Wall clock time and date at job start Tue Mar 31 2020 06:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48503 * 109.47223 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47077 * 120.00554 * 3 2 1 6 6 H 1.48499 * 109.47454 * 240.00258 * 3 2 1 7 7 C 1.37883 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99727 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00119 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.93488 * 48.43906 * 9 7 2 11 11 C 1.53931 * 113.73585 * 276.73589 * 9 7 2 12 12 N 1.47964 * 86.18086 * 221.92069 * 11 9 7 13 13 C 1.46899 * 111.00340 * 137.58151 * 12 11 9 14 14 C 1.52999 * 109.46977 * 75.90901 * 13 12 11 15 15 H 1.09004 * 109.43570 * 303.54687 * 14 13 12 16 16 C 1.53066 * 109.43767 * 63.46625 * 14 13 12 17 17 C 1.53418 * 108.29230 * 168.25263 * 16 14 13 18 18 O 1.42827 * 108.37246 * 295.25438 * 17 16 14 19 19 C 1.35851 * 117.86141 * 49.14379 * 18 17 16 20 20 C 1.39148 * 118.49944 * 162.98059 * 19 18 17 21 21 C 1.37963 * 120.21524 * 179.82247 * 20 19 18 22 22 C 1.38287 * 119.96238 * 359.97438 * 21 20 19 23 23 C 1.38110 * 119.98023 * 0.08213 * 22 21 20 24 24 C 1.38369 * 121.80661 * 342.93104 * 19 18 17 25 25 C 1.47958 * 90.76192 * 24.68678 * 12 11 9 26 26 H 0.97000 * 119.99956 * 359.97438 * 1 2 3 27 27 H 0.96696 * 114.00214 * 309.66793 * 10 9 7 28 28 H 1.08998 * 113.75908 * 336.23658 * 11 9 7 29 29 H 1.08996 * 113.76454 * 107.60084 * 11 9 7 30 30 H 1.09000 * 109.47358 * 195.91073 * 13 12 11 31 31 H 1.09001 * 109.47029 * 315.91218 * 13 12 11 32 32 H 1.09001 * 109.69864 * 287.94858 * 16 14 13 33 33 H 1.08994 * 109.70074 * 48.55495 * 16 14 13 34 34 H 1.09004 * 109.68183 * 54.96943 * 17 16 14 35 35 H 1.09001 * 109.68528 * 175.53133 * 17 16 14 36 36 H 1.08000 * 119.88733 * 359.84390 * 20 19 18 37 37 H 1.08005 * 120.02160 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.01379 * 180.02562 * 22 21 20 39 39 H 1.07997 * 119.83790 * 179.97438 * 23 22 21 40 40 H 1.09001 * 113.75861 * 220.99627 * 25 12 11 41 41 H 1.09002 * 113.85976 * 89.64534 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1031 1.6963 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2162 -2.5447 -0.9849 11 6 0.7987 -2.9534 1.3989 12 7 1.2180 -4.3109 0.9854 13 6 1.9379 -4.9926 2.0694 14 6 0.9384 -5.4654 3.1269 15 1 0.3593 -4.6141 3.4849 16 6 -0.0056 -6.5000 2.5093 17 6 -0.7940 -7.1695 3.6423 18 8 0.1240 -7.8935 4.4628 19 6 1.2436 -7.2494 4.8838 20 6 1.9575 -7.7871 5.9502 21 6 3.1017 -7.1641 6.4043 22 6 3.5420 -6.0017 5.7983 23 6 2.8352 -5.4645 4.7403 24 6 1.6847 -6.0844 4.2814 25 6 2.1617 -3.7403 -0.0011 26 1 -0.4850 0.8400 0.0004 27 1 -0.3758 -1.7803 -0.9688 28 1 1.3961 -2.5374 2.2101 29 1 -0.2740 -2.8571 1.5665 30 1 2.4734 -5.8519 1.6657 31 1 2.6485 -4.3024 2.5239 32 1 -0.6947 -6.0059 1.8243 33 1 0.5733 -7.2505 1.9712 34 1 -1.2978 -6.4086 4.2385 35 1 -1.5303 -7.8547 3.2223 36 1 1.6150 -8.6953 6.4238 37 1 3.6532 -7.5840 7.2325 38 1 4.4378 -5.5135 6.1528 39 1 3.1809 -4.5564 4.2690 40 1 2.1779 -4.2727 -0.9521 41 1 3.1584 -3.5539 0.3989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364473063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:56 Heat of formation + Delta-G solvation = -49.410493 kcal Electronic energy + Delta-G solvation = -23247.781609 eV Core-core repulsion = 19899.794527 eV Total energy + Delta-G solvation = -3347.987082 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84883 -40.64659 -38.41072 -36.89794 -35.26201 -34.10136 -31.62032 -31.20769 -30.34936 -28.02268 -26.92540 -25.66225 -24.77872 -23.70206 -22.27400 -20.78742 -20.42697 -19.21421 -18.77225 -17.65005 -17.18743 -17.10619 -16.52274 -16.30819 -15.87720 -15.68569 -15.35336 -15.07404 -14.81404 -14.53853 -14.24396 -13.97946 -13.84644 -13.55869 -13.39074 -13.21657 -12.86828 -12.76566 -12.53282 -12.45110 -12.29624 -12.15112 -11.93365 -11.81454 -11.65384 -11.21063 -11.13254 -10.63096 -10.13549 -9.75328 -9.56816 -9.11313 -8.25258 -6.43123 0.35939 0.47218 1.41859 1.43381 1.51287 2.36002 2.36674 2.80075 2.95309 3.08015 3.65375 3.67965 3.69924 3.87217 4.07218 4.17613 4.19076 4.23901 4.28288 4.34722 4.41989 4.50321 4.53105 4.57057 4.62152 4.70295 4.82465 4.85255 4.89371 5.06787 5.11777 5.12939 5.19605 5.36131 5.41287 5.46295 5.56870 5.61994 5.74392 5.88083 5.98555 6.29677 6.47441 6.61578 7.29931 7.53885 8.79200 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.004074 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.165987 B = 6871.141500 C = 7584.584814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.030 3.970 3 Si 0.965 3.035 4 H -0.280 1.280 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.563 4.563 8 H 0.063 0.937 9 C 0.218 3.782 10 O -0.584 6.584 11 C 0.002 3.998 12 N -0.473 5.473 13 C 0.037 3.963 14 C -0.034 4.034 15 H 0.067 0.933 16 C -0.137 4.137 17 C 0.061 3.939 18 O -0.328 6.328 19 C 0.114 3.886 20 C -0.160 4.160 21 C -0.086 4.086 22 C -0.155 4.155 23 C -0.099 4.099 24 C -0.164 4.164 25 C 0.016 3.984 26 H 0.274 0.726 27 H 0.382 0.618 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.159 0.841 38 H 0.145 0.855 39 H 0.122 0.878 40 H 0.075 0.925 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.321 -12.352 11.898 17.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.170 4.170 3 Si 0.790 3.210 4 H -0.205 1.205 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.601 4.601 8 H 0.081 0.919 9 C 0.177 3.823 10 O -0.396 6.396 11 C -0.128 4.128 12 N -0.196 5.196 13 C -0.092 4.092 14 C -0.052 4.052 15 H 0.085 0.915 16 C -0.175 4.175 17 C -0.013 4.013 18 O -0.243 6.243 19 C 0.069 3.931 20 C -0.178 4.178 21 C -0.103 4.103 22 C -0.173 4.173 23 C -0.117 4.117 24 C -0.165 4.165 25 C -0.113 4.113 26 H 0.084 0.916 27 H 0.236 0.764 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.177 0.823 38 H 0.163 0.837 39 H 0.140 0.860 40 H 0.093 0.907 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.888 -13.487 11.578 18.008 hybrid contribution 0.529 2.360 0.084 2.420 sum 3.417 -11.127 11.663 16.477 Atomic orbital electron populations 1.69415 1.07158 1.28687 1.50635 1.25774 0.95767 1.02601 0.92905 0.85509 0.78393 0.78275 0.78860 1.20529 1.19478 1.19763 1.21904 0.93819 0.91979 1.52374 0.91877 1.20106 0.85522 0.91764 0.84859 1.86020 1.45636 1.49896 1.57999 1.24406 0.99393 0.88855 1.00143 1.68430 1.26645 1.14927 1.09558 1.22655 0.95251 0.98820 0.92474 1.19831 0.95715 0.97548 0.92149 0.91493 1.22067 0.99126 0.98148 0.98113 1.23171 0.90360 0.97104 0.90704 1.85935 1.30634 1.41196 1.66500 1.18988 0.88044 0.91981 0.94133 1.20888 0.97585 1.02979 0.96353 1.21287 0.94846 0.94636 0.99560 1.21342 1.01396 0.97511 0.97007 1.21170 0.94043 0.99601 0.96853 1.19883 0.99186 0.97639 0.99798 1.24054 0.95289 0.95112 0.96814 0.91635 0.76363 0.92632 0.92645 0.90886 0.94072 0.89702 0.91205 0.91717 0.85061 0.83861 0.82341 0.83723 0.86004 0.90702 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.12 11.09 21.45 0.24 -48.88 16 2 C 0.03 1.54 5.40 84.66 0.46 1.99 16 3 Si 0.96 41.22 29.54 68.60 2.03 43.24 16 4 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.56 -29.87 8.62 25.60 0.22 -29.65 16 8 H 0.06 3.27 7.81 -2.91 -0.02 3.24 16 9 C 0.22 11.02 1.44 -10.90 -0.02 11.00 16 10 O -0.58 -31.89 13.48 -148.98 -2.01 -33.90 16 11 C 0.00 0.07 6.71 86.40 0.58 0.65 16 12 N -0.47 -19.02 5.85 -910.91 -5.33 -24.34 16 13 C 0.04 1.22 3.77 86.30 0.33 1.54 16 14 C -0.03 -1.03 2.43 -11.49 -0.03 -1.06 16 15 H 0.07 2.22 7.65 -2.38 -0.02 2.20 16 16 C -0.14 -3.79 5.23 30.76 0.16 -3.63 16 17 C 0.06 1.42 7.03 72.12 0.51 1.93 16 18 O -0.33 -8.71 10.27 -91.87 -0.94 -9.65 16 19 C 0.11 3.06 6.47 22.52 0.15 3.21 16 20 C -0.16 -3.53 9.94 22.42 0.22 -3.31 16 21 C -0.09 -1.60 10.04 22.22 0.22 -1.38 16 22 C -0.15 -3.22 10.04 22.25 0.22 -2.99 16 23 C -0.10 -2.55 9.09 22.30 0.20 -2.35 16 24 C -0.16 -4.62 5.43 -19.75 -0.11 -4.73 16 25 C 0.02 0.69 7.37 86.41 0.64 1.32 16 26 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 27 H 0.38 21.37 6.46 -74.06 -0.48 20.89 16 28 H 0.06 2.52 7.64 -2.39 -0.02 2.50 16 29 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.07 2.34 8.13 -2.39 -0.02 2.33 16 31 H 0.04 1.37 5.89 -2.39 -0.01 1.36 16 32 H 0.08 2.52 8.06 -2.39 -0.02 2.50 16 33 H 0.07 1.98 8.09 -2.39 -0.02 1.96 16 34 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 39 H 0.12 3.16 6.41 -2.91 -0.02 3.14 16 40 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.08 3.03 7.83 -2.39 -0.02 3.01 16 Total: -1.00 -59.06 329.58 -1.70 -60.76 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: 0.56 Total: 40.22 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: 3.75 Total: -27.45 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: -5.09 Total: -73.23 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -2.95 Total: -43.55 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -59.06 -1.70 -60.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364473063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.353 kcal (2) G-P(sol) polarization free energy of solvation -59.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds