37.63 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -5.31 Total: 13.47 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -3.04 Total: -16.79 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: -0.78 Total: -34.06 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.67 Total: -20.38 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.76 -9.86 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364473063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.791 kcal (2) G-P(sol) polarization free energy of solvation -27.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds